Abstract
This paper describes several experiments that prove that standard motion correction methods may induce spurious activations in some motion-free fMRI studies. This artefact stems from the fact that activated areas behave like biasing outliers for the least square based measure usually driving such registration methods. This effect is demonstrated first using a motion-free simulated time series including artificial activation-like signal changes. Several additional simulations explore the influence of activation on registration accuracy for a wide-range of simulated misregistrations. The effect is finally highlighted on an actual time series obtained from a 3T magnet. All the experiments are performed using four different realignment methods, which allows us to show that the problem is overcome by methods based on robust similarity measures like mutual information.
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Hajnal, J. V., Mayers, R., Oatridge, A., Schwieso, J. E., Young, I. R., and Bydder, G. M.: Artefacts due to stimulus correlated motion in functional imaging of the brain. Magn. Reson. Med. 31 (1994) 289–291
Grootoonk, S., Hutton, C., Ashburner, J., Howseman, A. M., Josephs, O., Rees, G., Friston, K. J., and Turner, R.: Characterization and correction of interpolation effects in the realignment of fMRI time series. NeuroImage, 11 (2000) 49–57
Friston, K. J., Williams, S., Howard, R., Frackowiak, R. S. J., and Turner, R.: Movement-related effects in fMRI time-series. Magn. Reson. Med. 35 (1996) 346–355
Robson, M. D., Gatenby, J. C., Anderson, A.W., and Gore, J. C.: Practical considerations when correcting for movement-related effects present in fMRI time-series. In Proc. ISMRM 5th. Annual Meeting, Vancouver, (1997) 1681
Birn, R. M., Jesmanowicz, A., Cor, R., and Shaker, R.: Correction of dynamic Bz-field artifacts in EPI, in Proc. ISMRM 5th Annual Meeting, Vancouver, (1997) 1913
Wu, D. H., Lewin, J. S., and Duerl, J. L.: Inadequacy of motion correction algorithms in functional MRI: role of susceptibility-induced artefacts. J. Mag. Res. Image. 7 (1997) 365–370
Woods, R. P., Cherry, S. R., and Mazziotta, J. C.: Rapid automated algorithm for aligning and reslicing PET images, J. Comput. Assist. Tomogr. 16 (1992) 620–633
Woods, R. P., Grafton S. T., Holmes C. J., Cherry, S. R., and Mazziotta, J. C.: Automated image registration: I. General methods and intrasubject, intramodality validation. JCAT, 22(1) (1998) 139–152
Wells W. M., Viola P., Atsumi H., and Nakajima S.: Multi-modal volume registration by maximization of mutual information. Medical Image Analysis, 1(1) (1996) 35–51
Maes F., Collignon A. Vanderneulen D., Marchal G., and Suetens P.: Multimodality image registration by maximization of mutual information. IEEE Trans. Med. Imag., 16(2) (1997) 187–198
Viola P. and Wells W. M.: Alignment by maximization of mutual information. International Journal of Computer Vision, 24(2) (1997) 137–154
Studholme C., Hill D. L. G., and Hawkes D. J.: Automated three-dimensional registration of magnetic resonance and positron emission tomography brain images by multiresolution optimization of voxel similarity measures. Medical Physics, 24(1) (1997) 25–35
Meyer C. R., Boes J. L., Kim B., Bland P. H., Zasadny K. R., Kison P. V., Koral K., Frey K. A., and Wahl R. L.: Demonstration of accuracy and clinical versatility of mutual information for automatic multimodality image fusion using affine and thin-plate spline warped geometric deformations. Medical Image Analysis, 1(3) (1997) 195–206
Jezzard P. and Clare S.: Sources of distortions in functional MRI data. Hum. Brain Mapp. 8 (1999) 80–85
Jiang A. P., Kennedy D. N., Baker J. R., Weiskoff R. M., Tootell R. B. H., Woods R. P., Benson R. R., Kwong K. K., Brady T. J., Rosen B. R., and Belliveau J. W.: Motion detection and correction in functional MR imaging. Hum. Brain Mapp. 3 (1995) 224–235
Frouin V., Messegue E., and Mangin J.-F.: Assessment of two fMRI motion correction algorithms. Hum. Brain Mapp. 5 (1997) S458
West J. et al.: Comparison and evaluation of retrospective intermodality brain image registration techniques. J. Comput. Assist. Tomogr. 21(4) (1997) 554–566
Holden M., Hill D. L. G., Denton E. R. E., Jarosz J. M., Cox T. C. S., Rohlfing T., Goodey J., and Hawkes D. J.: Voxel similarity measures for 3D serial MR brain image registration, IEEE Trans. Med. Imag. 19(2) (2000) 94–102.
Friston K. J., Ahsburner J., Frith C. D., Poline J.-B., Heather J. D., and Frackowiak R. S. J.: Spatial registration and normalization of images. Hum. Brain Mapp. 2 (1995) 165–189
Unser M., Aldroubi A., and Eden M.: B-Spline Signal Processing: Part I-Theory, IEEE Transactions on Signal Processing, 41(2) (1993) 821–832
Unser M., Aldroubi A., and Eden M.: B-Spline Signal Processing: Part II-Efficient Design and Applications, IEEE Transactions on Signal Processing, (2) (1993) 834–848
Andersson J. L. R.: How to estimate global activity independent of changes in local activity, NeuroImage, 6 (1997) 237–244
Maintz J. B. A. and Viergever M. A.: A survey of medical image registration. Medical Image Analysis, 2(1) (1998) 1–36
Roche A., Malandain G., Pennec X., and Ayache N.: The correlation ratio as a new similarity measure for multimodal image registration. In Proc. MICCAI98, LNCS-1496, Springer Verlag, (1998) 1115–1124
Studholme C., Hill D. L. G., and Hawkes D. J.: An overlap invariant entropy measure of 3D medical image alignment. Pattern Recognition, 32(1) (1999) 71–86
Pluim J. P. W., Maintz J. B., and Viergever M.: Image registration by maximization of combined mutual information and gradient information, In Proc. MICCAI00, LNCS-1935, Springer Verlag, (2000) 452–461
Nicou C., Heitz F., Armspach J.-P., Namer I.-J., and Grucker D.: Registration of MR/MR and MR/SPECT brain images by fast stochastic optimization of robust voxel similarity measures, NeuroImage 8(1) (1998) 30–43
Roche A., Pennec X., Rudolph M., Auer D. P., Malandain G., Ourselin S., Auer L. M., and Ayache N.: Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR images. In Proc. MICCAI00, Pittsburgh, USA, LNCS-1935, Springer Verlag (2000) 567–577
Pluim J. P. W., Maintz J. B., and Viergever M.: Interpolation artefacts in mutual information-based image registration, Computer Vision and Image Understanding 77 (2000) 211–232
Jenkinson M., and Smith S. M.: A global method for robust affine registration of brain images, Medical Image Analysis (2001, in press).
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Freire, L., Mangin, JF. (2001). Motion Correction Algorithms of the Brain Mapping Community Create Spurious Functional Activations. In: Insana, M.F., Leahy, R.M. (eds) Information Processing in Medical Imaging. IPMI 2001. Lecture Notes in Computer Science, vol 2082. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-45729-1_27
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DOI: https://doi.org/10.1007/3-540-45729-1_27
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