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2020 – today
- 2024
[j13]Lillian Muyama
, Antoine Neuraz, Adrien Coulet:
Deep Reinforcement Learning for personalized diagnostic decision pathways using Electronic Health Records: A comparative study on anemia and Systemic Lupus Erythematosus. Artif. Intell. Medicine 157: 102994 (2024)- [c31]Thibault Hubert, Ghislain Vaillant, Olivier Birot, Camila Arias, Antoine Neuraz, Adrien Coulet:
Comparing NER Approaches on French Clinical Text, with Easy-to-Reuse Pipelines. MIE 2024: 272-276 - [i12]Lillian Muyama, Antoine Neuraz, Adrien Coulet:
Deep Reinforcement Learning for Personalized Diagnostic Decision Pathways Using Electronic Health Records: A Comparative Study on Anemia and Systemic Lupus Erythematosus. CoRR abs/2404.05913 (2024) - [i11]Antoine Neuraz, Ghislain Vaillant, Camila Arias, Olivier Birot, Kim Tâm Huynh, Thibaut Fabacher, Alice Rogier, Nicolas Garcelon, Ivan Lerner, Bastien Rance, Adrien Coulet:
Facilitating phenotyping from clinical texts: the medkit library. CoRR abs/2409.00164 (2024) - [i10]Elisa Castagnari, Lillian Muyama, Adrien Coulet:
Prompting Large Language Models for Supporting the Differential Diagnosis of Anemia. CoRR abs/2409.15377 (2024) - 2023
- [c30]Antoine Neuraz, Ivan Lerner, Olivier Birot, Camila Arias, Larry Han, Clara-Lea Bonzel, Tianxi Cai, Kim Tâm Huynh, Adrien Coulet:
TAXN: Translate Align Extract Normalize, a Multilingual Extraction Tool for Clinical Texts. MedInfo 2023: 649-653 - [c29]Thibaut Fabacher, Erik-André Sauleau, Noémie Leclerc Du Sablon, Hugo Bergier, Jacques-Eric Gottenberg, Adrien Coulet, Aurélie Névéol:
Evaluating the Portability of Rheumatoid Arthritis Phenotyping Algorithms: A Case Study on French EHRs. MIE 2023: 768-772 - [c28]Mina Abd Nikooie Pour, Alsayed Algergawy, Patrice Buche, Leyla Jael Castro, Jiaoyan Chen, Adrien Coulet, Julien Cufi, Hang Dong, Omaima Fallatah, Daniel Faria, Irini Fundulaki, Sven Hertling, Yuan He, Ian Horrocks, Martin Huschka, Liliana Ibanescu, Sarika Jain, Ernesto Jiménez-Ruiz, Naouel Karam, Patrick Lambrix, Huanyu Li, Ying Li, Pierre Monnin, Engy Nasr, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Guilherme Sousa, Cássia Trojahn, Jana Vatascinová, Mingfang Wu, Beyza Yaman, Ondrej Zamazal, Lu Zhou:
Results of the Ontology Alignment Evaluation Initiative 2023. OM@ISWC 2023: 97-139 - [i9]Lillian Muyama, Antoine Neuraz, Adrien Coulet:
Extracting Diagnosis Pathways from Electronic Health Records Using Deep Reinforcement Learning. CoRR abs/2305.06295 (2023) - 2022
- [j12]Pierre Monnin, Chedy Raïssi, Amedeo Napoli, Adrien Coulet:
Discovering alignment relations with Graph Convolutional Networks: A biomedical case study. Semantic Web 13(3): 379-398 (2022) - [c27]Safa Alsaidi, Miguel Couceiro, Esteban Marquer, Sophie Quennelle, Anita Burgun, Nicolas Garcelon, Adrien Coulet:
An analogy based framework for patient-stay identification in healthcare. ICCBR Workshops 2022: 68-80 - [c26]Safa Alsaidi, Miguel Couceiro, Sophie Quennelle, Anita Burgun, Nicolas Garcelon, Adrien Coulet:
