Criteria for inference of chromothripsis in cancer genomes
- PMID: 23498933
- DOI: 10.1016/j.cell.2013.02.023
Criteria for inference of chromothripsis in cancer genomes
Abstract
Chromothripsis scars the genome when localized chromosome shattering and repair occurs in a one-off catastrophe. Outcomes of this process are detectable as massive DNA rearrangements affecting one or a few chromosomes. Although recent findings suggest a crucial role of chromothripsis in cancer development, the reproducible inference of this process remains challenging, requiring that cataclysmic one-off rearrangements be distinguished from localized lesions that occur progressively. We describe conceptual criteria for the inference of chromothripsis, based on ruling out the alternative hypothesis that stepwise rearrangements occurred. Robust means of inference may facilitate in-depth studies on the impact of, and the mechanisms underlying, chromothripsis.
Copyright © 2013 Elsevier Inc. All rights reserved.
Similar articles
-
In Brief: Chromothripsis and cancer.J Pathol. 2013 Sep;231(1):1-3. doi: 10.1002/path.4220. J Pathol. 2013. PMID: 23744564
-
Mechanistic origins of diverse genome rearrangements in cancer.Semin Cell Dev Biol. 2022 Mar;123:100-109. doi: 10.1016/j.semcdb.2021.03.003. Epub 2021 Apr 3. Semin Cell Dev Biol. 2022. PMID: 33824062 Free PMC article. Review.
-
Stress induced by premature chromatin condensation triggers chromosome shattering and chromothripsis at DNA sites still replicating in micronuclei or multinucleate cells when primary nuclei enter mitosis.Mutat Res Genet Toxicol Environ Mutagen. 2015 Nov;793:185-98. doi: 10.1016/j.mrgentox.2015.07.014. Epub 2015 Jul 29. Mutat Res Genet Toxicol Environ Mutagen. 2015. PMID: 26520389
-
Chromothripsis and cancer: causes and consequences of chromosome shattering.Nat Rev Cancer. 2012 Oct;12(10):663-70. doi: 10.1038/nrc3352. Epub 2012 Sep 13. Nat Rev Cancer. 2012. PMID: 22972457 Review.
-
Scrambling the genome in cancer: causes and consequences of complex chromosome rearrangements.Nat Rev Genet. 2024 Mar;25(3):196-210. doi: 10.1038/s41576-023-00663-0. Epub 2023 Nov 8. Nat Rev Genet. 2024. PMID: 37938738 Free PMC article. Review.
Cited by
-
Multi-omic and single-cell profiling of chromothriptic medulloblastoma reveals genomic and transcriptomic consequences of genome instability.Nat Commun. 2024 Nov 23;15(1):10183. doi: 10.1038/s41467-024-54547-w. Nat Commun. 2024. PMID: 39580568 Free PMC article.
-
Evaluating the impact of Xanthoparmelia conspersa extracts on signaling in HeLa cells and exploring their diverse biological activities.Sci Rep. 2024 Nov 18;14(1):28531. doi: 10.1038/s41598-024-73599-y. Sci Rep. 2024. PMID: 39557857 Free PMC article.
-
Chromothripsis in cancer.Nat Rev Cancer. 2024 Nov 15. doi: 10.1038/s41568-024-00769-5. Online ahead of print. Nat Rev Cancer. 2024. PMID: 39548283 Review.
-
Engineering structural variants to interrogate genome function.Nat Genet. 2024 Nov 12. doi: 10.1038/s41588-024-01981-7. Online ahead of print. Nat Genet. 2024. PMID: 39533047 Review.
-
Genomic and transcriptomic landscape of human gastrointestinal stromal tumors.Nat Commun. 2024 Nov 3;15(1):9495. doi: 10.1038/s41467-024-53821-1. Nat Commun. 2024. PMID: 39489749 Free PMC article.
Publication types
MeSH terms
Grants and funding
LinkOut - more resources
Full Text Sources
Other Literature Sources