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2020 – today
- 2022
[i2]Hendrik F. R. Schmidt, Jörg Schlötterer, Marcel Bargull, Enrico Nasca, Ryan Aydelott, Christin Seifert, Folker Meyer:
Towards a trustworthy, secure and reliable enclave for machine learning in a hospital setting: The Essen Medical Computing Platform (EMCP). CoRR abs/2201.04816 (2022)- 2021
- [c18]Hendrik F. R. Schmidt, Jörg Schlötterer, Marcel Bargull, Enrico Nasca, Ryan Aydelott, Christin Seifert, Folker Meyer:
Towards a trustworthy, secure and reliable enclave for machine learning in a hospital setting: The Essen Medical Computing Platform (EMCP). CogMI 2021: 116-123
2010 – 2019
- 2019
- [j18]Somali Chaterji
, Jinkyu Koo, Ninghui Li, Folker Meyer, Ananth Grama, Saurabh Bagchi:
Federation in genomics pipelines: techniques and challenges. Briefings Bioinform. 20(1): 235-244 (2019) - [j17]Folker Meyer, Saurabh Bagchi, Somali Chaterji, Wolfgang Gerlach, Ananth Grama, Travis Harrison, Tobias Paczian, William L. Trimble, Andreas Wilke:
MG-RAST version 4 - lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis. Briefings Bioinform. 20(4): 1151-1159 (2019) - [j16]Tobias Paczian, William L. Trimble, Wolfgang Gerlach, Travis Harrison, Andreas Wilke, Folker Meyer:
The MG-RAST API explorer: an on-ramp for RESTful query composition. BMC Bioinform. 20(1): 561:1-561:8 (2019) - [c17]Ashraf Mahgoub, Paul Wood, Alexander Medoff, Subrata Mitra, Folker Meyer, Somali Chaterji, Saurabh Bagchi:
SOPHIA: Online Reconfiguration of Clustered NoSQL Databases for Time-Varying Workloads. USENIX ATC 2019: 223-240 - 2018
- [i1]Folker Meyer, Robert D. Finn, Wolfgang Gerlach, Alex L. Mitchell, Travis Harrison, Andreas Wilke:
On the way to research objects for environmental genomics (or metagenomics). RO 2018 - 2017
- [c16]Ashraf Mahgoub, Sachandhan Ganesh, Folker Meyer, Ananth Grama, Somali Chaterji:
Suitability of NoSQL systems - Cassandra and ScyllaDB - For IoT workloads. COMSNETS 2017: 476-479 - [c15]Ashraf Mahgoub, Paul Wood, Sachandhan Ganesh, Subrata Mitra, Wolfgang Gerlach, Travis Harrison, Folker Meyer, Ananth Grama, Saurabh Bagchi, Somali Chaterji:
Rafiki: a middleware for parameter tuning of NoSQL datastores for dynamic metagenomics workloads. Middleware 2017: 28-40 - 2016
- [j15]Andreas Wilke, Jared Bischof, Wolfgang Gerlach, Elizabeth M. Glass, Travis Harrison, Kevin P. Keegan, Tobias Paczian, William L. Trimble, Saurabh Bagchi, Ananth Grama, Somali Chaterji, Folker Meyer:
The MG-RAST metagenomics database and portal in 2015. Nucleic Acids Res. 44(Database-Issue): 590-594 (2016) - [c14]Caitlin Ross, Misbah Mubarak, John Jenkins, Philip H. Carns, Christopher D. Carothers, Robert B. Ross, Wei Tang, Wolfgang Gerlach, Folker Meyer:
A Case Study in Using Discrete-Event Simulation to Improve the Scalability of MG-RAST. SIGSIM-PADS 2016: 211-220 - 2015
- [j14]Andreas Wilke, Jared Bischof, Travis Harrison, Tom Brettin, Mark D'Souza, Wolfgang Gerlach, Hunter Matthews, Tobias Paczian, Jared Wilkening, Elizabeth M. Glass, Narayan Desai, Folker Meyer:
A RESTful API for Accessing Microbial Community Data for MG-RAST. PLoS Comput. Biol. 11(1) (2015) - [c13]Kanak Mahadik, Wei Tang, Saurabh Bagchi, Folker Meyer:
