Cloning, gene structure and genomic localization of an orphan transporter from mouse kidney with six alternatively-spliced isoforms
- PMID: 9932288
Cloning, gene structure and genomic localization of an orphan transporter from mouse kidney with six alternatively-spliced isoforms
Abstract
Two genes were identified and characterized that express cDNAs related to previously identified neurotransmitter and/or osmolyte transporters, but which are expressed specifically in the kidney. RNA transcribed from one of these two genes (XT2) was found to undergo an extensive degree of alternative splicing to generate six distinct isoforms. The intron-exon structure of the XT2 gene and the sites of alternative splicing were identified. Expression of the second gene (XT3) was found to be conserved in human kidney, and partial sequence was obtained from a human cDNA library. The expressions of both XT2 and XT3 RNAs were determined in mouse and human tissues, respectively, and the locations of the two genes within the mouse genome were identified. Screening experiments to identify the substrate(s) of these proteins failed to identify specific uptake with any of the tested compounds; however, immunofluorescent microscopy demonstrated that epitope-tagged variants of the protein products of the XT2 and XT3 cDNAs were present on the plasma membrane of transfected cells.
Similar articles
-
Molecular cloning, functional characterization and genomic organization of four alternatively spliced isoforms of the human organic cation transporter 1 (hOCT1/SLC22A1).Ann Hum Genet. 1999 Nov;63(Pt 6):473-82. doi: 10.1017/S0003480099007770. Ann Hum Genet. 1999. PMID: 11388889
-
Genomic organization and tissue-specific expression of splice variants of mouse organic anion transporting polypeptide 2.Biochem Biophys Res Commun. 2001 Feb 23;281(2):431-9. doi: 10.1006/bbrc.2001.4387. Biochem Biophys Res Commun. 2001. PMID: 11181066
-
Mutually exclusive and cassette exons underlie alternatively spliced isoforms of the Na/Ca exchanger.J Biol Chem. 1994 Feb 18;269(7):5145-9. J Biol Chem. 1994. PMID: 8106495
-
Luminal kidney and intestine SLC6 amino acid transporters of B0AT-cluster and their tissue distribution in Mus musculus.Am J Physiol Renal Physiol. 2006 Feb;290(2):F376-83. doi: 10.1152/ajprenal.00286.2005. Epub 2005 Sep 20. Am J Physiol Renal Physiol. 2006. PMID: 16174864
-
The human Nramp2 gene: characterization of the gene structure, alternative splicing, promoter region and polymorphisms.Blood Cells Mol Dis. 1998 Jun;24(2):199-215. doi: 10.1006/bcmd.1998.0186. Blood Cells Mol Dis. 1998. PMID: 9642100
Cited by
-
Slc6a20a Heterozygous and Homozygous Mutant Mice Display Differential Behavioral and Transcriptomic Changes.Front Mol Neurosci. 2022 Mar 7;15:857820. doi: 10.3389/fnmol.2022.857820. eCollection 2022. Front Mol Neurosci. 2022. PMID: 35321029 Free PMC article.
-
SLC6A20 transporter: a novel regulator of brain glycine homeostasis and NMDAR function.EMBO Mol Med. 2021 Feb 5;13(2):e12632. doi: 10.15252/emmm.202012632. Epub 2021 Jan 11. EMBO Mol Med. 2021. PMID: 33428810 Free PMC article.
-
A non-helical region in transmembrane helix 6 of hydrophobic amino acid transporter MhsT mediates substrate recognition.EMBO J. 2021 Jan 4;40(1):e105164. doi: 10.15252/embj.2020105164. Epub 2020 Nov 6. EMBO J. 2021. PMID: 33155685 Free PMC article.
-
The solute carrier 6 family of transporters.Br J Pharmacol. 2012 Sep;167(2):256-78. doi: 10.1111/j.1476-5381.2012.01975.x. Br J Pharmacol. 2012. PMID: 22519513 Free PMC article. Review.
-
Chromatin and epigenetic regulation of the telomerase reverse transcriptase gene.Protein Cell. 2010 Jan;1(1):22-32. doi: 10.1007/s13238-010-0014-1. Epub 2010 Feb 7. Protein Cell. 2010. PMID: 21203995 Free PMC article. Review.
Publication types
MeSH terms
Substances
LinkOut - more resources
Other Literature Sources
Molecular Biology Databases