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2020 – today
- 2022
[j36]Liheng Luo, Michael Gribskov, Sufang Wang
:
Bibliometric review of ATAC-Seq and its application in gene expression. Briefings Bioinform. 23(3) (2022)- 2020
- [j35]Xiangying Sun, Zhezhen Wang, Johnathon M. Hall, Carlos Perez-Cervantes, Alexander J. Ruthenburg, Ivan P. Moskowitz, Michael Gribskov, Xinan Holly Yang:
Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq. PLoS Comput. Biol. 16(2) (2020)
2010 – 2019
- 2019
- [j34]Junhui Wang, Michael Gribskov:
IRESpy: an XGBoost model for prediction of internal ribosome entry sites. BMC Bioinform. 20(1): 409:1-409:15 (2019) - [j33]Mengmeng Zhu, Michael Gribskov:
MiPepid: MicroPeptide identification tool using machine learning. BMC Bioinform. 20(1): 559:1-559:11 (2019) - [e4]Shoba Ranganathan, Michael Gribskov, Kenta Nakai, Christian Schönbach:
Encyclopedia of Bioinformatics and Computational Biology - Volume 1. Elsevier 2019, ISBN 978-0-12-811432-2 [contents] - [e3]Shoba Ranganathan, Michael Gribskov, Kenta Nakai, Christian Schönbach:
Encyclopedia of Bioinformatics and Computational Biology - Volume 2. Elsevier 2019, ISBN 978-0-12-811432-2 [contents] - [e2]Shoba Ranganathan, Michael Gribskov, Kenta Nakai, Christian Schönbach:
Encyclopedia of Bioinformatics and Computational Biology - Volume 3. Elsevier 2019, ISBN 978-0-12-811432-2 [contents] - [r2]Xiangying Sun, Michael Gribskov:
MicroRNA and lncRNA Databases and Analysis. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 165-170 - [r1]Michael Gribskov:
Identification of Sequence Patterns, Motifs and Domains. Encyclopedia of Bioinformatics and Computational Biology (3) 2019: 332-340 - 2018
- [j32]Khaleel Mershad, Qutaibah M. Malluhi, Mourad Ouzzani, MingJie Tang, Michael Gribskov, Walid G. Aref:
AUDIT: approving and tracking updates with dependencies in collaborative databases. Distributed Parallel Databases 36(1): 81-119 (2018) - [j31]Khaleel Mershad, Qutaibah M. Malluhi, Mourad Ouzzani, MingJie Tang, Michael Gribskov, Walid G. Aref, Deo Prakash:
COACT: a query interface language for collaborative databases. Distributed Parallel Databases 36(1): 121-151 (2018) - 2017
- [j30]Sufang Wang, Michael Gribskov:
Comprehensive evaluation of de novo transcriptome assembly programs and their effects on differential gene expression analysis. Bioinform. 33(3): 327-333 (2017) - [j29]Biaobin Jiang, Kyle Kloster, David F. Gleich, Michael Gribskov:
AptRank: an adaptive PageRank model for protein function prediction on bi-relational graphs. Bioinform. 33(12): 1829-1836 (2017) - [j28]Hao Peng, Yifan Yang, Shandian Zhe, Jian Wang, Michael Gribskov, Yuan Qi:
DEIsoM: a hierarchical Bayesian model for identifying differentially expressed isoforms using biological replicates. Bioinform. 33(19): 3018-3027 (2017) - [c7]Gladys K. Andino, Marisa Brazil, Michael Gribskov, Preston M. Smith:
Advancing the Representation of Women in HPC at Purdue University. PEARC 2017: 56:1-56:3 - 2016
- [j27]Sufang Wang, Michael Gribskov, Tony R. Hazbun, Pete E. Pascuzzi:
CellMiner Companion: an interactive web application to explore CellMiner NCI-60 data. Bioinform. 32(15): 2399-2401 (2016) - [i1]Biaobin Jiang, Kyle Kloster, David F. Gleich, Michael Gribskov:
AptRank: an adaptive PageRank model for protein function prediction on bi-relational graphs. CoRR abs/1601.05506 (2016) - 2015
- [j26]Yuta Otsuka, Ai Muto, Rikiya Takeuchi, Chihiro Okada, Motokazu Ishikawa, Koichiro Nakamura, Natsuko Yamamoto, Hitomi Dose, Kenji Nakahigashi, Shigeki Tanishima, Sivasundaram Suharnan, Wataru Nomura, Toru Nakayashiki, Walid G. Aref, Barry R. Bochner, Tyrrell Conway, Michael Gribskov, Daisuke Kihara, Kenneth E. Rudd, Yukako Tohsato, Barry L. Wanner, Hirotada Mori:
GenoBase: comprehensive resource database of Escherichia coli K-12. Nucleic Acids Res. 43(Database-Issue): 606-617 (2015) - [c6]Gladys K. Andino, Michael Gribskov, Greg J. Hunt, Denis Anderson, Jay D. Evans:
Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera). BIBM 2015: 1715-1716 - [c5]Muyi Liu, Michael Gribskov:
MMC-margin: Identification of maximum frequent subgraphs by metropolis Monte Carlo sampling. IEEE BigData 2015: 849-856 - [c4]Biaobin Jiang, David F. Gleich, Michael Gribskov:
Differential flux balance analysis of quantitative proteomic data on protein interaction networks. GlobalSIP 2015: 977-981
2000 – 2009
- 2008
- [j25]Shoba Ranganathan, Michael Gribskov, Tin Wee Tan:
Bioinformatics research in the Asia Pacific: a 2007 update. BMC Bioinform. 9(S-1) (2008) - [c3]Kejie Li, Reazur Rahman, Aditi Gupta, Prasad Siddavatam, Michael Gribskov:
Pattern Matching in RNA Structures. ISBRA 2008: 317-330 - 2006
- [j24]Shoba Ranganathan, Martti Tammi, Michael Gribskov, Tin Wee Tan:
Establishing bioinformatics research in the Asia Pacific. BMC Bioinform. 7(S-5) (2006) - [j23]Jenny Gu, Michael Gribskov, Philip E. Bourne:
Wiggle - Predicting Functionally Flexible Regions from Primary Sequence. PLoS Comput. Biol. 2(7) (2006) - 2005
- [j22]Michael Gribskov:
An Open Forum for Computational Biology. PLoS Comput. Biol. 1(1) (2005) - [j21]Michael Gribskov:
The ISCB: Growing and Evolving in Step with Science. PLoS Comput. Biol. 1(5) (2005) - 2004
- [c2]Christina L. Zheng, T. Murlidharan Nair, Michael Gribskov, Y. S. Kwon, Hai-Ri Li, Xiang-Dong Fu:
A Database Designed to Computationally Aid an Experimental Approach to Alternative Splicing. Pacific Symposium on Biocomputing 2004: 78-88 - 2003
- [j20]J. Lynn Fink, Scott Drewes, Hiren Patel, John B. Welsh, Daniel R. Masys, Jacques Corbeil, Michael Gribskov:
2HAPI: A Microarray Data Analysis System. Bioinform. 19(11): 1443-1445 (2003) - [j19]Christina L. Zheng, Fariba Fana, Poornaprajna V. Udupi, Michael Gribskov:
a program for automatic generation of database interfaces . Comput. Biol. Chem. 27(2): 135-139 (2003) - [j18]T. Murlidharan Nair, Christina L. Zheng, J. Lynn Fink, Robert O. Stuart, Michael Gribskov:
Rival penalized competitive learning (RPCL): a topology-determining algorithm for analyzing gene expression data. Comput. Biol. Chem. 27(6): 565-574 (2003) - [j17]Timothy L. Bailey, Michael Gribskov:
Estimating and Evaluating the Statistics of Gapped Local-Alignment Scores. J. Comput. Biol. 9(3): 575-593 (2003) - [j16]Jason H. Tchieu, Fariba Fana, J. Lynn Fink, Jeffrey Harper, T. Murlidharan Nair, R. Hannes Niedner, Douglas W. Smith, Kenneth Steube, Tobey M. Tam, Stella Veretnik, Degeng Wang, Michael Gribskov:
The PlantsP and PlantsT Functional Genomics Databases. Nucleic Acids Res. 31(1): 342-344 (2003) - [j15]Michael Gribskov:
Challenges in Data Management for Functional Genomics. OMICS 7(1): 3-6 (2003) - 2002
- [j14]Samson Chien, Lawrence T. Reiter, Ethan Bier, Michael Gribskov:
Homophila: human disease gene cognates in Drosophila. Nucleic Acids Res. 30(1): 149-151 (2002) - 2001
- [j13]Daniel R. Masys, John B. Welsh, J. Lynn Fink, Michael Gribskov, Igor Klacansky, Jacques Corbeil:
Use of keyword hierarchies to interpret gene expression patterns. Bioinform. 17(4): 319-326 (2001) - [j12]Michael Gribskov, Fariba Fana, Jeffrey Harper, Debra A. Hope, Alice C. Harmon, Douglas W. Smith, Frans E. Tax, Guangfa Zhang:
PlantsP: a functional genomics database for plant phosphorylation. Nucleic Acids Res. 29(1): 111-113 (2001) - 2000
- [j11]Timothy L. Bailey, Michael Gribskov:
Concerning the accuracy of MAST E-values. Bioinform. 16(5): 488-489 (2000) - [j10]Philip E. Bourne, Michael Gribskov:
ISMB-2000: Bioinformatics enters a new millennium. Bioinform. 16(9): 749 (2000) - [e1]Philip E. Bourne, Michael Gribskov, Russ B. Altman, Nancy Jensen, Debra A. Hope, Thomas Lengauer, Julie C. Mitchell, Eric D. Scheeff, Chris Smith, Shawn Strande, Helge Weissig:
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, August 19-23, 2000, La Jolla / San Diego, CA, USA. AAAI 2000, ISBN 1-57735-115-0 [contents]
1990 – 1999
- 1998
- [j9]Timothy L. Bailey, Michael Gribskov:
Combining evidence using p-values: application to sequence homology searches. Bioinform. 14(1): 48-54 (1998) - [j8]Timothy L. Bailey, Michael Gribskov:
Methods and Statistics for Combining Motif Match Scores. J. Comput. Biol. 5(2): 211-221 (1998) - 1997
- [j7]Timothy L. Bailey, Michael Gribskov:
Score Distributions for Simultaneous Matching to Multiple Motifs. J. Comput. Biol. 4(1): 45-59 (1997) - 1996
- [j6]Michael Gribskov, Nina L. Robinson:
Use of Receiver Operating Characteristic (ROC) Analysis to Evaluate Sequence Matching. Comput. Chem. 20(1): 25-33 (1996) - [c1]Timothy L. Bailey, Michael Gribskov:
The Megaprior Heuristic for Discovering Protein Sequence Patterns. ISMB 1996: 15-24 - 1993
- [j5]Michael Gribskov:
A Mechanistic View of Proteins and Their Sequences. Comput. Chem. 17(2): 113-116 (1993) - 1992
- [j4]Michael Gribskov:
The Language Metaphor in Sequence Analysis. Comput. Chem. 16(2): 85-88 (1992)
1980 – 1989
- 1988
- [j3]Michael Gribskov, M. Homyak, J. Edenfield, David S. Eisenberg:
Profile scanning for three-dimensional structural patterns in protein sequences. Comput. Appl. Biosci. 4(1): 61-66 (1988) - 1986
- [j2]Michael Gribskov, Richard R. Burgess, J. Devereux:
PEPPLOT, a protein secondary structure analysis program for the UWGCG sequence analysis software package. Nucleic Acids Res. 14(1): 327-334 (1986) - 1984
- [j1]Michael Gribskov, J. Devereux, Richard R. Burgess:
The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression. Nucleic Acids Res. 12(1): 539-549 (1984)
Coauthor Index
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