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2020 – today
- 2023
[j25]Hanbo Chen
, Bin Xiong, Yuguo Lu, Qiyun Jiang, Lishan Huang, Shuai Zhou:
Three-Dimensional Modeling of Marine Controlled Source Electromagnetic Using a New High-Order Finite Element Method With an Absorption Boundary Condition. IEEE Trans. Geosci. Remote. Sens. 61: 1-9 (2023)- [c46]Wentao Pan, Jiangpeng Yan, Hanbo Chen, Jiawei Yang, Zhe Xu, Xiu Li, Jianhua Yao:
Human-Machine Interactive Tissue Prototype Learning for Label-Efficient Histopathology Image Segmentation. IPMI 2023: 679-691 - 2022
- [j24]Jiangpeng Yan, Hanbo Chen, Xiu Li, Jianhua Yao:
Deep contrastive learning based tissue clustering for annotation-free histopathology image analysis. Comput. Medical Imaging Graph. 97: 102053 (2022) - [c45]Jiawei Yang, Hanbo Chen, Yuan Liang, Junzhou Huang, Lei He, Jianhua Yao:
ConCL: Concept Contrastive Learning for Dense Prediction Pre-training in Pathology Images. ECCV (21) 2022: 523-539 - [c44]Jiawei Yang, Hanbo Chen, Jiangpeng Yan, Xiaoyu Chen, Jianhua Yao:
Towards Better Understanding and Better Generalization of Low-shot Classification in Histology Images with Contrastive Learning. ICLR 2022 - [c43]Jiawei Yang, Hanbo Chen, Yu Zhao, Fan Yang, Yao Zhang, Lei He, Jianhua Yao:
ReMix: A General and Efficient Framework for Multiple Instance Learning Based Whole Slide Image Classification. MICCAI (2) 2022: 35-45 - [c42]Hanbo Chen, Jiawei Yang, Daniel Maxim Iascone, Lijuan Liu, Lei He, Hanchuan Peng, Jianhua Yao:
TreeMoCo: Contrastive Neuron Morphology Representation Learning. NeurIPS 2022 - [i6]Jiawei Yang, Hanbo Chen, Jiangpeng Yan, Xiaoyu Chen, Jianhua Yao:
Towards better understanding and better generalization of few-shot classification in histology images with contrastive learning. CoRR abs/2202.09059 (2022) - [i5]Jiangpeng Yan, ChengHui Yu, Hanbo Chen, Zhe Xu, Junzhou Huang, Xiu Li, Jianhua Yao:
Seeking Common Ground While Reserving Differences: Multiple Anatomy Collaborative Framework for Undersampled MRI Reconstruction. CoRR abs/2206.07364 (2022) - [i4]Jiawei Yang, Hanbo Chen, Yu Zhao, Fan Yang, Yao Zhang, Lei He, Jianhua Yao:
ReMix: A General and Efficient Framework for Multiple Instance Learning based Whole Slide Image Classification. CoRR abs/2207.01805 (2022) - [i3]Jiawei Yang, Hanbo Chen, Yuan Liang, Junzhou Huang, Lei He, Jianhua Yao:
ConCL: Concept Contrastive Learning for Dense Prediction Pre-training in Pathology Images. CoRR abs/2207.06733 (2022) - [i2]Wentao Pan, Jiangpeng Yan, Hanbo Chen, Jiawei Yang, Zhe Xu, Xiu Li, Jianhua Yao:
Human-machine Interactive Tissue Prototype Learning for Label-efficient Histopathology Image Segmentation. CoRR abs/2211.14491 (2022) - 2021
- [j23]Biao Wu, Hanbo Chen, Zhikang Luo:
Board games for quantum computers. Sci. China Inf. Sci. 64(2) (2021) - [c41]Jiangpeng Yan, Hanbo Chen, Kang Wang, Yan Ji, Yuyao Zhu, Jingjing Li, Dong Xie, Zhe Xu, Junzhou Huang, Shuqun Cheng, Xiu Li, Jianhua Yao:
Hierarchical Attention Guided Framework for Multi-resolution Collaborative Whole Slide Image Segmentation. MICCAI (8) 2021: 153-163 - [c40]Hanbo Chen, Kang Wang, Yuyao Zhu, Jiangpeng Yan, Yan Ji, Jingjing Li, Dong Xie, Junzhou Huang, Shuqun Cheng, Jianhua Yao:
From Pixel to Whole Slide: Automatic Detection of Microvascular Invasion in Hepatocellular Carcinoma on Histopathological Image via Cascaded Networks. MICCAI (8) 2021: 196-205 - [p1]Hanbo Chen:
Multi-resolution Multi-task Network and Polyp Tracking. Computer-Aided Analysis of Gastrointestinal Videos 2021: 81-89 - 2020
- [j22]Yujie Li, Heng Huang, Hanbo Chen, Tianming Liu:
Deep Neural Networks for In Situ Hybridization Grid Completion and Clustering. IEEE ACM Trans. Comput. Biol. Bioinform. 17(2): 536-546 (2020) - [i1]Biao Wu, Hanbo Chen, Zhikang Luo:
Board Games for Quantum Computers. CoRR abs/2004.08272 (2020)
2010 – 2019
- 2019
- [c39]He Zheng, Hanbo Chen, Junzhou Huang, Xuzhi Li, Xiao Han, Jianhua Yao:
Polyp Tracking in Video Colonoscopy Using Optical Flow With an On-The-Fly Trained CNN. ISBI 2019: 79-82 - [c38]Hanbo Chen, Xiao Han, Xinjuan Fan, Xiaoying Lou, Hailing Liu, Junzhou Huang, Jianhua Yao:
Rectified Cross-Entropy and Upper Transition Loss for Weakly Supervised Whole Slide Image Classifier. MICCAI (1) 2019: 351-359 - [c37]Yifan Zhang, Hanbo Chen, Ying Wei, Peilin Zhao, Jiezhang Cao, Xinjuan Fan, Xiaoying Lou, Hailing Liu, Jinlong Hou, Xiao Han, Jianhua Yao, Qingyao Wu, Mingkui Tan, Junzhou Huang:
From Whole Slide Imaging to Microscopy: Deep Microscopy Adaptation Network for Histopathology Cancer Image Classification. MICCAI (1) 2019: 360-368 - 2018
- [j21]Tuo Zhang, Jun Kong, Ke Jing, Hanbo Chen, Xi Jiang, Longchuan Li, Lei Guo, Jianfeng Lu, Xiaoping Hu, Tianming Liu:
Optimization of macaque brain DMRI connectome by neuron tracing and myelin stain data. Comput. Medical Imaging Graph. 69: 9-20 (2018) - [j20]Yu Zhao, Qinglin Dong, Shu Zhang, Wei Zhang, Hanbo Chen, Xi Jiang, Lei Guo, Xintao Hu, Junwei Han, Tianming Liu:
Automatic Recognition of fMRI-Derived Functional Networks Using 3-D Convolutional Neural Networks. IEEE Trans. Biomed. Eng. 65(9): 1975-1984 (2018) - [c36]Xuhui Chen, Yi Lu, Junjie Bai, Youbing Yin, Kunlin Cao, Yuwei Li, Hanbo Chen, Qi Song, Jun Wu:
Train a 3D U-Net to segment cranial vasculature in CTA volume without manual annotation. ISBI 2018: 559-563 - [c35]Fangfei Ge, Hanbo Chen, Tuo Zhang, Xianqiao Wang, Lin Yuan, Xintao Hu, Lei Guo, Tianming Liu:
A novel framework for analyzing cortical folding patterns based on sulcal baselines and gyral crestlines. ISBI 2018: 1043-1047 - [c34]Jiali Liu, Wanyu Li, Ningbo Zhao, Kunlin Cao, Youbing Yin, Qi Song, Hanbo Chen, Xuehao Gong:
Integrate Domain Knowledge in Training CNN for Ultrasonography Breast Cancer Diagnosis. MICCAI (2) 2018: 868-875 - 2017
- [j19]Hanbo Chen, Daniel Maxim Iascone, Nuno Maçarico da Costa, Ed S. Lein, Tianming Liu, Hanchuan Peng:
Fast assembling of neuron fragments in serial 3D sections. Brain Informatics 4(3): 183-186 (2017) - [j18]Mir Jalil Razavi, Tuo Zhang, Hanbo Chen, Yujie Li, Simon Platt, Yu Zhao, Lei Guo, Xiaoping Hu, Xianqiao Wang, Tianming Liu:
Radial Structure Scaffolds Convolution Patterns of Developing Cerebral Cortex. Frontiers Comput. Neurosci. 11: 76 (2017) - [j17]Tuo Zhang, Mir Jalil Razavi, Hanbo Chen, Yujie Li, Xiao Li, Longchuan Li, Lei Guo, Xiaoping Hu, Tianming Liu, Xianqiao Wang:
Mechanisms of circumferential gyral convolution in primate brains. J. Comput. Neurosci. 42(3): 217-229 (2017) - [j16]Hanbo Chen, Yujie Li, Fangfei Ge, Gang Li, Dinggang Shen, Tianming Liu:
Gyral net: A new representation of cortical folding organization. Medical Image Anal. 42: 14-25 (2017) - [j15]Yu Zhao, Qinglin Dong, Hanbo Chen, Armin Iraji, Yujie Li, Milad Makkie, Zhifeng Kou, Tianming Liu:
Constructing fine-granularity functional brain network atlases via deep convolutional autoencoder. Medical Image Anal. 42: 200-211 (2017) - [j14]Yujie Li, Hanbo Chen, Xi Jiang, Xiang Li, Jinglei Lv, Meng Li, Hanchuan Peng, Joe Z. Tsien, Tianming Liu:
Transcriptome Architecture of Adult Mouse Brain Revealed by Sparse Coding of Genome-Wide In Situ Hybridization Images. Neuroinformatics 15(3): 285-295 (2017) - [c33]Yu Zhao, Shu Zhang, Hanbo Chen, Wei Zhang, Jinglei Lv, Xi Jiang, Dinggang Shen, Tianming Liu:
A novel framework for groupwise registration of fMRI images based on common functional networks. ISBI 2017: 485-489 - [c32]Hanbo Chen, Yu Zhao, Yujie Li, Jinglei Lv, Tianming Liu:
Inter-subject fMRI registration based on functional networks. ISBI 2017: 863-867 - [c31]Dehua Ren, Yu Zhao, Hanbo Chen, Qinglin Dong, Jinglei Lv, Tianming Liu:
3-D functional brain network classification using Convolutional Neural Networks. ISBI 2017: 1217-1221 - 2016
- [c30]Jinglei Lv, Armin Iraji, Hanbo Chen, Fangfei Ge, Lei Guo, Xin Zhang, Zhifeng Kou, Tianming Liu:
Group-wise sparse representation of brain states reveal network abnormalities in mild traumatic brain injury. ISBI 2016: 58-61 - [c29]Yujie Li, Hanbo Chen, Xi Jiang, Xiang Li, Jinglei Lv, Hanchuan Peng, Joe Z. Tsien, Tianming Liu:
Discover Mouse Gene Coexpression Landscape Using Dictionary Learning and Sparse Coding. MICCAI (1) 2016: 63-71 - 2015
- [j13]Hanbo Chen, Hang Xiao, Tianming Liu, Hanchuan Peng:
SmartTracing: self-learning-based Neuron reconstruction. Brain Informatics 2(3): 135-144 (2015) - [j12]Jinglei Lv, Xi Jiang, Xiang Li, Dajiang Zhu, Hanbo Chen, Tuo Zhang, Shu Zhang, Xintao Hu, Junwei Han, Heng Huang, Jing Zhang, Lei Guo, Tianming Liu:
Sparse representation of whole-brain fMRI signals for identification of functional networks. Medical Image Anal. 20(1): 112-134 (2015) - [j11]Hanbo Chen, Tao Liu, Yu Zhao, Tuo Zhang, Yujie Li, Meng Li, Hongmiao Zhang, Hui Kuang, Lei Guo, Joe Z. Tsien, Tianming Liu:
Optimization of large-scale mouse brain connectome via joint evaluation of DTI and neuron tracing data. NeuroImage 115: 202-213 (2015) - [j10]Xi Jiang, Tuo Zhang, Dajiang Zhu, Kaiming Li, Hanbo Chen, Jinglei Lv, Xintao Hu, Junwei Han, Dinggang Shen, Lei Guo, Tianming Liu:
