MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
Post-analysis of immune repertoire sequencing data
🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.
⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
Python SDK for Immune Epitope Database (IEDB) Analysis Tools API
T-cell motility simulator
Bayesian models used in CD56bright natural killer cells preferentially kill proliferating CD4+ T cells
This neural-network can predict the effector/memory T cell (T lymphocyte) subset of single cells based on flow cytometry data with 99,22% accuracy.
TCR Enrichment Analysis (TEA) Webtool
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