Exploring Analogical Inference in Healthcare. IARML@IJCAI 2022: 40-50 - [c25]Pierre Monnin, Adrien Coulet:
Matching pharmacogenomic knowledge: particularities, results, and perspectives. OM@ISWC 2022: 79-83 - 2021
- [j11]Joël Legrand, Yannick Toussaint, Chedy Raïssi, Adrien Coulet:
Syntax-based transfer learning for the task of biomedical relation extraction. J. Biomed. Semant. 12(1): 16 (2021) - [j10]Emmanuel Bresso, Pierre Monnin, Cédric Bousquet, François-Élie Calvier, Ndeye Coumba Ndiaye, Nadine Petitpain, Malika Smaïl-Tabbone, Adrien Coulet:
Investigating ADR mechanisms with Explainable AI: a feasibility study with knowledge graph mining. BMC Medical Informatics Decis. Mak. 21(1): 171 (2021) - [c24]Walid Hafiane, Joël Legrand, Yannick Toussaint, Adrien Coulet:
Expérimentations autour des architectures d'apprentissage par transfert pour l'extraction de relations biomédicales. EGC 2021: 95-106 - [c23]Alice Rogier, Adrien Coulet, Bastien Rance:
Using an Ontological Representation of Chemotherapy Toxicities for Guiding Information Extraction and Integration from EHRs. MedInfo 2021: 91-95 - 2020
- [c22]Pierre Monnin, Emmanuel Bresso, Miguel Couceiro, Malika Smaïl-Tabbone, Amedeo Napoli, Adrien Coulet:
Tackling scalability issues in mining path patterns from knowledge graphs: a preliminary study. ALGOS 2020: 123-137 - [c21]Pierre Monnin, Miguel Couceiro, Amedeo Napoli, Adrien Coulet:
Knowledge-Based Matching of n-ary Tuples. ICCS 2020: 48-56 - [i8]Pierre Monnin, Miguel Couceiro, Amedeo Napoli, Adrien Coulet:
Knowledge Reconciliation of n-ary Relations. CoRR abs/2002.08103 (2020) - [i7]Pierre Monnin, Emmanuel Bresso, Miguel Couceiro, Malika Smaïl-Tabbone, Amedeo Napoli, Adrien Coulet:
Tackling scalability issues in mining path patterns from knowledge graphs: a preliminary study. CoRR abs/2007.08821 (2020) - [i6]Pierre Monnin, Chedy Raïssi, Amedeo Napoli, Adrien Coulet:
Rediscovering alignment relations with Graph Convolutional Networks. CoRR abs/2011.06023 (2020) - [i5]Walid Hafiane, Joël Legrand, Yannick Toussaint, Adrien Coulet:
Experiments on transfer learning architectures for biomedical relation extraction. CoRR abs/2011.12380 (2020) - [i4]Emmanuel Bresso, Pierre Monnin, Cédric Bousquet, François-Élie Calvier, Ndeye Coumba Ndiaye, Nadine Petitpain, Malika Smaïl-Tabbone, Adrien Coulet:
Investigating ADR mechanisms with knowledge graph mining and explainable AI. CoRR abs/2012.09077 (2020)
2010 – 2019
- 2019
- [b2]Adrien Coulet:
Mises en correspondances de données, textes et connaissances pour la découverte de connaissances biomédicales. (Mappings between data, texts and knowledge for biomedical knowledge discovery). University of Lorraine, Nancy, France, 2019 - [j9]Pierre Monnin, Joël Legrand, Graziella Husson, Patrice Ringot, Andon Tchechmedjiev, Clément Jonquet, Amedeo Napoli, Adrien Coulet:
PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison. BMC Bioinform. 20-S(4): 139:1-139:16 (2019) - [c20]Stephen Pfohl, Ben J. Marafino, Adrien Coulet, Fátima Rodriguez, Latha Palaniappan, Nigam H. Shah:
Creating Fair Models of Atherosclerotic Cardiovascular Disease Risk. AIES 2019: 271-278 - [c19]Pierre Monnin, Chedy Raïssi, Amedeo Napoli, Adrien Coulet:
Knowledge Reconciliation with Graph Convolutional Networks: Preliminary Results. DL4KG@ESWC 2019: 47-56 - 2018
- [c18]Joël Legrand, Yannick Toussaint, Chedy Raïssi, Adrien Coulet:
Syntax-based Transfer Learning for the Task of Biomedical Relation Extraction. Louhi@EMNLP 2018: 149-159 - [c17]Pierre Monnin, Amedeo Napoli, Adrien Coulet:
Combining Concept Annotation and Pattern Structures for Guiding Ontology Mapping. FCA4AI@IJCAI 2018: 117-126 - [c16]Gabin Personeni, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Philippe Jonveaux, Céline Bonnet, Adrien Coulet:
Cooperation of bio-ontologies for the classification of genetic intellectual disabilities : a diseasome approach. SWAT4LS 2018 - [i3]Stephen Pfohl, Ben J. Marafino, Adrien Coulet, Fátima Rodriguez, Latha Palaniappan, Nigam H. Shah:
Creating Fair Models of Atherosclerotic Cardiovascular Disease Risk. CoRR abs/1809.04663 (2018) - 2017
- [j8]Kevin Dalleau, Yassine Marzougui, Sébastien Da Silva, Patrice Ringot, Ndeye Coumba Ndiaye, Adrien Coulet:
Learning from biomedical linked data to suggest valid pharmacogenes. J. Biomed. Semant. 8(1): 16:1-16:12 (2017) - [j7]Gabin Personeni, Emmanuel Bresso, Marie-Dominique Devignes, Michel Dumontier, Malika Smaïl-Tabbone, Adrien Coulet:
Discovering associations between adverse drug events using pattern structures and ontologies. J. Biomed. Semant. 8(1): 29:1-29:13 (2017) - [c15]Pierre Monnin, Mario Lezoche, Amedeo Napoli, Adrien Coulet:
Using Formal Concept Analysis for Checking the Structure of an Ontology in LOD: The Example of DBpedia. ISMIS 2017: 674-683 - [i2]Pierre Monnin, Clément Jonquet, Joël Legrand, Amedeo Napoli, Adrien Coulet:
PGxO: A very lite ontology to reconcile pharmacogenomic knowledge units. PeerJ Prepr. 5: e3140 (2017) - 2016
- [i1]Adrien Coulet, Malika Smaïl-Tabbone:
Mining Electronic Health Records to Validate Knowledge in Pharmacogenomics. ERCIM News 2016(104) (2016) - 2015
- [c14]Mohsen Hassan, Olfa Makkaoui, Adrien Coulet, Yannick Toussaint:
Extracting Disease-Symptom Relationships by Learning Syntactic Patterns from Dependency Graphs. BioNLP@IJCNLP 2015: 71-80 - [c13]Kevin Dalleau, Ndeye Coumba Ndiaye, Adrien Coulet:
Suggesting Valid Pharmacogenes by Mining Linked Data. SWAT4LS 2015: 49-58 - 2014
- [c12]Gabin Personeni, Simon Daget, Céline Bonnet, Philippe Jonveaux, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Adrien Coulet:
Mining Linked Open Data: A Case Study with Genes Responsible for Intellectual Disability. DILS 2014: 16-31 - [c11]Mohsen Hassan, Adrien Coulet, Yannick Toussaint:
Learning Subgraph Patterns from text for Extracting Disease - Symptom Relationships. DMNLP@PKDD/ECML 2014: 81-96 - 2013
- [c10]Mehwish Alam, Melisachew Wudage Chekol, Adrien Coulet, Amedeo Napoli, Malika Smaïl-Tabbone:
Lattice Based Data Access (LBDA): An Approach for Organizing and Accessing Linked Open Data in Biology. DMoLD 2013 - [c9]Adrien Coulet, Florent Domenach, Mehdi Kaytoue, Amedeo Napoli:
Using Pattern Structures for Analyzing Ontology-Based Annotations of Biomedical Data. ICFCA 2013: 76-91 - 2012