Anatomy-Guided Dense Individualized and Common Connectivity-Based Cortical Landmarks (A-DICCCOL). IEEE Trans. Biomed. Eng. 62(4): 1108-1119 (2015) - [j9]Jinglei Lv, Xi Jiang, Xiang Li, Dajiang Zhu, Shu Zhang, Shijie Zhao, Hanbo Chen, Tuo Zhang, Xintao Hu, Junwei Han, Jieping Ye, Lei Guo, Tianming Liu:
Holistic Atlases of Functional Networks and Interactions Reveal Reciprocal Organizational Architecture of Cortical Function. IEEE Trans. Biomed. Eng. 62(4): 1120-1131 (2015) - [c28]Tuo Zhang, Hanbo Chen, Xi Jiang, Bao Ge, Lei Guo, Tianming Liu:
Group-wise consistent sulcal fundi segmentation based on DMRI-derived ODF features. ISBI 2015: 638-641 - [c27]Ke Jing, Tuo Zhang, Jianfeng Lu, Hanbo Chen, Xi Jiang, Lei Guo, Longchuan Li, Xiaoping Hu, Jinglei Lv, Bao Ge, Tianming Liu:
Multiscale and multimodal fusion of tract-tracing and DTI-derived fibers in macaque brains. ISBI 2015: 938-942 - [c26]Hanbo Chen, Armin Iraji, Xi Jiang, Jinglei Lv, Zhifeng Kou, Tianming Liu:
Longitudinal Analysis of Brain Recovery after Mild Traumatic Brain Injury Based on Groupwise Consistent Brain Network Clusters. MICCAI (2) 2015: 194-201 - [c25]Tuo Zhang, Jun Kong, Ke Jing, Hanbo Chen, Xi Jiang, Longchuan Li, Lei Guo, Jianfeng Lu, Xiaoping Hu, Tianming Liu:
Multi-scale and Multimodal Fusion of Tract-Tracing, Myelin Stain and DTI-derived Fibers in Macaque Brains. MICCAI (2) 2015: 246-254 - [c24]Yue Yuan, Hanbo Chen, Jianfeng Lu, Tuo Zhang, Tianming Liu:
Distance Networks for Morphological Profiling and Characterization of DICCCOL Landmarks. MICCAI (2) 2015: 380-387 - 2014
- [j8]Tuo Zhang, Hanbo Chen, Lei Guo, Kaiming Li, Longchuan Li, Shu Zhang, Dinggang Shen, Xiaoping Hu, Tianming Liu:
Characterization of U-shape streamline fibers: Methods and applications. Medical Image Anal. 18(5): 795-807 (2014) - [j7]Dajiang Zhu, Tuo Zhang, Xi Jiang, Xintao Hu, Hanbo Chen, Ning Yang, Jinglei Lv, Junwei Han, Lei Guo, Tianming Liu:
Fusing DTI and fMRI data: A survey of methods and applications. NeuroImage 102: 184-191 (2014) - [c23]Hanbo Chen, Kaiming Li, Dajiang Zhu, Lei Guo, Xi Jiang, Tianming Liu:
Group-wise optimization and individualized prediction of structural connectomes. ISBI 2014: 742-745 - [c22]Hanbo Chen, Xiang Yu, Xi Jiang, Kaiming Li, Longchuan Li, Xintao Hu, Junwei Han, Lei Guo, Xiaoping Hu, Tianming Liu:
Evolutionarily-preserved consistent gyral folding patterns across primate brains. ISBI 2014: 1218-1221 - [c21]Hanbo Chen, Yu Zhao, Tuo Zhang, Hongmiao Zhang, Hui Kuang, Meng Li, Joe Z. Tsien, Tianming Liu:
Construct and Assess Multimodal Mouse Brain Connectomes via Joint Modeling of Multi-scale DTI and Neuron Tracer Data. MICCAI (3) 2014: 273-280 - [c20]Dajiang Zhu, Jinglei Lv, Hanbo Chen, Tianming Liu:
Group-Wise Optimization of Common Brain Landmarks with Joint Structural and Functional Regulations. MICCAI (2) 2014: 716-723 - 2013
