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2020 – today
- 2024
[j59]Eve Richardson
, Raphael Trevizani, Jason A. Greenbaum, Hannah Carter, Morten Nielsen, Bjoern Peters:
The receiver operating characteristic curve accurately assesses imbalanced datasets. Patterns 5(6): 100994 (2024)- 2023
- [j58]Jarjapu Mahita, Brendan Ha, Anais Gambiez, Sharon L. Schendel, Haoyang Li, Kathryn M. Hastie, S. Moses Dennison, Kan Li, Natalia Kuzmina, Sivakumar Periasamy, Alexander Bukreyev, Jennifer E. Munt, Mary Osei-Twum, Caroline Atyeo, James A. Overton, Randi Vita, Hector Guzman-Orozco, Marcus Mendes, Mari Kojima, Peter J. Halfmann, Yoshihiro Kawaoka, Galit Alter, Luc Gagnon, Ralph S. Baric, Georgia D. Tomaras, Tim Germann, Daniel Bedinger, Jason A. Greenbaum, Erica Ollmann Saphire, Bjoern Peters:
Coronavirus Immunotherapeutic Consortium Database. Database J. Biol. Databases Curation 2023 (2023) - [j57]Daniel Marrama, William D. Chronister, Luise Westernberg, Randi Vita, Zeynep Kosaloglu-Yalçin, Alessandro Sette, Morten Nielsen, Jason A. Greenbaum, Bjoern Peters:
PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins. BMC Bioinform. 24(1): 485 (2023) - [j56]Zeynep Kosaloglu-Yalçin, Nina Blazeska, Randi Vita, Hannah Carter, Morten Nielsen, Stephen Schoenberger, Alessandro Sette, Bjoern Peters:
The Cancer Epitope Database and Analysis Resource (CEDAR). Nucleic Acids Res. 51(D1): 845-852 (2023) - 2022
- [j55]Raphael Trevizani, Zhen Yan, Jason A. Greenbaum, Alessandro Sette, Morten Nielsen, Bjoern Peters:
A comprehensive analysis of the IEDB MHC class-I automated benchmark. Briefings Bioinform. 23(4) (2022) - [j54]Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall:
A Simple Standard for Sharing Ontological Mappings (SSSOM). Database J. Biol. Databases Curation 2022(2022) (2022) - [j53]Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland:
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies. Database J. Biol. Databases Curation 2022(2022) (2022) - [j52]Paul F. Zierep, Randi Vita, Nina Blazeska, Aurélien F. A. Moumbock, Jason A. Greenbaum, Bjoern Peters, Stefan Günther:
Towards the prediction of non-peptidic epitopes. PLoS Comput. Biol. 18(2) (2022) - [i2]Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland:
Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies. CoRR abs/2207.02056 (2022) - 2021
- [j51]Lindy Edwards, Rebecca C. Jackson, James A. Overton, Randi Vita, Nina Blazeska, Bjoern Peters, Alessandro Sette:
An immunologically friendly classification of non-peptidic ligands. Database J. Biol. Databases Curation 2021 (2021) - [j50]Rebecca C. Jackson, Nicolas Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg, Seth Carbon, Mélanie Courtot, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Nomi L. Harris, Melissa A. Haendel, Suzanna E. Lewis, Darren A. Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M. Schriml, Barry Smith, Christian J. Stoeckert Jr., Nicole A. Vasilevsky, Ramona L. Walls, Jie Zheng, Christopher J. Mungall, Bjoern Peters:
