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ORCIDNicolas Palopoli
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2020 – today
- 2023
[j14]Ana Julia Velez Rueda, Franco Leonardo Bulgarelli, Nicolas Palopoli, Gustavo D. Parisi
:
CaviDB: a database of cavities and their features in the structural and conformational space of proteins. Database J. Biol. Databases Curation 2023 (2023)- 2022
- [j13]Martin Gonzalez Buitron, Ronaldo Romario Tunque Cahui, Emilio Garcia-Rios, Layla Hirsh, Gustavo D. Parisi, María Silvina Fornasari, Nicolas Palopoli:
CoDNaS-RNA: a database of conformational diversity in the native state of RNA. Bioinform. 38(6): 1745-1748 (2022) - [j12]Tadeo E. Saldaño, Nahuel Escobedo, Julia Marchetti, Diego Javier Zea, Juan Mac Donagh, Ana Julia Velez Rueda, Eduardo Gonik, Agustina García Melani, Julieta Novomisky Nechcoff, Martín N. Salas, Tomás Peters, Nicolás Demitroff, Sebastian Fernandez Alberti, Nicolas Palopoli, María Silvina Fornasari, Gustavo D. Parisi:
Impact of protein conformational diversity on AlphaFold predictions. Bioinform. 38(10): 2742-2748 (2022) - [j11]Nahuel Escobedo, Ronaldo Romario Tunque Cahui, Gastón Caruso, Emilio Garcia-Rios, Layla Hirsh, Alexander Miguel Monzon, Gustavo D. Parisi, Nicolas Palopoli:
CoDNaS-Q: a database of conformational diversity of the native state of proteins with quaternary structure. Bioinform. 38(21): 4959-4961 (2022) - [j10]Federica Quaglia, Bálint Mészáros, Edoardo Salladini, András Hatos, Rita Pancsa, Lucía B. Chemes, Mátyás Pajkos, Tamas Lazar, Samuel Peña-Díaz, Jaime Santos, Veronika Ács, Nazanin Farahi, Erzsébet Fichó, Maria Cristina Aspromonte, Claudio Bassot, Anastasia Chasapi, Norman E. Davey, Radoslav Davidovic, Laszlo Dobson, Arne Elofsson, Gábor Erdös, Pascale Gaudet, Michelle G. Giglio, Juliana Glavina, Javier Iserte, Valentín Iglesias, Zsófia L. Kálmán, Matteo Lambrughi, Emanuela Leonardi, Sonia Longhi, Sandra Macedo-Ribeiro, Emiliano Maiani, Julia Marchetti, Cristina Marino Buslje, Attila Meszaros, Alexander Miguel Monzon, Giovanni Minervini, Suvarna Nadendla, Juliet F. Nilsson, Marián Novotný, Christos A. Ouzounis, Nicolas Palopoli, Elena Papaleo, Pedro J. Barbosa Pereira, Gabriele Pozzati, Vasilis J. Promponas, Jordi Pujols, Alma Carolina Sanchez Rocha, Martin Salas, Luciana Rodriguez Sawicki, Éva Schád, Aditi Shenoy, Tamás Szaniszló, Konstantinos D. Tsirigos, Nevena Veljkovic, Gustavo D. Parisi, Salvador Ventura, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan:
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation. Nucleic Acids Res. 50(D1): 480-487 (2022) - 2020
- [j9]Nicolas Palopoli, Javier Iserte, Lucía B. Chemes, Cristina Marino Buslje, Gustavo D. Parisi, Toby J. Gibson, Norman E. Davey:
The articles.ELM resource: simplifying access to protein linear motif literature by annotation, text-mining and classification. Database J. Biol. Databases Curation 2020 (2020) - [j8]András Hatos, Borbála Hajdu-Soltész, Alexander Miguel Monzon, Nicolas Palopoli, Lucía Álvarez, Burcu Aykaç Fas, Claudio Bassot, Guillermo I. Benítez, Martina Bevilacqua, Anastasia Chasapi, Lucía B. Chemes, Norman E. Davey, Radoslav Davidovic, A. Keith Dunker, Arne Elofsson, Julien Gobeill, Nicolás S. González Foutel, Govindarajan Sudha, Mainak Guharoy, Tamás Horváth, Valentin Iglesias, Andrey V. Kajava, Orsolya P. Kovács, John Lamb, Matteo Lambrughi, Tamas Lazar, Jeremy