- [j6]Xin Zhang, Lei Guo, Xiang Li, Tuo Zhang, Dajiang Zhu, Kaiming Li, Hanbo Chen, Jinglei Lv, Changfeng Jin, Qun Zhao, Lingjiang Li, Tianming Liu:
Characterization of task-free and task-performance brain states via functional connectome patterns. Medical Image Anal. 17(8): 1106-1122 (2013) - [j5]Yixuan Yuan, Xi Jiang, Dajiang Zhu, Hanbo Chen, Kaiming Li, Peili Lv, Xiang Yu, Xiaojin Li, Shu Zhang, Tuo Zhang, Xintao Hu, Junwei Han, Lei Guo, Tianming Liu:
Meta-Analysis of Functional Roles of DICCCOLs. Neuroinformatics 11(1): 47-63 (2013) - [j4]Hanbo Chen, Kaiming Li, Dajiang Zhu, Xi Jiang, Yixuan Yuan, Peili Lv, Tuo Zhang, Lei Guo, Dinggang Shen, Tianming Liu:
Inferring Group-Wise Consistent Multimodal Brain Networks via Multi-View Spectral Clustering. IEEE Trans. Medical Imaging 32(9): 1576-1586 (2013) - [c19]Dajiang Zhu, Xiang Li, Xi Jiang, Hanbo Chen, Dinggang Shen, Tianming Liu:
Exploring High-Order Functional Interactions via Structurally-Weighted LASSO Models. IPMI 2013: 13-24 - [c18]Xiang Yu, Hanbo Chen, Tuo Zhang, Xintao Hu, Lei Guo, Tianming Liu:
Joint analysis of gyral folding and fiber shape patterns. ISBI 2013: 85-88 - [c17]Peng Wang, Dajiang Zhu, Xiang Li, Hanbo Chen, Xi Jiang, Li Sun, Qingjiu Cao, Li An, Tianming Liu, Yufeng Wang:
Identifying functional connectomics abnormality in attention deficit hyperactivity disorder. ISBI 2013: 544-547 - [c16]Jia Chen, Jianfeng Lu, Hanbo Chen, Dajiang Zhu, Tianming Liu:
Assessing regularity and variability of cortical folding patterns of dicccols. ISBI 2013: 974-977 - [c15]Hanbo Chen, Kaiming Li, Dajiang Zhu, Tianming Liu:
Identifying consistent brain networks via maximizing predictability of functional connectome from structural connectome. ISBI 2013: 978-981 - [c14]Hanbo Chen, Tuo Zhang, Tianming Liu:
Identifying Group-Wise Consistent White Matter Landmarks via Novel Fiber Shape Descriptor. MICCAI (1) 2013: 66-73 - [c13]Shu Zhang, Xiang Li, Jinglei Lv, Xi Jiang, Dajiang Zhu, Hanbo Chen, Tuo Zhang, Lei Guo, Tianming Liu:
Sparse Representation of Higher-Order Functional Interaction Patterns in Task-Based FMRI Data. MICCAI (3) 2013: 626-634 - 2012
- [j3]Kaiming Li, Lei Guo, Carlos Faraco, Dajiang Zhu, Hanbo Chen, Yixuan Yuan, Jinglei Lv, Fan Deng, Xi Jiang, Tuo Zhang, Xintao Hu, Degang Zhang, L. Stephen Miller, Tianming Liu:
Visual analytics of brain networks. NeuroImage 61(1): 82-97 (2012) - [c12]Tuo Zhang, Lei Guo, Hanbo Chen, Xintao Hu, Kaiming Li, Tianming Liu:
Constructing Fiber Atlases for Functional ROIs via fMRI-Guided DTI Image Registration. MBIA 2012: 167-174 - [c11]Hanbo Chen, Xiao Cai, Dajiang Zhu, Feiping Nie, Tianming Liu, Heng Huang:
Group-Wise Consistent Parcellation of Gyri via Adaptive Multi-view Spectral Clustering of Fiber Shapes. MICCAI (2) 2012: 271-279 - [c10]Hanbo Chen, Kaiming Li, Dajiang Zhu, Tuo Zhang, Changfeng Jin, Lei Guo, Lingjiang Li, Tianming Liu:
Inferring Group-Wise Consistent Multimodal Brain Networks via Multi-view Spectral Clustering. MICCAI (3) 2012: 297-304 - 2011