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. Database J. Biol. Databases Curation 2021 (2021) - [j49]Randi Vita, Jie Zheng, Rebecca C. Jackson, Damion M. Dooley, James A. Overton, Mark A. Miller, Daniel C. Berrios, Richard H. Scheuermann, Yongqun He, Hande Küçük-McGinty, Mathias Brochhausen, Aisyah Yu Lin, Sagar B. Jain, Marcus C. Chibucos, John Judkins, Michelle G. Giglio, Irene Y. Feng, Gully Burns, Matthew H. Brush, Bjoern Peters, Christian J. Stoeckert Jr.:
Standardization of assay representation in the Ontology for Biomedical Investigations. Database J. Biol. Databases Curation 2021 (2021) - [j48]Jason Bennett, Mikhail Pomaznoy, Akul Singhania, Bjoern Peters:
A metric for evaluating biological information in gene sets and its application to identify co-expressed gene clusters in PBMC. PLoS Comput. Biol. 17(10) (2021) - [i1]Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall:
A Simple Standard for Sharing Ontological Mappings (SSSOM). CoRR abs/2112.07051 (2021) - 2020
- [j47]Randi Vita, James A. Overton, Patrick Dunn, Kei-Hoi Cheung, Steven H. Kleinstein, Alessandro Sette, Bjoern Peters:
A structured model for immune exposures. Database J. Biol. Databases Curation 2020 (2020) - [j46]Jan Andersson, Björn Peters:
The importance of reaction time, cognition, and meta-cognition abilities for drivers with visual deficits. Cogn. Technol. Work. 22(4): 787-800 (2020) - [j45]Scott Christley, Ademar Aguiar, George Blanck, Felix Breden, Syed Ahmad Chan Bukhari, Christian E. Busse, Jerome Jaglale, Srilakshmy L. Harikrishnan, Uri Laserson, Bjoern Peters, Artur Rocha, Chaim A. Schramm, Sarah Taylor, Jason A. Vander Heiden, Bojan Zimonja, Corey T. Watson, Brian Corrie, Lindsay G. Cowell:
The ADC API: A Web API for the Programmatic Query of the AIRR Data Commons. Frontiers Big Data 3: 22 (2020) - [j44]Birkir Reynisson, Bruno Alvarez, Sinu Paul, Bjoern Peters, Morten Nielsen:
NetMHCpan-4.1 and NetMHCIIpan-4.0: improved predictions of MHC antigen presentation by concurrent motif deconvolution and integration of MS MHC eluted ligand data. Nucleic Acids Res. 48(Webserver-Issue): W449-W454 (2020) - [j43]Sinu Paul, Nathan P. Croft, Anthony W. Purcell, David C. Tscharke, Alessandro Sette, Morten Nielsen, Bjoern Peters:
Benchmarking predictions of MHC class I restricted T cell epitopes in a comprehensively studied model system. PLoS Comput. Biol. 16(5) (2020)
2010 – 2019
- 2019
- [j42]Swapnil Mahajan, Zhen Yan, Martin Closter Jespersen, Kamilla Kjærgaard Jensen, Paolo Marcatili, Morten Nielsen, Alessandro Sette, Bjoern Peters:
Benchmark datasets of immune receptor-epitope structural complexes. BMC Bioinform. 20(1): 490:1-490:7 (2019) - [j41]James A. Overton, Randi Vita, Patrick Dunn, Julie G. Burel, Syed Ahmad Chan Bukhari, Kei-Hoi Cheung, Steven H. Kleinstein, Alexander D. Diehl, Bjoern Peters:
Reporting and connecting cell type names and gating definitions through ontologies. BMC Bioinform. 20-S(5): 259-264 (2019) - [j40]Randi Vita, Swapnil Mahajan, James A. Overton, Sandeep Kumar Dhanda, Sheridan Martini, Jason R. Cantrell, Daniel K. Wheeler, Alessandro Sette, Bjoern Peters:
