data_NAG
#
_chem_comp.id NAG
_chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose
_chem_comp.type "D-saccharide, beta linking"
_chem_comp.pdbx_type ATOMS
_chem_comp.formula "C8 H15 N O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
;
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 221.208
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NAG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8PCH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 NAG N-acetyl-beta-D-glucosamine PDB ?
2 NAG 2-acetamido-2-deoxy-beta-D-glucose PDB ?
3 NAG 2-acetamido-2-deoxy-D-glucose PDB ?
4 NAG 2-acetamido-2-deoxy-glucose PDB ?
5 NAG N-ACETYL-D-GLUCOSAMINE PDB ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NAG C1 C1 C 0 1 N N R N N N 7.396 28.163 26.662 0.185 1.082 -0.421 C1 NAG 1
NAG C2 C2 C 0 1 N N R N N N 6.973 29.233 27.644 0.790 -0.220 0.112 C2 NAG 2
NAG C3 C3 C 0 1 N N R N N N 7.667 29.055 29.000 -0.124 -1.390 -0.265 C3 NAG 3
NAG C4 C4 C 0 1 N N S N N N 7.573 27.588 29.490 -1.526 -1.129 0.294 C4 NAG 4
NAG C5 C5 C 0 1 N N R N N N 7.902 26.592 28.373 -2.042 0.207 -0.246 C5 NAG 5
NAG C6 C6 C 0 1 N N N N N N 7.599 25.173 28.797 -3.417 0.504 0.355 C6 NAG 6
NAG C7 C7 C 0 1 N N N N N N 6.291 31.299 26.595 3.197 0.157 0.076 C7 NAG 7
NAG C8 C8 C 0 1 N N N N N N 6.684 32.649 26.036 4.559 -0.052 -0.533 C8 NAG 8
NAG N2 N2 N 0 1 N N N N N N 7.268 30.545 27.089 2.114 -0.422 -0.480 N2 NAG 9
NAG O1 O1 O 0 1 N Y N N N N 6.676 28.363 25.419 1.003 2.185 -0.024 O1 NAG 10
NAG O3 O3 O 0 1 N N N N N N 7.038 29.909 29.947 0.395 -2.600 0.291 O3 NAG 11
NAG O4 O4 O 0 1 N N N N N N 8.494 27.358 30.574 -2.405 -2.180 -0.114 O4 NAG 12
NAG O5 O5 O 0 1 N N N N N N 7.104 26.875 27.206 -1.130 1.248 0.113 O5 NAG 13
NAG O6 O6 O 0 1 N N N N N N 6.232 25.040 29.165 -3.949 1.691 -0.236 O6 NAG 14
NAG O7 O7 O 0 1 N N N N N N 5.114 30.936 26.562 3.074 0.845 1.067 O7 NAG 15
NAG H1 H1 H 0 1 N N N N N N 8.477 28.257 26.481 0.133 1.040 -1.509 H1 NAG 16
NAG H2 H2 H 0 1 N N N N N N 5.888 29.146 27.803 0.879 -0.163 1.197 H2 NAG 17
NAG H3 H3 H 0 1 N N N N N N 8.729 29.321 28.892 -0.174 -1.478 -1.350 H3 NAG 18
NAG H4 H4 H 0 1 N N N N N N 6.544 27.403 29.831 -1.483 -1.091 1.382 H4 NAG 19
NAG H5 H5 H 0 1 N N N N N N 8.971 26.674 28.128 -2.123 0.154 -1.332 H5 NAG 20
NAG H61 H61 H 0 1 N N N N N N 7.816 24.492 27.961 -4.088 -0.333 0.157 H61 NAG 21
NAG H62 H62 H 0 1 N N N N N N 8.232 24.910 29.657 -3.320 0.645 1.431 H62 NAG 22
NAG H81 H81 H 0 1 N N N N N N 5.791 33.159 25.646 4.560 0.320 -1.558 H81 NAG 23
NAG H82 H82 H 0 1 N N N N N N 7.136 33.258 26.833 5.305 0.490 0.050 H82 NAG 24
NAG H83 H83 H 0 1 N N N N N N 7.411 32.511 25.222 4.799 -1.115 -0.532 H83 NAG 25
NAG HN2 HN2 H 0 1 N N N N N N 8.210 30.881 27.079 2.212 -0.973 -1.273 HN2 NAG 26
NAG HO1 HO1 H 0 1 N Y N N N N 6.933 27.696 24.793 0.679 3.044 -0.328 HO1 NAG 27
NAG HO3 HO3 H 0 1 N Y N N N N 7.459 29.809 30.793 -0.135 -3.384 0.091 HO3 NAG 28
NAG HO4 HO4 H 0 1 N Y N N N N 8.425 26.456 30.863 -3.312 -2.079 0.206 HO4 NAG 29
NAG HO6 HO6 H 0 1 N Y N N N N 6.060 24.143 29.428 -4.822 1.940 0.099 HO6 NAG 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NAG C1 C2 SING N N 1
NAG C1 O1 SING N N 2
NAG C1 O5 SING N N 3
NAG C1 H1 SING N N 4
NAG C2 C3 SING N N 5
NAG C2 N2 SING N N 6
NAG C2 H2 SING N N 7
NAG C3 C4 SING N N 8
NAG C3 O3 SING N N 9
NAG C3 H3 SING N N 10
NAG C4 C5 SING N N 11
