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Link to original content: https://dx.doi.org/10.1007/s00606-017-1466-z
Molecular phylogeny and genetic diversity of genus Capparis (Capparaceae) based on plastid DNA sequences and ISSR markers | Plant Systematics and Evolution Skip to main content
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Molecular phylogeny and genetic diversity of genus Capparis (Capparaceae) based on plastid DNA sequences and ISSR markers

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Abstract

Capparis (Capparaceae) has been used as a medicinal plant since ancient time. Capparis species were divided into Old World and New World taxa as described by the sectional division of Capparis. However, plastid DNA sequence data of Indian Capparis species were not analyzed in previous phylogenetic studies. Here, we have added Indian Capparis data in previous phylogeny and analyzed the relationship of Indian Capparis with Old World and New World taxa. The plastid phylogeny presented here includes Capparis taxa from its major distribution areas, New World and African capparoids. The presented phylogeny is used for the determination of biogeographic history of Capparis and recently segregated genera. Phylogenetic analyses of the combined plastid data revealed that the Indian Capparis are more closely related to Old World taxa and have connections with African, Australian and Eastern Asian species. Sectional classification of Old World and Indian Capparis considered in this study is reflected from the presented plastid phylogeny. The ancestral area reconstruction using Bayesian Binary Markov Chain Monte Carlo method strongly supports for the Africa as the ancestral region for both Old World and New World Capparis. Molecular marker-based genetic diversity studies on Indian Capparis are scarce. This work also includes the genetic diversity study of Indian Capparis species. Utility and efficacy of ISSR markers to study inter- and intraspecies variation in Capparis is evident from the AMOVA results.

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Acknowledgements

We would like to thank Avinash Gholave, Pragati Thonge, Rohit Mane and Ganesh Pawar from Department of Botany, Shivaji University for assistance in field collections. We also thank to Dr. Manoj Lekhak (Department of Botany, Shivaji University, Kolhapur) for his help in field collection as well as in identification of some Capparis species. Authors are thankful to the Department of Biotechnology, New Delhi, India, for funding under Interdisciplinary Program of Life Sciences for advanced Research and Education (IPLS) (Grant No. BT/PR4572/INF/22/147/2012) to Shivaji University, Kolhapur, India. S.P. Govindwar would like to thank The Korean Federation of Science and Technology Societies, South Korea, for providing Brain Pool Fellowship (Grant Number 172S-5-3-1917).

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Authors and Affiliations

  1. Department of Biochemistry, Shivaji University, Kolhapur, 416004, India

    Asif S. Tamboli, Aatiya A. Gothe & Sanjay P. Govindwar

  2. Department of Botany, Shivaji University, Kolhapur, 416004, India

    Pradnya B. Yadav & Shrirang R. Yadav

  3. Department of Earth Resources and Environmental Engineering, Hanyang University, Seoul, 04763, South Korea

    Sanjay P. Govindwar

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  1. Asif S. Tamboli
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Correspondence to Sanjay P. Govindwar.

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Additional information

Handling editor: Eric Schranz.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Online Resource 1

GenBank accession numbers of rbcL and matK sequences for Capparis species included in phylogenetic analyses with their respective section and justification related to sections assignments for Capparis species (PDF 203 kb)

Online Resource 2

Maximum parsimony and Bayesian phylogenetic analysis based on combined data, and Maximum likelihood analysis based on individual regions rbcL and matK (PDF 1216 kb)

Online Resource 3

Distribution codes for Capparis species used in biogeographic analysis and RASP program output for BBM analysis for important nodes discussed in this study (PDF 112 kb)

Online Resource 4

ISSR profiling images for Indian Capparis (PDF 619 kb)

Online Resource 5

The alignment matrix of the combined (rbcL+matK) data (FAS 74 kb)

Information on Electronic Supplementary Material

Information on Electronic Supplementary Material

Online Resource 1. GenBank accession numbers of rbcL and matK sequences for Capparis species included in phylogenetic analyses with their respective section and justification related to sections assignments for Capparis species.

Online Resource 2. Maximum parsimony and Bayesian phylogenetic analysis based on combined data, and Maximum likelihood analysis based on individual regions rbcL and matK.

Online Resource 3. Distribution codes for Capparis species used in biogeographic analysis and RASP program output for BBM analysis for important nodes discussed in this study.

Online Resource 4. ISSR profiling images for Indian Capparis.

Online Resource 5. The alignment matrix of the combined (rbcL+matK) data.

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Tamboli, A.S., Yadav, P.B., Gothe, A.A. et al. Molecular phylogeny and genetic diversity of genus Capparis (Capparaceae) based on plastid DNA sequences and ISSR markers. Plant Syst Evol 304, 205–217 (2018). https://doi.org/10.1007/s00606-017-1466-z

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