The Immune Epitope Database (IEDB): 2018 update. Nucleic Acids Res. 47(Database-Issue): D339-D343 (2019) - [j39]Sandeep Kumar Dhanda, Swapnil Mahajan, Sinu Paul, Zhen Yan, Haeuk Kim, Martin Closter Jespersen, Vanessa Isabell Jurtz, Massimo Andreatta, Jason A. Greenbaum, Paolo Marcatili, Alessandro Sette, Morten Nielsen, Bjoern Peters:
IEDB-AR: immune epitope database - analysis resource in 2019. Nucleic Acids Res. 47(Webserver-Issue): W502-W506 (2019) - 2018
- [j38]Randi Vita, James A. Overton, Christopher J. Mungall, Alessandro Sette, Bjoern Peters:
FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability. Database J. Biol. Databases Curation 2018: bax105 (2018) - [j37]Randi Vita, James A. Overton, Bjoern Peters:
Identification of errors in the IEDB using ontologies. Database J. Biol. Databases Curation 2018: bay005 (2018) - [j36]Massimo Andreatta, Thomas Trolle, Zhen Yan, Jason A. Greenbaum, Bjoern Peters, Morten Nielsen:
An automated benchmarking platform for MHC class II binding prediction methods. Bioinform. 34(9): 1522-1528 (2018) - [j35]Sandeep Kumar Dhanda, Randi Vita, Brendan Ha, Alba Grifoni, Bjoern Peters, Alessandro Sette:
ImmunomeBrowser: a tool to aggregate and visualize complex and heterogeneous epitopes in reference proteins. Bioinform. 34(22): 3931-3933 (2018) - [j34]Mikhail Pomaznoy, Brendan Ha, Bjoern Peters:
GOnet: a tool for interactive Gene Ontology analysis. BMC Bioinform. 19(1): 470:1-470:8 (2018) - [j33]Wenguang Shao, Patrick G. A. Pedrioli, Witold Wolski, Christian Scurtescu, Emanuel Schmid, Juan Antonio Vizcaíno, Mathieu Courcelles, Heiko Schuster, Daniel Kowalewski, Fabio Marino, Cecilia S. Lindestam Arlehamn, Kerrie Vaughan, Bjoern Peters, Alessandro Sette, Tom H. M. Ottenhoff, Krista E. Meijgaarden, Natalie Nieuwenhuizen, Stefan H. E. Kaufmann, Ralph Schlapbach, John C. Castle, Alexey I. Nesvizhskii, Morten Nielsen, Eric W. Deutsch, David S. Campbell, Robert L. Moritz, Roman A. Zubarev, Anders Jimmy Ytterberg, Anthony W. Purcell, Miguel Marcilla, Alberto Paradela, Qi Wang, Catherine E. Costello, Nicola Ternette, Peter A. van Veelen, Cécile A. C. M. van Els, Albert J. R. Heck, Gustavo A. de Souza, Ludvig Magne Sollid, Arie Admon, Stefan Stevanovic, Hans-Georg Rammensee, Pierre Thibault, Claude Perreault, Michal Bassani-Sternberg, Ruedi Aebersold, Etienne Caron:
The SysteMHC Atlas project. Nucleic Acids Res. 46(Database-Issue): D1237-D1247 (2018) - [j32]Bjoern Peters, Steven E. Brenner, Edwin Wang, Donna K. Slonim, Maricel G. Kann:
Putting benchmarks in their rightful place: The heart of computational biology. PLoS Comput. Biol. 14(11) (2018) - [c10]Randi Vita, Bjoern Peters, James A. Overton, Kei-Hoi Cheung, Steven H. Kleinstein:
Formalizing the Representation of Immune Exposures for Human Immunology Studies. ICBO 2018 - 2017
- [j31]Randi Vita, James A. Overton, Alessandro Sette, Bjoern Peters:
Better living through ontologies at the Immune Epitope Database. Database J. Biol. Databases Curation 2017: bax014 (2017) - [j30]Martin Closter Jespersen, Bjoern Peters, Morten Nielsen, Paolo Marcatili:
BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes. Nucleic Acids Res. 45(Webserver-Issue): W24-W29 (2017) - [c9]Gully A. Burns, Randi Vita, James A. Overton, Ward Fleri, Bjoern Peters:
Semantic Modeling for Accelerated Immune Epitope Database (IEDB) Biocuration. K-CAP Workshops 2017: 7-12 - 2016
- [j29]Randi Vita, James A. Overton, Emily Seymour, John Sidney, Jim Kaufman, Rebecca L. Tallmadge, Shirley Ellis, John Hammond, Geoff W. Butcher, Alessandro Sette, Bjoern Peters:
An ontology for major histocompatibility restriction. J. Biomed. Semant. 7: 1 (2016) - 2015
- [j28]Inbal Sela-Culang, Shaul Ashkenazi, Bjoern Peters, Yanay Ofran:
PEASE: predicting B-cell epitopes utilizing antibody sequence. Bioinform. 31(8): 1313-1315 (2015) - [j27]Thomas Trolle, Imir G. Metushi, Jason A. Greenbaum, Yohan Kim, John Sidney, Ole Lund, Alessandro Sette, Bjoern Peters, Morten Nielsen:
Automated benchmarking of peptide-MHC class I binding predictions. Bioinform. 31(13): 2174-2181 (2015) - [j26]Randi Vita, James A. Overton, Jason A. Greenbaum, Julia V. Ponomarenko, Jason D. Clark, Jason R. Cantrell, Daniel K. Wheeler, Joseph L. Gabbard, Deborah Hix, Alessandro Sette, Bjoern Peters:
The immune epitope database (IEDB) 3.0. Nucleic Acids Res. 43(Database-Issue): 405-412 (2015) - 2014
- [j25]Sirarat Sarntivijai, Yu Lin, Zuoshuang Xiang, Terrence F. Meehan, Alexander D. Diehl, Uma D. Vempati, Stephan C. Schürer, Chao Pang, James Malone, Helen E. Parkinson, Yue Liu, Terue Takatsuki, Kaoru Saijo, Hiroshi Masuya, Yukio Nakamura, Matthew H. Brush, Melissa A. Haendel, Jie Zheng, Christian J. Stoeckert Jr., Bjoern Peters, Christopher J. Mungall, Thomas E. Carey, David J. States, Brian D. Athey, Yongqun He:
CLO: The cell line ontology. J. Biomed. Semant. 5: 37 (2014) - [j24]Yohan Kim, John Sidney, Søren Buus, Alessandro Sette, Morten Nielsen, Bjoern Peters:
Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions. BMC Bioinform. 15: 241 (2014) - [c8]Sinu Paul, John Sidney, Bjoern Peters, Alessandro Sette:
Development and validation of a broad scheme for prediction of HLA class II restricted T cell epitopes. BCB 2014: 733-738 - [c7]Anne Bresciani, Jason Greenbaum, Cecilia S. Lindestam Arlehamn, Alessandro Sette, Morten Nielsen, Bjoern Peters:
The interplay of sequence conservation and T cell immune recognition. BCB 2014: 739-743 - 2013
- [j23]Randi Vita, James A. Overton, Jason Greenbaum, Alessandro Sette, Björn Peters:
Query enhancement through the practical application of ontology: the IEDB and OBI. J. Biomed. Semant. 4(S-1): S6 (2013) - [j22]Yohan Kim, Jonathan W. Yewdell, Alessandro Sette, Björn Peters:
Positional Bias of MHC Class I Restricted T-Cell Epitopes in Viral Antigens Is Likely due to a Bias in Conservation. PLoS Comput. Biol. 9(1) (2013) - [j21]Jorg J. A. Calis, Matt Maybeno, Jason A. Greenbaum, Daniela Weiskopf, Aruna D. De Silva, Alessandro Sette, Can Kesmir, Björn Peters:
Properties of MHC Class I Presented Peptides That Enhance Immunogenicity. PLoS Comput. Biol. 9(10) (2013) - [c6]Matthew H. Brush, Jie Zheng, Yongqun He, Sirarat Sarntivijai, Bjoern Peters, Alexander D. Diehl, Christian J. Stoeckert Jr., Melissa A. Haendel:
Alignment of Cultured Cell Modeling Across OBO Foundry Ontologies: Key Outcomes, Insights. ICBO 2013: 120 - [c5]James A. Overton, Randi Vita, Jason Greenbaum, Heiko Dietze, Alessandro Sette, Bjoern Peters:
