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ORCIDSorin Draghici
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2020 – today
- 2021
[j44]Sorin Draghici
, Tuan-Minh Nguyen, Larry A. Sonna, Cordelia Ziraldo, Radu Vanciu, Raef Fadel, Austin Morrison, Rachel M. Kenney, George Alangaden, Mayur Ramesh, Gil Mor:
COVID-19: disease pathways and gene expression changes predict methylprednisolone can improve outcome in severe cases. Bioinform. 37(17): 2691-2698 (2021)- [j43]Hung Nguyen, Duc Tran, Jonathan M. Galazka, Sylvain V. Costes, Afshin Beheshti, Juli Petereit, Sorin Draghici, Tin Nguyen:
CPA: a web-based platform for consensus pathway analysis and interactive visualization. Nucleic Acids Res. 49(Webserver-Issue): 114-124 (2021) - 2020
- [j42]Adib Shafi, Tin Nguyen, Azam Peyvandi-Pour, Sorin Draghici:
GSMA: an approach to identify robust global and test Gene Signatures using Meta-Analysis. Bioinform. 36(2): 487-495 (2020) - [c27]Suzan Arslanturk, Sorin Draghici, Tin Nguyen:
Integrated Cancer Subtyping using Heterogeneous Genome-Scale Molecular Datasets. PSB 2020: 551-562
2010 – 2019
- 2019
- [j41]Hung Nguyen, Sangam Shrestha, Sorin Draghici, Tin Nguyen:
PINSPlus: a tool for tumor subtype discovery in integrated genomic data. Bioinform. 35(16): 2843-2846 (2019) - [j40]Nafiseh Saberian, Azam Peyvandi-Pour, Michele Donato, Sahar Ansari, Sorin Draghici:
A new computational drug repurposing method using established disease-drug pair knowledge. Bioinform. 35(19): 3672-3678 (2019) - 2018
- [j39]Adib Shafi, Cristina Mitrea, Tin Chi Nguyen, Sorin Draghici:
A survey of the approaches for identifying differential methylation using bisulfite sequencing data. Briefings Bioinform. 19(5): 737-753 (2018) - [j38]Cristina Mitrea, Priyanga Wijesinghe, Gregory Dyson, Adéle Kruger, Douglas M. Ruden, Sorin Draghici, Aliccia Bollig-Fischer:
Integrating 5hmC and gene expression data to infer regulatory mechanisms. Bioinform. 34(9): 1441-1447 (2018) - [j37]Azam Peyvandi-Pour, Nafiseh Saberian, Adib Shafi, Michele Donato, Sorin Draghici:
A novel computational approach for drug repurposing using systems biology. Bioinform. 34(16): 2817-2825 (2018) - [c26]Suzan Arslanturk, Sorin Draghici:
Disease Subtyping using Somatic Variant Data. BCB 2018: 277-282 - 2017
- [j36]Sahar Ansari, Michele Donato, Nafiseh Saberian, Sorin Draghici:
An approach to infer putative disease-specific mechanisms using neighboring gene networks. Bioinform. 33(13): 1987-1994 (2017) - [j35]Sahar Ansari, Calin Voichita, Michele Donato, Rebecca Tagett, Sorin Draghici:
A Novel Pathway Analysis Approach Based on the Unexplained Disregulation of Genes. Proc. IEEE 105(3): 482-495 (2017) - [j34]Tin Chi Nguyen, Cristina Mitrea, Rebecca Tagett, Sorin Draghici:
DANUBE: Data-Driven Meta-ANalysis Using UnBiased Empirical Distributions - Applied to Biological Pathway Analysis. Proc. IEEE 105(3): 496-515 (2017) - [c25]Diana Diaz, Michele Donato, Tin Nguyen, Sorin Draghici:
MicroRNA-Augmented Pathways (mirAP) and Their Applications to Pathway Analysis and Disease Subtyping. PSB 2017: 390-401 - 2016
- [j33]Tin Chi Nguyen, Rebecca Tagett, Michele Donato, Cristina Mitrea, Sorin Draghici:
A novel bi-level meta-analysis approach: applied to biological pathway analysis. Bioinform. 32(3): 409-416 (2016) - [c24]Tin Chi Nguyen, Diana Diaz, Sorin Draghici:
TOMAS: A novel TOpology-aware Meta-Analysis approach applied to System biology. BCB 2016: 13-22 - [c23]Diana Diaz, Tin Chi Nguyen, Sorin Draghici:
A Systems Biology Approach for Unsupervised Clustering of High-Dimensional Data. MOD 2016: 193-203 - 2015
- [c22]Adib Shafi, Michele Donato, Sorin Draghici:
A systems biology approach for the identification of significantly perturbed genes. BCB 2015: 423-432 - 2014
- [j32]Jim Cavalcoli, Lonnie R. Welch, Bruce J. Aronow, Sorin Draghici, Daisuke Kihara:
The International Society of Computational Biology presents: the Great Lakes Bioinformatics Conference, May 16-18, 2014, Cincinnati, Ohio. Bioinform. 30(1): 148-149 (2014) - [j31]Aliccia Bollig-Fischer, Luca Marchetti, Cristina Mitrea, Jiusheng Wu, Adéle Kruger, Vincenzo Manca, Sorin Draghici:
Modeling time-dependent transcription effects of HER2 oncogene and discovery of a role for E2F2 in breast cancer cell-matrix adhesion. Bioinform. 30(21): 3036-3043 (2014) - 2013
- [j30]Zeinab Taghavi, Narjes S. Movahedi, Sorin Draghici, Hamidreza Chitsaz:
Distilled single-cell genome sequencing and de novo assembly for sparse microbial communities. Bioinform. 29(19): 2395-2401 (2013) - [j29]Maria Rosaria Del Sorbo, Walter Balzano, Michele Donato, Sorin Draghici:
Assessing co-regulation of directly linked genes in biological networks using microarray time series analysis. Biosyst. 114(2): 149-154 (2013) - [j28]Zhonghui Xu, Calin Voichita, Sorin Draghici, Roberto Romero:
Z-Bag: a Classification Ensemble System with posterior Probabilistic outputs. Comput. Intell. 29(2): 310-330 (2013) - [c21]Calin Voichita, Michele Donato, Sorin Draghici:
A genetic algorithms framework for estimating individual gene contributions in signaling pathways. IEEE Congress on Evolutionary Computation 2013: 650-657 - [i1]Zeinab Taghavi, Narjes S. Movahedi, Sorin Draghici, Hamidreza Chitsaz:
Distilled Single Cell Genome Sequencing and De Novo Assembly for Sparse Microbial Communities. CoRR abs/1305.0062 (2013) - 2012
- [j27]Adi L. Tarca, Sorin Draghici, Gaurav Bhatti, Roberto Romero:
Down-weighting overlapping genes improves gene set analysis. BMC Bioinform. 13: 136 (2012) - [j26]Nadeem Ansari, Riyue Bao, Calin Voichita, Sorin Draghici:
Detecting Phenotype-Specific Interactions between Biological Processes from Microarray Data and Annotations. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1399-1409 (2012) - [c20]Zeinab Tagliavi, Sorin Draghici:
MDAsim: A multiple displacement amplification simulator. BIBM 2012: 1-4 - [c19]Calin Voichita, Michele Donato, Sorin Draghici:
Incorporating Gene Significance in the Impact Analysis of Signaling Pathways. ICMLA (1) 2012: 126-131 - [c18]Michele Donato, Sorin Draghici, Alin Tomoiaga, Peter Westfall, Zhonghui Xu, Roberto Romero:
A method for analysis and correction of cross-talk effects in pathway analysis. IJCNN 2012: 1-7 - 2011
- [j25]Luca Beltrame, Enrica Calura, Razvan R. Popovici, Lisa Rizzetto, Damariz Rivero Guedez, Michele Donato, Chiara Romualdi, Sorin Draghici, Duccio Cavalieri:
The Biological Connection Markup Language: a SBGN-compliant format for visualization, filtering and analysis of biological pathways. Bioinform. 27(15): 2127-2133 (2011) - 2010
- [j24]Bogdan Done, Purvesh Khatri, Arina Done, Sorin Draghici:
Predicting Novel Human Gene Ontology Annotations Using Semantic Analysis. IEEE ACM Trans. Comput. Biol. Bioinform. 7(1): 91-99 (2010) - [c17]Michele Donato, Sorin Draghici:
Signaling pathways coupling phenomena. IJCNN 2010: 1-6 - [e1]Sorin Draghici, Taghi M. Khoshgoftaar, Vasile Palade, Witold Pedrycz, M. Arif Wani, Xingquan Zhu:
The Ninth International Conference on Machine Learning and Applications, ICMLA 2010, Washington, DC, USA, 12-14 December 2010. IEEE Computer Society 2010, ISBN 978-0-7695-4300-0 [contents]
2000 – 2009
- 2009
- [j23]Adi L. Tarca, Sorin Draghici, Purvesh Khatri, Sonia S. Hassan, Pooja Mittal, Jung-Sun Kim, Chong Jai Kim, Juan Pedro Kusanovic, Roberto Romero:
A novel signaling pathway impact analysis. Bioinform. 25(1): 75-82 (2009) - 2008
