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Link to original content: https://www.biostars.org/tag/oma/
Biostar Oma
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Showing top results for tag: oma • reset
1
vote
2
replies
317
views
Converting OMA IDs to Ensembl gene names
orthologs OMA ensembl
updated 3 months ago by 44k • written 3 months ago by • 0
0
votes
1
reply
256
views
Obtaining OMA and HOG IDs
OMA browser
updated 4 months ago by ★ 1.1k • written 4 months ago by • 0
2
votes
1
reply
371
views
Finding orthologs between genome error
OMA OMAbrowser
updated 6 months ago by ★ 1.1k • written 6 months ago by • 0
0
votes
2
replies
338
views
Mapping of OMA IDs to UniProtKB AC
OMA orthologs
updated 7 months ago by 146k • written 7 months ago by • 0
2
votes
2
replies
404
views
Errors from REST and Browser for specific HOGS?
OMA
9 months ago by Andrew ▴ 20
4
votes
6
replies
1.3k
views
OMA in AWS cloud
OMA AWS
updated 12 months ago by ★ 1.1k • written 13 months ago by ▴ 10
2
votes
2
replies
821
views
Retrieving Chromosome Accession for Specific Gene Using Ensembl REST API
OMA Ensembl Rest
updated 15 months ago by 44k • written 15 months ago by • 0
2
votes
3
replies
624
views
Downloading Microsyntenic Fasta Sequences with Varying Chromosome Formats
microsyntenic-region fasta oma chromosomes
15 months ago by Nicolas • 0
0
votes
11
replies
1.5k
views
search for intron conservancy across species
intron oma intronDB splicing
15 months ago by Buffo ★ 2.4k
0
votes
5
replies
941
views
oma orthology part 2 script
oma orthologous-groups orthology
updated 16 months ago by ▴ 30 • written 16 months ago by • 0
1
vote
0
replies
1.1k
views
Job: Postdoctoral position in Evolutionary Structural Bioinformatics
urmetazoan OMA phylogenetics common-ancestor
updated 16 months ago by 44k • written 16 months ago by ▴ 20
1
vote
0
replies
1.1k
views
Job: Postdoctoral Research position in Bioinformatics and Comparative Genomics
Genomics OMA synteny ancestral
updated 16 months ago by 44k • written 16 months ago by ▴ 20
3
votes
8
replies
1.4k
views
syntax errors when running part3 all-against-all
oma
19 months ago by Sofia ▴ 10
4
votes
2
replies
890
views
Obtaining every"Protein ID" from a genome in OMA
OMA orthologs
updated 21 months ago by ★ 1.1k • written 21 months ago by ▴ 10
2
votes
1
reply
542
views
Error, (in LoadSpliceMap) string to parse is too long
oma LoadSpliceMap omastandalone orthology
updated 21 months ago by ★ 1.1k • written 21 months ago by ▴ 10
4
votes
2
replies
841
views
OMA standalone error during database conversion step: Matches between X/X have been computed for different versions of X.
omastandalone oma orthology
updated 23 months ago by ★ 1.1k • written 23 months ago by ▴ 30
0
votes
1
reply
577
views
To generate genome-wise orthologs including paralogs from OMA
orthologs homology annotation whole OMA paralogs genome
updated 23 months ago by ★ 1.1k • written 2.1 years ago by ▴ 40
0
votes
0
replies
366
views
Inferring ancestral relationship between genes with OMA or Ensembl
homology Compara OMA Ensembl biomart
2.4 years ago by asente ▴ 30
1
vote
2
replies
764
views
Orthologs distances in OMA
OMA orthologs
updated 2.5 years ago by ★ 1.1k • written 2.5 years ago by • 0
3
votes
1
reply
590
views
Multiple OMA groups per uniprotID in OMAdb
OMA orthologs
updated 2.5 years ago by ★ 1.1k • written 2.5 years ago by ▴ 10
0
votes
2
replies
677
views
Error while running All-against-All alignments in OMA
OMA parallelization standalone qsub
updated 2.7 years ago by ★ 1.1k • written 2.7 years ago by • 0
1
vote
2
replies
973
views
Evolutionary dynamics with OMAmer HOGs (orthoXML file?)