Do specialized distributed frameworks for bioinformatics applications obtain better performance over generic ones? BCB 2015: 538 - [c12]Andreas Wilke, Wolfgang Gerlach, Travis Harrison, Tobias Paczian, Wei Tang, William L. Trimble, Jared Wilkening, Narayan Desai, Folker Meyer:
Shock: Active Storage for Multicloud Streaming Data Analysis. BDC 2015: 68-72 - [c11]Wolfgang Gerlach, Wei Tang, Andreas Wilke, Dan Olson, Folker Meyer:
Container Orchestration for Scientific Workflows. IC2E 2015: 377-378 - 2014
- [c10]Wei Tang, Jared Bischof, Narayan Desai, Kanak Mahadik, Wolfgang Gerlach, Travis Harrison, Andreas Wilke, Folker Meyer:
Workload characterization for MG-RAST metagenomic data analytics service in the cloud. IEEE BigData 2014: 56-63 - [c9]Wei Tang, Jonathan Jenkins, Folker Meyer, Robert B. Ross, Rajkumar Kettimuthu, Linda Winkler, Xi Yang, Thomas Lehman, Narayan Desai:
Data-Aware Resource Scheduling for Multicloud Workflows: A Fine-Grained Simulation Approach. CloudCom 2014: 887-892 - [c8]Wolfgang Gerlach, Wei Tang, Kevin P. Keegan, Travis Harrison, Andreas Wilke, Jared Bischof, Mark D'Souza, Scott Devoid, Daniel E. Murphy-Olson, Narayan Desai, Folker Meyer:
Skyport: container-based execution environment management for multi-cloud scientific workflows. DataCloud@SC 2014: 25-32 - 2013
- [c7]Wei Tang, Jared Wilkening, Narayan Desai, Wolfgang Gerlach, Andreas Wilke, Folker Meyer:
A scalable data analysis platform for metagenomics. IEEE BigData 2013: 21-26 - 2012
- [j13]Andreas Wilke, Travis Harrison, Jared Wilkening, Dawn Field, Elizabeth M. Glass, Nikos Kyrpides, Konstantinos Mavrommatis, Folker Meyer:
The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools. BMC Bioinform. 13: 141 (2012) - [j12]William L. Trimble, Kevin P. Keegan, Mark D'Souza, Andreas Wilke, Jared Wilkening, Jack A. Gilbert, Folker Meyer:
Short-read reading-frame predictors are not created equal: sequence error causes loss of signal. BMC Bioinform. 13: 183 (2012) - [j11]Kevin P. Keegan, William L. Trimble, Jared Wilkening, Andreas Wilke, Travis Harrison, Mark D'Souza, Folker Meyer:
A Platform-Independent Method for Detecting Errors in Metagenomic Sequencing Data: DRISEE. PLoS Comput. Biol. 8(6) (2012) - 2011
- [j10]Suparna Mitra, Paul Rupek, Daniel C. Richter, Tim Urich, Jack A. Gilbert, Folker Meyer, Andreas Wilke, Daniel H. Huson:
Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG. BMC Bioinform. 12(S-1): S21 (2011) - [j9]Andreas Wilke, Jared Wilkening, Elizabeth M. Glass, Narayan Desai, Folker Meyer:
An experience report: porting the MG-RAST rapid metagenomics analysis pipeline to the cloud. Concurr. Comput. Pract. Exp. 23(17): 2250-2257 (2011) - [c6]Peter E. Larsen, Frank Collart, Folker Meyer, Jack A. Gilbert:
Predicted Relative Metabolomic Turnover - Predicting Changes in the Environmental Metabolome from the Metagenome. BIOINFORMATICS 2011: 337-345 - [c5]Folker Meyer, Nikos Kyrpides:
Proposal for Open Discussion - Informatics Challenges for Next Generation Sequencing Metagenomics Experiments. BIOINFORMATICS 2011: 363-366
2000 – 2009
- 2009
