Download MendeleyNF-kapppaB p52:RelB heterodimer uses different binding modes to recognize different kappaB DNA
Fusco, A., Huang, D.B., Miller, D., Vu, D., Ghosh, G.To be published.
3DO7
X-ray structure of a NF-kB p52/RelB/DNA complex
- PDB DOI: https://doi.org/10.2210/pdb3DO7/pdb
- NAKB: 3DO7
- Classification: TRANSCRIPTION/DNA
- Organism(s): Mus musculus, Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2008-07-03 Released: 2009-07-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.05 Å
- R-Value Free: 0.273
- R-Value Work: 0.230
- R-Value Observed: 0.230
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Avian reticuloendotheliosis viral (V-rel) oncogene related B | D [auth A] | 296 | Mus musculus | Mutation(s): 0 Gene Names: Relb |  |
UniProt | |||||
Find proteins for Q04863 (Mus musculus) Explore Q04863 Go to UniProtKB: Q04863 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q04863 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nuclear factor NF-kappa-B p100 subunit | E [auth B] | 293 | Homo sapiens | Mutation(s): 0 Gene Names: NFKB2, LYT10 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q00653 (Homo sapiens) Explore Q00653 Go to UniProtKB: Q00653 | |||||
PHAROS: Q00653 GTEx: ENSG00000077150 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q00653 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| 5'-D(*DCP*DGP*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DCP*DC)-3' | A [auth C], B [auth D], C [auth E] | 11 | N/A |  | |
Sequence AnnotationsExpand | |||||
| |||||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.05 Å
- R-Value Free: 0.273
- R-Value Work: 0.230
- R-Value Observed: 0.230
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 77.64 | α = 90 |
| b = 124.13 | β = 90 |
| c = 189.59 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2009-07-21 Deposition Author(s): Fusco, A., Huang, D.B., Miller, D., Vu, D., Ghosh, G.
Revision History (Full details and data files)
- Version 1.0: 2009-07-21
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2024-10-30
Changes: Data collection, Database references, Structure summary