- [j22]Sorin Draghici, Adi L. Tarca, Longfei Yu, Stephen Ethier, Roberto Romero:
KUTE-BASE: storing, downloading and exporting MIAME-compliant microarray experiments in minutes rather than hours. Bioinform. 24(5): 738-740 (2008) - [c16]Calin Voichita, Purvesh Khatri, Sorin Draghici:
Identifying uncertainty regions in Support Vector Machines using geometric margin and convex hulls. IJCNN 2008: 3319-3324 - 2007
- [j21]Purvesh Khatri, Calin Voichita, Khalid Kattan, Nadeem Ansari, Avani Khatri, Constantin Georgescu, Adi L. Tarca, Sorin Draghici:
Onto-Tools: new additions and improvements in 2006. Nucleic Acids Res. 35(Web-Server-Issue): 206-211 (2007) - [j20]Adi L. Tarca, Vincent J. Carey, Xue-wen Chen, Roberto Romero, Sorin Draghici:
Machine Learning and Its Applications to Biology. PLoS Comput. Biol. 3(6) (2007) - [c15]Purvesh Khatri, Sorin Draghici, Adi L. Tarca, Sonia S. Hassan, Roberto Romero:
A System Biology Approach for the Steady-State Analysis of Gene Signaling Networks. CIARP 2007: 32-41 - [c14]Bogdan Done, Purvesh Khatri, Arina Done, Sorin Draghici:
Semantic Analysis of Genome Annotations using Weighting Schemes. CIBCB 2007: 212-218 - 2006
- [j19]Sorin Draghici, Sivakumar Sellamuthu, Purvesh Khatri:
Babel's tower revisited: a universal resource for cross-referencing across annotation databases. Bioinform. 22(23): 2934-2939 (2006) - [j18]Purvesh Khatri, Valmik Desai, Adi L. Tarca, Sivakumar Sellamuthu, Derek E. Wildman, Roberto Romero, Sorin Draghici:
New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate. Nucleic Acids Res. 34(Web-Server-Issue): 626-631 (2006) - 2005
- [j17]Purvesh Khatri, Bogdan Done, Archana Rao, Arina Done, Sorin Draghici:
A semantic analysis of the annotations of the human genome. Bioinform. 21(16): 3416-3421 (2005) - [j16]Purvesh Khatri, Sorin Draghici:
Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinform. 21(18): 3587-3595 (2005) - [j15]Purvesh Khatri, Sivakumar Sellamuthu, Pooja Malhotra, Kashyap Amin, Arina Done, Sorin Draghici:
Recent additions and improvements to the Onto-Tools. Nucleic Acids Res. 33(Web-Server-Issue): 762-765 (2005) - [j14]Otto Muzik, Siamak Pourabdollah, Csaba Juhász, Diane C. Chugani, James Janisse, Sorin Draghici:
Application of an objective method for localizing bilateral cortical FDG PET abnormalities to guide the resection of epileptic foci. IEEE Trans. Biomed. Eng. 52(9): 1574-1581 (2005) - [c13]Valmik Desai, Purvesh Khatri, Arina Done, Aviva Friedman, Michael A. Tainsky, Sorin Draghici:
A Novel Bioinformatics Technique for Predicting Condition-specific Transcription Factor Binding Sites. CIBCB 2005: 202-207 - [c12]Sorin Draghici, Purvesh Khatri, Yanhong Liu, Kitty J. Chase, Elizabeth A. Bode, David A. Kulesh, Leonard P. Wasieloski, David A. Norwood, Jaques Reifman:
Identification of Genomic Signatures for the Design of Assays for the Detection and Monitoring of Anthrax Threats. Pacific Symposium on Biocomputing 2005 - 2004
- [j13]Bin Yao, Sanjay N. Rakhade, Qunfang Li, Sharlin Ahmed, Raul Krauss, Sorin Draghici, Jeffrey A. Loeb:
Accuracy of cDNA microarray methods to detect small gene expression changes induced by neuregulin on breast epithelial cells. BMC Bioinform. 5: 99 (2004) - [j12]Michael Johnson, Farshad Fotouhi, Sorin Draghici, Ming Dong, Duo Xu:
Discovering Document Semantics QBYS: A System for Querying the WWW by Semantics. Multim. Tools Appl. 24(2): 155-188 (2004) - [j11]Purvesh Khatri, Pratik Bhavsar, Gagandeep Bawa, Sorin Draghici:
Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments. Nucleic Acids Res. 32(Web-Server-Issue): 449-456 (2004) - 2003
- [j10]Sorin Draghici, R. Brian Potter:
Predicting HIV drug resistance with neural networks. Bioinform. 19(1): 98-107 (2003) - [j9]Sorin Draghici, Frank M. Graziano, Samira Y. Kettoola, Ishwar K. Sethi, George Towfic:
Mining HIV Dynamics Using Independent Component Analysis. Bioinform. 19(8): 981-986 (2003) - [j8]Sorin Draghici, Olga Kulaeva, Bruce Hoff, Anton Petrov, Soheil Shams, Michael A. Tainsky:
Noise Sampling Method: An ANOVA Approach Allowing Robust Selection of Differentially Regulated Genes Measured by DNA Microarrays. Bioinform. 19(11): 1348-1359 (2003) - [j7]Sorin Draghici, Purvesh Khatri, Pratik Bhavsar, Abhik Shah, Stephen A. Krawetz, Michael A. Tainsky:
Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate. Nucleic Acids Res. 31(13): 3775-3781 (2003) - [c11]Siamak Pourabdollah, Otto Muzik, Sorin Draghici:
A Back Propagation Neural Network for Localizing Abnormal Cortical Regions in FDG PET Images in Epileptic Children. IWANN (2) 2003: 623-630 - [c10]Sorin Draghici, Korkut Uygun, Xiaoju Wang, Mita Chatterjee, Michael A. Tainsky:
Cancer Prediction by Protein Microarray Profiling. Neural Networks and Computational Intelligence 2003: 136-141 - 2002
- [j6]David A. Sprecher, Sorin Draghici:
Space-filling curves and Kolmogorov superposition-based neural networks. Neural Networks 15(1): 57-67 (2002) - [j5]Sorin Draghici:
On the capabilities of neural networks using limited precision weights. Neural Networks 15(3): 395-414 (2002) - [c9]R. Brian Potter, Sorin Draghici:
A SOFM Approach to Predicting HIV Drug Resistance. Pacific Symposium on Biocomputing 2002: 77-87 - 2001
- [j4]Sorin Draghici:
The constraint based decomposition (CBD) training architecture. Neural Networks 14(4-5): 527-550 (2001) - 2000
- [j3]Sorin Draghici:
Neural Networks in Analog Hardware - Design and Implementation Issues. Int. J. Neural Syst. 10(1): 19-42 (2000) - [c8]Sorin Draghici, Lonnie T. Cumberland Jr., Ladislau C. Kovari:
Correlation of HIV protease structure with Indinavir resistance: a data mining and neural networks approach. Data Mining and Knowledge Discovery: Theory, Tools, and Technology 2000: 319-329
1990 – 1999
- 1999
- [j2]Valeriu Beiu, Sorin Draghici, Thierry de Pauw:
A Constructive Approach to Calculating Lower Entropy Bounds. Neural Process. Lett. 9(1): 1-12 (1999) - [c7]Sorin Draghici:
Some new results on the capabilities of integer weights neural networks in classification problems. IJCNN 1999: 519-524 - [c6]Sorin Draghici, Damon A. Miller:
A VLSI neural network classifier based on integer-valued weights. IJCNN 1999: 2419-2424 - [c5]Sorin Draghici:
On the Computational Power of Limited Precision Weights Neutral Networks in Classification Problems: How to Calculate the Weight Range so that a Solution Will Exist. IWANN (1) 1999: 401-412 - 1998
- [c4]Sorin Draghici:
On the Complexity of VLSI-Friendly Neural Networks for Classification Problems. Canadian AI 1998: 285-297 - 1997
- [j1]Sorin Draghici:
A Neural Network Based Artificial Vision System for Licence Plate Recognition. Int. J. Neural Syst. 8(1): 113-126 (1997) - [c3]Sorin Draghici, Ishwar K. Sethi:
On the Possibilities of the Limited Precision Weights Neural Networks in Classification Problems. IWANN 1997: 753-762 - [c2]Valeriu Beiu, Sorin Draghici, Hanna E. Makaruk:
On limited fan-in optimal neural networks. SBRN 1997: 19-30 - 1996
- [b1]Sorin Draghici:
Using constraints to improve generalisation and training of feedforward neural networks: constraint based decomposition and complex backpropagation. University of St Andrews, UK, 1996 - [c1]Sorin Draghici:
Some enhancements of the constraint based decomposition training architecture. ICNN 1996: 317-322
Coauthor Index
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