Y. Leclercq, Emanuela Leonardi, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Emiliano Maiani, José A. Manso, Cristina Marino Buslje, Elizabeth Martínez-Pérez, Bálint Mészáros, Ivan Micetic, Giovanni Minervini, Nikoletta Murvai, Marco Necci, Christos A. Ouzounis, Mátyás Pajkos, Lisanna Paladin, Rita Pancsa, Elena Papaleo, Gustavo D. Parisi, Emilie Pasche, Pedro J. Barbosa Pereira, Vasilis J. Promponas, Jordi Pujols, Federica Quaglia, Patrick Ruch, Marco Salvatore, Éva Schád, Beáta Szabó, Tamás Szaniszló, Stella Tamana, Ágnes Tantos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan:
DisProt: intrinsic protein disorder annotation in 2020. Nucleic Acids Res. 48(Database-Issue): D269-D276 (2020) - [j7]Manjeet Kumar, Marc Gouw, Sushama Michael, Hugo Sámano-Sánchez, Rita Pancsa, Juliana Glavina, Athina Diakogianni, Jesús Alvarado Valverde, Dayana Bukirova, Jelena Calyseva, Nicolas Palopoli, Norman E. Davey, Lucía B. Chemes:
ELM - the eukaryotic linear motif resource in 2020. Nucleic Acids Res. 48(Database-Issue): D296-D306 (2020)
2010 – 2019
- 2019
- [j6]Ana Julia Velez Rueda, Nicolas Palopoli, Matías Zacarías, Leandro Matías Sommese, Gustavo D. Parisi:
ProtMiscuity: a database of promiscuous proteins. Database J. Biol. Databases Curation 2019: baz103 (2019) - [j5]Ana Julia Velez Rueda, Guillermo I. Benítez, Julia Marchetti, Marcia Anahi Hasenahuer, María Silvina Fornasari, Nicolas Palopoli, Gustavo D. Parisi:
Bioinformatics calls the school: Use of smartphones to introduce Python for bioinformatics in high schools. PLoS Comput. Biol. 15(2) (2019) - [r1]Nicolas Palopoli:
Assessment of Structure Quality (RNA and Protein). Encyclopedia of Bioinformatics and Computational Biology (3) 2019: 586-605 - 2018
- [j4]Marc Gouw, Sushama Michael, Hugo Sámano-Sánchez, Manjeet Kumar, András Zeke, Benjamin Lang, Benoit Bely, Lucía B. Chemes, Norman E. Davey, Ziqi Deng, Francesca Diella, Clara-Marie Gürth, Ann-Kathrin Huber, Stefan Kleinsorg, Lara S. Schlegel, Nicolas Palopoli, Kim Van Roey, Brigitte Altenberg, Attila Reményi, Holger Dinkel, Toby J. Gibson:
The eukaryotic linear motif resource - 2018 update. Nucleic Acids Res. 46(Database-Issue): D428-D434 (2018) - 2015
- [j3]Nicolas Palopoli, Kieren T. Lythgow, Richard J. Edwards:
QSLiMFinder: improved short linear motif prediction using specific query protein data. Bioinform. 31(14): 2284-2293 (2015) - [i1]Emily Olorin, Kevin T. O'Brien, Nicolas Palopoli, Åsa Pérez-Bercoff, Denis C. Shields, Richard J. Edwards:
SLiMScape 3.x: a Cytoscape 3 app for discovery of Short Linear Motifs in protein interaction networks. F1000Research 4: 477 (2015) - 2013
- [j2]Nicolas Palopoli, Esteban Lanzarotti, Gustavo D. Parisi:
BeEP Server: using evolutionary information for quality assessment of protein structure models. Nucleic Acids Res. 41(Webserver-Issue): 398-405 (2013) - 2012
- [j1]Dan M. Bolser, Pierre-Yves Chibon, Nicolas Palopoli, Sungsam Gong, Daniel Jacob, Victoria Dominguez Del Angel, Daniel Swan, Sebastian Bassi, Virginia González, Prashanth Suravajhala, Seungwoo Hwang, Paolo Romano, Rob Edwards, Bryan Bishop, John Eargle, Timur Shtatland, Nicholas J. Provart, Dave Clements, Daniel P. Renfro, Daeui Park, Jong Bhak:
MetaBase - the wiki-database of biological databases. Nucleic Acids Res. 40(Database-Issue): 1250-1254 (2012)
Coauthor Index
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