orthologs OMAmer HOGs oma pyHAM
2.8 years ago by biomonte ▴ 220
1
vote
2
replies
1.5k
views
OMA standalone:"Error, (in ReadFastaWithNames) length(seqs) = length(refs), assertion failed"
oma
updated 2.8 years ago by • 0 • written 6.1 years ago by • 0
8
votes
14
replies
3.1k
views
Making python script for downloading genomes for OMA Analysis
orthology python OMA
updated 2.9 years ago by ▴ 240 • written 2.9 years ago by ▴ 140
0
votes
1
reply
799
views
OMA speed
orthology OMA
updated 2.9 years ago by ★ 1.1k • written 3.2 years ago by • 0
0
votes
1
reply
774
views
OMA standalone "FileStat" error
oma
updated 2.9 years ago by ★ 1.1k • written 3.4 years ago by • 0
2
votes
6
replies
1.5k
views
HOG without numbering in the genome of the ancestor reconstructed using the pyHAM
HOG OMA ancestor pyHAM genome
updated 2.7 years ago by ▴ 10 • written 3.2 years ago by ▴ 20
0
votes
1
reply
966
views
OMA output document error
OMA
updated 17 months ago by 44k • written 3.6 years ago by • 0
1
vote
2
replies
947
views
OMA Internet connection error - SLURM
OMA orthologs
updated 2.9 years ago by ★ 1.1k • written 2.9 years ago by • 0
1
vote
1
reply
800
views
oma-cleanup cannot be executed
OMA
updated 3.6 years ago by ★ 1.1k • written 3.7 years ago by • 0
4
votes
4
replies
1.2k
views
OMA standalone, parallelization
oma parallelization sge qsub
updated 3.7 years ago by ★ 1.1k • written 3.7 years ago by ▴ 40
2
votes
1
reply
802
views
Is OMA suitable for prediction of GO function in metagenomic datasets?
OMA GO_Label
updated 3.7 years ago by ▴ 60 • written 3.9 years ago by ▴ 10
2
votes
4
replies
1.4k
views
OMA-standalone and sequence gaps
oma oma-standalone genome
3.8 years ago by emmzarrr • 0
2
votes
2
replies
1.2k
views
OMA Standalone 2.4.2: cannot write to .oma directory
OMA orthologs EasyBuild
3.8 years ago by ed.eyles ▴ 10
5
votes
8
replies
1.2k
views
Downloading all-against-all precomputed for any number of species returns 504 Gateway Time-out
oma error
3.9 years ago by m3hdad ▴ 10
12
votes
11
replies
1.8k
views
Error running OMA standalone at HOG computation step
OMA HOG error orthologs
updated 3.9 years ago by ★ 1.1k • written 3.9 years ago by ▴ 20
4
votes
9
replies
1.4k
views
Predicting Gene Ontology function in OMA for large datasets
oma omabrowser gene_onthology
updated 4.0 years ago by ★ 1.1k • written 4.0 years ago by ▴ 10
1
vote
1
reply
1.0k
views
Problem running OMA standalone
OMA standalone omabrowser
4.1 years ago by olbei.marton • 0
6
votes
13
replies
3.1k
views
grid engine problem with OMA
oma grid engine cluster
updated 4.1 years ago by 20 • written 7.0 years ago by ▴ 30
4
votes
2
replies
941
views
OMA standalone estimating memory use for bacterial genomes
oma orthologs
updated 4.1 years ago by ★ 1.1k • written 4.1 years ago by ▴ 40
3
votes
1
reply
812
views
OMA error: Gene ontology, darwin
Oma
4.2 years ago by di • 0
0
votes
1
reply
1.1k
views
Alignment scores thresholds with DNA
OMA
updated 4.2 years ago by ★ 1.1k • written 4.2 years ago by • 0
0
votes
2
replies
1.1k
views
oma -c error report
oma
updated 4.3 years ago by 12k • written 4.3 years ago by • 0
0
votes
1
reply
884
views
oma -c killed
oma
updated 4.3 years ago by 44k • written 4.3 years ago by • 0
0
votes
1
reply
989
views
can standalone OMA be used on protein fasta (not genome)
OMA orthologs
updated 4.4 years ago by ★ 1.1k • written 4.4 years ago by ▴ 70
0
votes
1
reply
974
views
Clusters proteins at each taxonomic rank - OMA
OMA clustering
updated 4.5 years ago by ★ 1.1k • written 4.5 years ago by • 0
1
vote
1
reply
853
views
Error, 'sequence 1 is too long' OMA Standalone
oma
updated 4.5 years ago by ★ 1.1k • written 4.5 years ago by • 0
1
vote
4
replies
2.2k
views
OMA not finding numpy; pip and wget failing
oma slurm numpy pip wget
4.8 years ago by feander • 0
6
votes
2
replies
1.0k
views
Cannonical human sequence missing in OMA database?
software error OMA R oma
updated 4.9 years ago by ▴ 740 • written 4.9 years ago by ▴ 30
0
votes
3
replies
1.8k
views
start OMA run - file.log
omabrowser OMA
updated 5.1 years ago by 20 • written 6.6 years ago by ▴ 20
50 results • Page 1 of 1
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Answer: nf-core/rnaseq, problem with ensembl reference by Kai • 0
Hello, This was something that I came across fairly recently. It's somewhat misleading, as it does appear to be an issue with the transcr…
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> The second states that the inflated FDRs reported in the first paper is an artifact of incorrect data generation and that the Wilcoxon te…
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spatial_information (SeuratObject::FOV) is a rather complicated object which contains many other objects (like SeuratObject::Centroids and …
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Smell like an indentation issue for sure. Try to simplify your script as much as possible (echo something as output, remove your inputs). …
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I was wondering if snakemake has a specific interpretation of `"""`, on top of python usual interpretation, which is making multiple lines …
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