iBet uBet web content aggregator. Adding the entire web to your favor.
iBet uBet web content aggregator. Adding the entire web to your favor.



Link to original content: https://pubmed.ncbi.nlm.nih.gov/32236092
Getting clear about the F-word in genomics - PubMed Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2020 Apr 1;16(4):e1008702.
doi: 10.1371/journal.pgen.1008702. eCollection 2020 Apr.

Getting clear about the F-word in genomics

Affiliations

Getting clear about the F-word in genomics

Stefan Linquist et al. PLoS Genet. .
No abstract available

PubMed Disclaimer

Conflict of interest statement

The authors have declared that no competing interests exist.

Figures

Fig 1
Fig 1. A simple case of Constructive Neutral Evolution.
As Lambowitz and colleagues have shown [18], some strains of Neurospora crassa sport, in their mitochondrial rRNA genes, a group I intron which, because of its structure, is able to carry out a necessary interaction (self-splicing) without assistance of any protein. But in other strains, an unrelated protein fortuitously binds to and stabilizes the intron RNA. Destabilizing mutations in the RNA’s structure that would render it incapable of self-splicing without the bound protein are permitted ("pre-suppressed"). Such mutations are occasionally fixed by drift, and when more than one such mutation is possible, it is rare to reverse them all. Dependence on an assisting protein, initially a "pre-suppressor" of such mutations, is effectively locked-in.

Similar articles

  • Comparative genomics and the study of evolution by natural selection.
    Ellegren H. Ellegren H. Mol Ecol. 2008 Nov;17(21):4586-96. doi: 10.1111/j.1365-294X.2008.03954.x. Mol Ecol. 2008. PMID: 19140982 Review.
  • Getting positive about selection.
    Koonin EV, Rogozin IB. Koonin EV, et al. Genome Biol. 2003;4(8):331. doi: 10.1186/gb-2003-4-8-331. Epub 2003 Jul 23. Genome Biol. 2003. PMID: 12914654 Free PMC article.
  • Linnaeus at 300: we are family.
    Whitfield J. Whitfield J. Nature. 2007 Mar 15;446(7133):247-9. doi: 10.1038/446247a. Nature. 2007. PMID: 17361152 No abstract available.
  • Evolution by gene loss.
    Albalat R, Cañestro C. Albalat R, et al. Nat Rev Genet. 2016 Jul;17(7):379-91. doi: 10.1038/nrg.2016.39. Epub 2016 Apr 18. Nat Rev Genet. 2016. PMID: 27087500 Review.
  • What is a genome?
    Stencel A, Crespi B. Stencel A, et al. Mol Ecol. 2013 Jul;22(13):3437-43. doi: 10.1111/mec.12355. Mol Ecol. 2013. PMID: 23967454

Cited by

References

    1. Sarkar S. The genomic challenge to adaptationism. Brit J for the Philos Sci 66: 505–536.
    1. Lynch M. The origins of genome architecture. Sunderland MA: Sinauer Associates; 2007.
    1. Doolittle WF. Is junk DNA bunk? A critique of ENCODE. Proc Natl Acad Sci USA 2013; 110:5294–5300. 10.1073/pnas.1221376110 - DOI - PMC - PubMed
    1. Elliott TA, Linquist S, Gregory TR. Conceptual and empirical challenges of ascribing functions to transposable elements. The American Naturalist 2014; 184: 14–2. 10.1086/676588 - DOI - PubMed
    1. Brunet TDP, Doolittle WF. Getting “function” right. Proc Natl Acad Sci USA 2014; 111: E3365 10.1073/pnas.1409762111 - DOI - PMC - PubMed

Publication types

Grants and funding

Financial support for this research was provided by the Social Sciences and Humanities Research Council of Canada (https://www.sshrc-crsh.gc.ca/, grant #430335) to Stefan Linquist and by the Natural Sciences and Engineering Research Council of Canada (nserc-crsng.gc.ca, grant # GLDSU44989) to W. Ford Doolittle. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.