NAG C4 O4 SING N N 12
NAG C4 H4 SING N N 13
NAG C5 C6 SING N N 14
NAG C5 O5 SING N N 15
NAG C5 H5 SING N N 16
NAG C6 O6 SING N N 17
NAG C6 H61 SING N N 18
NAG C6 H62 SING N N 19
NAG C7 C8 SING N N 20
NAG C7 N2 SING N N 21
NAG C7 O7 DOUB N N 22
NAG C8 H81 SING N N 23
NAG C8 H82 SING N N 24
NAG C8 H83 SING N N 25
NAG N2 HN2 SING N N 26
NAG O1 HO1 SING N N 27
NAG O3 HO3 SING N N 28
NAG O4 HO4 SING N N 29
NAG O6 HO6 SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NAG SMILES ACDLabs 12.01 "O=C(NC1C(O)C(O)C(OC1O)CO)C"
NAG InChI InChI 1.03 "InChI=1S/C8H15NO6/c1-3(11)9-5-7(13)6(12)4(2-10)15-8(5)14/h4-8,10,12-14H,2H2,1H3,(H,9,11)/t4-,5-,6-,7-,8-/m1/s1"
NAG InChIKey InChI 1.03 OVRNDRQMDRJTHS-FMDGEEDCSA-N
NAG SMILES_CANONICAL CACTVS 3.370 "CC(=O)N[C@H]1[C@H](O)O[C@H](CO)[C@@H](O)[C@@H]1O"
NAG SMILES CACTVS 3.370 "CC(=O)N[CH]1[CH](O)O[CH](CO)[CH](O)[CH]1O"
NAG SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O)CO)O)O"
NAG SMILES "OpenEye OEToolkits" 1.7.6 "CC(=O)NC1C(C(C(OC1O)CO)O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NAG "SYSTEMATIC NAME" ACDLabs 12.01 "2-(acetylamino)-2-deoxy-beta-D-glucopyranose"
NAG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[(2R,3R,4R,5S,6R)-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl]ethanamide"
NAG "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DGlcpNAcb
NAG "COMMON NAME" GMML 1.0 N-acetyl-b-D-glucopyranosamine
NAG "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-D-GlcpNAc
NAG "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 GlcNAc
#
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
NAG "CARBOHYDRATE ISOMER" D PDB ?
NAG "CARBOHYDRATE RING" pyranose PDB ?
NAG "CARBOHYDRATE ANOMER" beta PDB ?
NAG "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NAG "Create component" 1999-07-08 RCSB
NAG "Modify descriptor" 2011-06-04 RCSB
NAG "Modify leaving atom flag" 2011-07-01 RCSB
NAG "Modify leaving atom flag" 2012-11-26 RCSB
NAG "Other modification" 2019-08-12 RCSB
NAG "Other modification" 2019-12-19 RCSB
NAG "Other modification" 2020-07-03 RCSB
NAG "Modify name" 2020-07-17 RCSB
NAG "Modify synonyms" 2020-07-17 RCSB
NAG "Modify PCM" 2024-09-27 PDBE
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 NAG ASN N-Glycosylation Carbohydrate "Amino-acid side chain" "Any position" C1 ND2 ? ?
2 NAG ARG N-Glycosylation Carbohydrate "Amino-acid side chain" "Any position" C1 NH1 ? ?
3 NAG ARG N-Glycosylation Carbohydrate "Amino-acid side chain" "Any position" C1 NH2 ? ?
4 NAG CYS S-Glycosylation Carbohydrate "Amino-acid side chain" "Any position" C1 SG ? ?
5 NAG SER O-Glycosylation Carbohydrate "Amino-acid side chain" "Any position" C1 OG ? ?
6 NAG THR O-Glycosylation Carbohydrate "Amino-acid side chain" "Any position" C1 OG1 ? ?
7 NAG ARG None Carbohydrate "Amino-acid side chain" "Any position" O7 NH1 ? ?
8 NAG ASN None Carbohydrate "Amino-acid side chain" "Any position" C4 ND2 ? ?
9 NAG ASN None Carbohydrate "Amino-acid side chain" "Any position" O3 ND2 ? ?
10 NAG EW6 None Carbohydrate "Amino-acid side chain" "Any position" C1 OG ? ?
11 NAG LYS None Carbohydrate "Amino-acid side chain" "Any position" O6 NZ ? ?
12 NAG OMX None Carbohydrate "Amino-acid side chain" "Any position" C1 OC ? ?
13 NAG OMY None Carbohydrate "Amino-acid side chain" "Any position" C1 ODE ? ?
14 NAG YCM None Carbohydrate "Amino-acid side chain" "Any position" C1 NZ2 ? ?
#