A Taxonomy for Immunologists. ICBO 2013: 124 - 2012
- [j20]Yohan Kim, Julia V. Ponomarenko, Zhanyang Zhu, Dorjee Tamang, Peng Wang, Jason Greenbaum, Claus Lundegaard, Alessandro Sette, Ole Lund, Philip E. Bourne, Morten Nielsen, Bjoern Peters:
Immune epitope database analysis resource. Nucleic Acids Res. 40(Web-Server-Issue): 525-530 (2012) - [j19]Vered Kunik, Bjoern Peters, Yanay Ofran:
Structural Consensus among Antibodies Defines the Antigen Binding Site. PLoS Comput. Biol. 8(2) (2012) - 2011
- [j18]Philippe Rocca-Serra, Alan Ruttenberg, Martin J. O'Connor, Patricia L. Whetzel, Daniel Schober, Jay Greenbaum, Mélanie Courtot, Ryan Remy Brinkman, Susanna-Assunta Sansone, Richard H. Scheuermann, Bjoern Peters:
Overcoming the ontology enrichment bottleneck with Quick Term Templates. Appl. Ontology 6(1): 13-22 (2011) - [j17]Emily Seymour, Rohini Damle, Alessandro Sette, Bjoern Peters:
Cost sensitive hierarchical document classification to triage PubMed abstracts for manual curation. BMC Bioinform. 12: 482 (2011) - [j16]Alexander D. Diehl, Alison Deckhut Augustine, Judith A. Blake, Lindsay G. Cowell, Elizabeth S. Gold, Timothy A. Gondré-Lewis, Anna Maria Masci, Terrence F. Meehan, Penelope A. Morel, Anastasia Nijnik, Bjoern Peters, Bali Pulendran, Richard H. Scheuermann, Q. Alison Yao, Martin S. Zand, Christopher J. Mungall:
Hematopoietic cell types: Prototype for a revised cell ontology. J. Biomed. Informatics 44(1): 75-79 (2011) - [j15]Julia V. Ponomarenko, Nikitas Papangelopoulos, Dirk M. Zajonc, Björn Peters, Alessandro Sette, Philip E. Bourne:
IEDB-3D: structural data within the immune epitope database. Nucleic Acids Res. 39(Database-Issue): 1164-1170 (2011) - [c4]Yohan Kim, Jonathan W. Yewdell, Bjoern Peters:
Determining positional bias of MHC class I restricted T-cell epitopes in viral antigens. BCB 2011: 607-611 - 2010
- [j14]Ryan Remy Brinkman, Mélanie Courtot, Dirk Derom, Jennifer Fostel, Yongqun He, Phillip W. Lord, James Malone, Helen E. Parkinson, Björn Peters, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Larisa N. Soldatova, Christian J. Stoeckert Jr., Jessica A. Turner, Jie Zheng, et al.:
Modeling biomedical experimental processes with OBI. J. Biomed. Semant. 1(S-1): S7 (2010) - [j13]Peng Wang, John Sidney, Yohan Kim, Alessandro Sette, Ole Lund, Morten Nielsen, Björn Peters:
Peptide binding predictions for HLA DR, DP and DQ molecules. BMC Bioinform. 11: 568 (2010) - [j12]Randi Vita, Laura Zarebski, Jason Greenbaum, Hussein Emami, Ilka Hoof, Nima Salimi, Rohini Damle, Alessandro Sette, Björn Peters:
The Immune Epitope Database 2.0. Nucleic Acids Res. 38(Database-Issue): 854-862 (2010) - [j11]Angelos Amditis, Luisa Andreone, Katia Pagle, Gustav Markkula, Enrica Deregibus, Maria Romera Rué, Francesco Bellotti, Andreas Engelsberg, Rino Brouwer, Björn Peters, Alessandro De Gloria:
Towards the Automotive HMI of the Future: Overview of the AIDE-Integrated Project Results. IEEE Trans. Intell. Transp. Syst. 11(3): 567-578 (2010) - [c3]Peng Wang, Björn Peters, John Sidney, Alessandro Sette:
An automatic computational pipeline to display MHC binding motifs. BCB 2010: 634-641