- [j8]Florent E. Angly, Dana Willner, Alejandra Prieto-Davó, Robert A. Edwards, Robert Schmieder, Rebecca Vega-Thurber, Dionysios A. Antonopoulos, Katie Barott, Matthew T. Cottrell, Christelle Desnues, Elizabeth A. Dinsdale, Mike Furlan, Matthew Haynes, Matthew R. Henn, Yongfei Hu, David L. Kirchman, Tracey McDole, John D. McPherson, Folker Meyer, R. Michael Miller, Egbert Mundt, Robert K. Naviaux, Beltran Rodriguez-Mueller, Rick Stevens, Linda Wegley, Lixin Zhang, Baoli Zhu, Forest Rohwer:
The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes. PLoS Comput. Biol. 5(12) (2009) - [c4]Jared Wilkening, Andreas Wilke, Narayan Desai, Folker Meyer:
Using clouds for metagenomics: A case study. CLUSTER 2009: 1-6 - 2008
- [j7]Folker Meyer, Daniel Paarmann, Mark D'Souza, Robert Olson, Elizabeth M. Glass, Michael Kubal, Tobias Paczian, Alexis A. Rodriguez, Rick Stevens, Andreas Wilke, Jared Wilkening, Robert A. Edwards:
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinform. 9 (2008) - 2007
- [j6]Leslie Klis McNeil, Claudia Reich, Ramy K. Aziz, Daniela Bartels, Matthew Cohoon, Terry Disz, Robert A. Edwards, Svetlana Gerdes, Kaitlyn Hwang, Michael Kubal, Gohar Rem Margaryan, Folker Meyer, William Mihalo, Gary J. Olsen, Robert Olson, Andrei Osterman, Daniel Paarmann, Tobias Paczian, Bruce D. Parrello, Gordon D. Pusch, Dmitry A. Rodionov, Xinghua Shi, Olga Vassieva, Veronika Vonstein, Olga Zagnitko, Fangfang Xia, Jenifer Zinner, Ross A. Overbeek, Rick Stevens:
The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation. Nucleic Acids Res. 35(Database-Issue): 347-353 (2007) - 2006
- [c3]Lutz Krause, Naryttza N. Diaz, Daniela Bartels, Robert A. Edwards, Alfred Pühler, Forest Rohwer, Folker Meyer, Jens Stoye:
Finding novel genes in bacterial communities isolated from the environment. ISMB (Supplement of Bioinformatics) 2006: 281-289 - 2005
- [j5]Daniela Bartels, Sebastian Kespohl, Stefan P. Albaum, Tanja Drüke, Alexander Goesmann, Julia Herold, Olaf Kaiser, Alfred Pühler, Friedhelm Pfeiffer, Günter Raddatz, Jens Stoye, Folker Meyer, Stephan C. Schuster:
BACCardI-a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinform. 21(7): 853-859 (2005) - [j4]Alexander Goesmann, Burkhard Linke, Daniela Bartels, Michael Dondrup, Lutz Krause, Heiko Neuweger, Sebastian Oehm, Tobias Paczian, Andreas Wilke, Folker Meyer:
BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser. Nucleic Acids Res. 33(Web-Server-Issue): 710-716 (2005) - 2004
- [j3]Alice Carolyn McHardy, Alexander Goesmann, Alfred Pühler, Folker Meyer:
Development of joint application strategies for two microbial gene finders. Bioinform. 20(10): 1622-1631 (2004) - 2002
- [j2]Alexander Goesmann, Martin Haubrock, Folker Meyer, Jörn Kalinowski, Robert Giegerich:
PathFinder: reconstruction and dynamic visualization of metabolic pathways. Bioinform. 18(1): 124-129 (2002) - 2001
- [b1]Folker Meyer:
GENDB: a second generation genome annotation system. Bielefeld University, Germany, 2001
1990 – 1999
- 1998
- [j1]Jens Stoye, Dirk Evers, Folker Meyer:
Rose: generating sequence families. Bioinform. 14(2): 157-163 (1998) - 1997
- [c2]Jens Stoye, Dirk Evers, Folker Meyer:
Generating Benchmarks for Multiple Sequence Alignments and Phylogenic Reconstructions. ISMB 1997: 303-306 - 1996
- [c1]Robert Giegerich, Folker Meyer, Chris Schleiermacher:
GeneFisher-Software Support for the Detection of Postulated Genes. ISMB 1996: 68-77
Coauthor Index
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