- [j2]Hanbo Chen, Paul C. Boutros:
VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R. BMC Bioinform. 12: 35 (2011) - [j1]Degang Zhang, Lei Guo, Xintao Hu, Kaiming Li, Dajiang Zhu, Xi Jiang, Hanbo Chen, Fan Deng, Qun Zhao, Tianming Liu:
Identification of cortical landmarks based on structural connectivity to subcortical regions. Int. J. Comput. Biol. Drug Des. 4(4): 345-360 (2011) - [c9]Dajiang Zhu, Degang Zhang, Carlos Faraco, Kaiming Li, Fan Deng, Hanbo Chen, Xi Jiang, Lei Guo, L. Stephen Miller, Tianming Liu:
Discovering Dense and Consistent Landmarks in the Brain. IPMI 2011: 97-110 - [c8]Dajiang Zhu, Kaiming Li, Fan Deng, Degang Zhang, Xi Jiang, Hanbo Chen, Lei Guo, L. Stephen Miller, Tianming Liu:
Fine granularity parcellation of gyrus via fiber shape and connectivity based features. ISBI 2011: 817-821 - [c7]Dajiang Zhu, Kaiming Li, Carlos Faraco, Fan Deng, Degang Zhang, Xi Jiang, Hanbo Chen, Lei Guo, L. Stephen Miller, Tianming Liu:
Optimization of functional brain ROIs via maximization of consistency of structural connectivity profiles. ISBI 2011: 2150-2154 - [c6]Degang Zhang, Lei Guo, Dajiang Zhu, Tuo Zhang, Xintao Hu, Kaiming Li, Xi Jiang, Hanbo Chen, Jinglei Lv, Fan Deng, Qun Zhao:
Identification of Cortical Landmarks Based on Consistent Connectivity to Subcortical Structures. MBIA 2011: 68-75 - [c5]Hanbo Chen, Tuo Zhang, Kaiming Li, Xintao Hu, Lei Guo, Tianming Liu:
Assessing Regularity and Variability of Cortical Folding Patterns of Working Memory ROIs. MICCAI (2) 2011: 318-326 - 2010
- [c4]Kaiming Li, Lei Guo, Carlos Faraco, Dajiang Zhu, Fan Deng, Tuo Zhang, Xi Jiang, Degang Zhang, Hanbo Chen, Xintao Hu, L. Stephen Miller, Tianming Liu:
Human-centered attention models for video summarization. ICMI-MLMI 2010: 27:1-27:8 - [c3]Hanbo Chen, Lei Guo, Jingxin Nie, Tuo Zhang, Xintao Hu, Tianming Liu:
A Dynamic Skull Model for Simulation of Cerebral Cortex Folding. MICCAI (2) 2010: 412-419 - [c2]Xintao Hu, Fan Deng, Kaiming Li, Tuo Zhang, Hanbo Chen, Xi Jiang, Jinglei Lv, Dajiang Zhu, Carlos Faraco, Degang Zhang, Arsham Mesbah, Junwei Han, Xian-Sheng Hua, Li Xie, L. Stephen Miller, Lei Guo, Tianming Liu:
Bridging low-level features and high-level semantics via fMRI brain imaging for video classification. ACM Multimedia 2010: 451-460 - [c1]Kaiming Li, Lei Guo, Carlos Faraco, Dajiang Zhu, Fan Deng, Tuo Zhang, Xi Jiang, Degang Zhang, Hanbo Chen, Xintao Hu, L. Stephen Miller, Tianming Liu:
Individualized ROI Optimization via Maximization of Group-wise Consistency of Structural and Functional Profiles. NIPS 2010: 1369-1377
Coauthor Index
[j22] [j21] [j20] [c35] [j19] [j18] [j17] [j16] [j15] [j14] [c33] [c32] [c31] [c30] [c29] [j13] [j12] [j11] [j10] [j9] [c28] [c27] [c26] [c25] [c24] [j8] [j7] [c23] [c22] [c21] [c20] [j6] [j5] [j4] [c19] [c18] [c17] [c16] [c15] [c14] [c13] [j3] [c12] [c11] [c10] [j1] [c9] [c8] [c7] [c5] [c4] [c3] [c2] [c1]
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