2000 – 2009
- 2009
- [j10]Yohan Kim, John Sidney, Clemencia Pinilla, Alessandro Sette, Björn Peters:
Derivation of an amino acid similarity matrix for peptide: MHC binding and its application as a Bayesian prior. BMC Bioinform. 10: 394 (2009) - 2008
- [j9]Julia V. Ponomarenko, Huynh-Hoa Bui, Wei Li, Nicholas Fusseder, Philip E. Bourne, Alessandro Sette, Björn Peters:
ElliPro: a new structure-based tool for the prediction of antibody epitopes. BMC Bioinform. 9 (2008) - [j8]Qing Zhang, Peng Wang, Yohan Kim, Pernille Haste-Andersen, John E. Beaver, Philip E. Bourne, Huynh-Hoa Bui, Søren Buus, Sune Frankild, Jason Greenbaum, Ole Lund, Claus Lundegaard, Morten Nielsen, Julia V. Ponomarenko, Alessandro Sette, Zhanyang Zhu, Björn Peters:
Immune epitope database analysis resource (IEDB-AR). Nucleic Acids Res. 36(Web-Server-Issue): 513-518 (2008) - [j7]Peng Wang, John Sidney, Courtney Dow, Bianca Mothé, Alessandro Sette, Björn Peters:
A Systematic Assessment of MHC Class II Peptide Binding Predictions and Evaluation of a Consensus Approach. PLoS Comput. Biol. 4(4) (2008) - [j6]Morten Nielsen, Claus Lundegaard, Thomas Blicher, Bjoern Peters, Alessandro Sette, Sune Justesen, Søren Buus, Ole Lund:
Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan. PLoS Comput. Biol. 4(7) (2008) - 2007
- [j5]Peng Wang, Alexander A. Morgan, Qing Zhang, Alessandro Sette, Björn Peters:
Automating document classification for the Immune Epitope Database. BMC Bioinform. 8 (2007) - [c2]Roman Rosipal, Björn Peters, Göran Kecklund, Torbjörn Åkerstedt, Georg Gruber, Michael Woertz, Peter Anderer, Georg Dorffner:
EEG-Based Drivers' Drowsiness Monitoring Using a Hierarchical Gaussian Mixture Model. HCI (16) 2007: 294-303 - 2006
- [j4]Randi Vita, Kerrie Vaughan, Laura Zarebski, Nima Salimi, Ward Fleri, Howard Grey, Muthu Sathiamurthy, John Mokili, Huynh-Hoa Bui, Philip E. Bourne, Julia V. Ponomarenko, Romulo de Castro Jr., Russell K. Chan, John Sidney, Stephen S. Wilson, Scott Stewart, Scott Way, Björn Peters, Alessandro Sette:
Curation of complex, context-dependent immunological data. BMC Bioinform. 7: 341 (2006) - [j3]Bjoern Peters, Huynh-Hoa Bui, Sune Frankild, Morten Nielsen, Claus Lundegaard, Emrah Kostem, Derek Basch, Kasper Lamberth, Mikkel Harndahl, Ward Fleri, Stephen S. Wilson, John Sidney, Ole Lund, Søren Buus, Alessandro Sette:
A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules. PLoS Comput. Biol. 2(6) (2006) - [c1]Alessandro Sette, Huynh-Hoa Bui, John Sidney, Philip E. Bourne, Søren Buus, Ward Fleri, R. Kubo, Ole Lund, D. Nemazee, Julia V. Ponomarenko, Muthu Sathiamurthy, Scott Stewart, Scott Way, Stephen S. Wilson, Björn Peters:
The Immune Epitope Database and Analysis Resource. PRIB 2006: 126-132 - 2005
- [j2]Björn Peters, Alessandro Sette:
Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method. BMC Bioinform. 6: 132 (2005) - 2003
- [j1]Björn Peters, Weiwei Tong, John Sidney, Alessandro Sette, Zhiping Weng:
Examining the independent binding assumption for binding of peptide epitopes to MHC-I molecules. Bioinform. 19(14): 1765-1772 (2003)
Coauthor Index
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