- [j6]Yi Liu, Adrien Coulet, Paea LePendu, Nigam H. Shah:
Using ontology-based annotation to profile disease research. J. Am. Medical Informatics Assoc. 19(e1) (2012) - [j5]Adrien Coulet, K. Bretonnel Cohen, Russ B. Altman:
The state of the art in text mining and natural language processing for pharmacogenomics. J. Biomed. Informatics 45(5): 825-826 (2012) - [c8]Mehwish Alam, Adrien Coulet, Amedeo Napoli, Malika Smaïl-Tabbone:
Formal Concept Analysis Applied to Transcriptomic Data. CLA 2012: 339-344 - [c7]Mehwish Alam, Adrien Coulet, Amedeo Napoli, Malika Smaïl-Tabbone:
Formal Concept Analysis Applied to Transcriptomic Data. FCA4AI@ECAI 2012: 7-14 - 2011
- [j4]Adrien Coulet, Yael Garten, Michel Dumontier, Russ B. Altman, Mark A. Musen, Nigam H. Shah:
Integration and publication of heterogeneous text-mined relationships on the Semantic Web. J. Biomed. Semant. 2(S-2): S10 (2011) - [j3]Clément Jonquet, Paea LePendu, Sean M. Falconer, Adrien Coulet, Natalya Fridman Noy, Mark A. Musen, Nigam H. Shah:
NCBO Resource Index: Ontology-based search and mining of biomedical resources. J. Web Semant. 9(3): 316-324 (2011) - 2010
- [j2]Adrien Coulet, Nigam H. Shah, Yael Garten, Mark A. Musen, Russ B. Altman:
Using text to build semantic networks for pharmacogenomics. J. Biomed. Informatics 43(6): 1009-1019 (2010) - [c6]Clément Jonquet, Adrien Coulet, Nigam H. Shah, Mark A. Musen:
Indexation et intégration de ressources textuelles à l'aide d'ontologies : application au domaine biomédical. IC 2010: 271-282 - [c5]Adrien Coulet, Nigam H. Shah, Lawrence Hunter, Chitta Baral, Russ B. Altman:
Extraction of Genotype-Phenotype-Drug Relationships from Text: From Entity Recognition to Bioinformatics Application. Pacific Symposium on Biocomputing 2010: 485-487
2000 – 2009
- 2008
- [b1]Adrien Coulet:
Construction et utilisation d'une base de connaissances pharmacogénomique pour l'intégration de données et la découverte de connaissances. (Construction and use of a pharmacogenomic knowledge base for data integration and knowledge discovery). Henri Poincaré University, Nancy, France, 2008 - [j1]Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes:
Ontology-guided data preparation for discovering genotype-phenotype relationships. BMC Bioinform. 9(S-4) (2008) - [c4]Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes:
Ontology Refinement through Role Assertion Analysis: Example in Pharmacogenomics. Description Logics 2008 - [c3]Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes:
Role Assertion Analysis: a proposed method for ontology refinement through assertion learning. STAIRS 2008: 47-58 - 2006
- [c2]Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes:
SNP-Converter: An Ontology-Based Solution to Reconcile Heterogeneous SNP Descriptions for Pharmacogenomic Studies. DILS 2006: 82-93 - [c1]Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes:
Suggested Ontology for Pharmacogenomics (SO-Pharm): Modular Construction and Preliminary Testing. OTM Workshops (1) 2006: 648-657
Coauthor Index
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