Reclassification of marine Agrobacterium species: Proposals of Stappia stellulata gen. nov., comb. nov., Stappia aggregata sp. nov., nom. rev., Ruegeria atlantica gen. nov., comb. nov., Ruegeria gelatinovora comb. nov., Ruegeria algicola comb. nov., and Ahrensia kieliense gen. nov., sp. nov., nom. rev
- PMID: 12501429
- DOI: 10.2323/jgam.44.201
Reclassification of marine Agrobacterium species: Proposals of Stappia stellulata gen. nov., comb. nov., Stappia aggregata sp. nov., nom. rev., Ruegeria atlantica gen. nov., comb. nov., Ruegeria gelatinovora comb. nov., Ruegeria algicola comb. nov., and Ahrensia kieliense gen. nov., sp. nov., nom. rev
Abstract
The bootstrapped 16S rDNA sequence-based neighbor-joining phylogeny has suggested that the marine species of the genus Agrobacterium have no relation to the terrestrial Agrobacterium species. Agrobacterium atlanticum IAM 14463(T) (a superscript (T)=type strain), Agrobacterium ferrugineum IAM 12616(T), Agrobacterium gelatinovorum IAM 12617(T), Agrobacterium meteori IAM 14464(T), Agrobacterium stellulatum IAM 12621(T) and IAM 12614, and the invalidly published marine species "Agrobacterium kieliense" IAM 12618 occupy an independent position in the a-subclass of the Proteobacteria. Based on 16S rDNA sequencing and on chemotaxonomic, morphological, and physiological studies, we propose the transfer of A. atlanticum, A. gelatinovorum, and Roseobacter algicola to the genus Ruegeria gen. nov. as Ruegeria atlantica comb. nov., Ruegeria gelatinovora comb. nov., and Ruegeria algicola comb. nov., respectively; of strains of A. stellulatum to the genus Stappia gen. nov. as Stappia stellulata comb. nov. and Stappia aggregata sp. nov., nom. rev., respectively; and of "A. kieliense" to the genus Ahrensia gen. nov. as Ahrensia kieliense sp. nov., nom. rev. Agrobacterium meteori is assigned to be a synonym of A. atlanticum.
Similar articles
-
Marine star-shaped-aggregate-forming bacteria: Agrobacterium atlanticum sp. nov.; Agrobacterium meteori sp. nov.; Agrobacterium ferrugineum sp. nov., nom. rev.; Agrobacterium gelatinovorum sp. nov., nom. rev.; and Agrobacterium stellulatum sp. nov., nom. rev.Int J Syst Bacteriol. 1992 Jan;42(1):133-43. doi: 10.1099/00207713-42-1-133. Int J Syst Bacteriol. 1992. PMID: 1371058
-
Reclassification of Roseobacter gallaeciensis Ruiz-Ponte et al. 1998 as Phaeobacter gallaeciensis gen. nov., comb. nov., description of Phaeobacter inhibens sp. nov., reclassification of Ruegeria algicola (Lafay et al. 1995) Uchino et al. 1999 as Marinovum algicola gen. nov., comb. nov., and emended descriptions of the genera Roseobacter, Ruegeria and Leisingera.Int J Syst Evol Microbiol. 2006 Jun;56(Pt 6):1293-1304. doi: 10.1099/ijs.0.63724-0. Int J Syst Evol Microbiol. 2006. PMID: 16738106
-
Reclassification of Xanthomonas campestris pv. citri (ex Hasse 1915) Dye 1978 forms A, B/C/D, and E as X. smithii subsp. citri (ex Hasse) sp. nov. nom. rev. comb. nov., X. fuscans subsp. aurantifolii (ex Gabriel 1989) sp. nov. nom. rev. comb. nov., and X. alfalfae subsp. citrumelo (ex Riker and Jones) Gabriel et al., 1989 sp. nov. nom. rev. comb. nov.; X. campestris pv malvacearum (ex smith 1901) Dye 1978 as X. smithii subsp. smithii nov. comb. nov. nom. nov.; X. campestris pv. alfalfae (ex Riker and Jones, 1935) dye 1978 as X. alfalfae subsp. alfalfae (ex Riker et al., 1935) sp. nov. nom. rev.; and "var. fuscans" of X. campestris pv. phaseoli (ex Smith, 1987) Dye 1978 as X. fuscans subsp. fuscans sp. nov.Syst Appl Microbiol. 2005 Aug;28(6):494-518. doi: 10.1016/j.syapm.2005.03.017. Syst Appl Microbiol. 2005. PMID: 16104350
-
Review of the genus Methylobacterium and closely related organisms: a proposal that some Methylobacterium species be reclassified into a new genus, Methylorubrum gen. nov.Int J Syst Evol Microbiol. 2018 Sep;68(9):2727-2748. doi: 10.1099/ijsem.0.002856. Epub 2018 Jul 19. Int J Syst Evol Microbiol. 2018. PMID: 30024371 Review.
-
Taiwanoshaira Lee & Beenen, a new genus and first record of moss-inhabiting Galerucinaesensu stricto (Coleoptera, Chrysomelidae) from Taiwan.Zookeys. 2020 Jun 30;944:129-146. doi: 10.3897/zookeys.944.53099. eCollection 2020. Zookeys. 2020. PMID: 32684777 Free PMC article. Review.
Cited by
-
Collagenase and Tyrosinase Inhibitory Compounds from Fish Gut Bacteria Ruegeria atlantica and Pseudoalteromonas neustonica.ACS Omega. 2024 Jul 29;9(32):34259-34267. doi: 10.1021/acsomega.3c09585. eCollection 2024 Aug 13. ACS Omega. 2024. PMID: 39157099 Free PMC article.
-
The Diversity and Metabolism of Culturable Nitrate-Reducing Bacteria from the Photic Zone of the Western North Pacific Ocean.Microb Ecol. 2023 Nov;86(4):2781-2789. doi: 10.1007/s00248-023-02284-w. Epub 2023 Aug 8. Microb Ecol. 2023. PMID: 37552473 Free PMC article.
-
Ruegeria alba sp. nov., Isolated from a Tidal Flat Sediment.Curr Microbiol. 2022 Jul 26;79(9):267. doi: 10.1007/s00284-022-02968-5. Curr Microbiol. 2022. PMID: 35881206
-
The digestive tract sections of the sea cucumber Isostichopus badionotus reveal differences in composition, diversity, and functionality of the gut microbiota.Arch Microbiol. 2022 Jul 6;204(8):463. doi: 10.1007/s00203-022-03080-9. Arch Microbiol. 2022. PMID: 35792945
-
Stappia sediminis sp. nov., isolated from rhizosphere soil of coastal herb Zoysia matrella within the Beibu Gulf.Arch Microbiol. 2022 Feb 15;204(3):174. doi: 10.1007/s00203-021-02674-z. Arch Microbiol. 2022. PMID: 35166945
LinkOut - more resources
Full Text Sources
Molecular Biology Databases