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Matthew W. Vaughn Matthew Vaughn Matt Vaughn https://github.com/mwvaughn https://orcid.org/0000-0002-1384-4283 https://www.wikidata.org/entity/Q30524398
Tyson L. Swetnam Parker B. Antin Ryan Bartelme Alexander Bucksch David Camhy Greg Chism Illyoung Choi Amanda M. Cooksey Michele Cosi Cindy Cowen Michael Culshaw-Maurer Robert Davey Sean Davey Upendra Devisetty Tony Edgin Andy Edmonds Dmitry V. Fedorov Jeremy Frady John Fonner Jeffrey K. Gillan Iqbal Hossain 0001 Blake Joyce Konrad Lang Tina Lee Shelley Littin Ian McEwen Nirav C. Merchant David Micklos Andrew Nelson Ashley Ramsey Sarah Roberts Paul Sarando Edwin Skidmore Jawon Song Mary Margaret Sprinkle Sriram Srinivasan Dan Stanzione Jonathan D. Strootman Sarah Stryeck Reetu Tuteja Matthew Vaughn Mojib Wali Mariah Wall Ramona Walls Liya Wang Todd Wickizer Jason Williams 0003 John Wregglesworth Eric Lyons 0002 CyVerse: Cyberinfrastructure for open science. 2024 February 20 PLoS Comput. Biol. 2 https://doi.org/10.1371/journal.pcbi.1011270 db/journals/ploscb/ploscb20.html#SwetnamABBCCCCCCCDDDEEFFFGHJLLLM24
Mohammed Eslami Amin Espah Borujeni Hamed Eramian Mark Weston George Zheng Joshua Urrutia Carolyn Corbet Diveena Becker Paul Maschhoff Katie Clowers Alexander Cristofaro Hamid Doost Hosseini D. Benjamin Gordon Yuval Dorfan Jedediah Singer Matthew Vaughn Niall Gaffney John Fonner Joe Stubbs Christopher A. Voigt Enoch Yeung Prediction of whole-cell transcriptional response with machine learning. 404-409 2022 38 Bioinform. 2 https://doi.org/10.1093/bioinformatics/btab676 db/journals/bioinformatics/bioinformatics38.html#EslamiBEWZUCBMC22
John West 0001 Paul A. Navrátil Maytal Dahan Matthew Vaughn Large Scale Science on NSF's Frontera System. 10-13 2021 23 Comput. Sci. Eng. 3 https://doi.org/10.1109/MCSE.2021.3070962 https://www.wikidata.org/entity/Q113312035 db/journals/cse/cse23.html#WestNDV21
Pnina Fichman Matthew Vaughn The relationships between misinformation and outrage trolling tactics on two Yahoo! Answers categories. 1498-1510 2021 72 J. Assoc. Inf. Sci. Technol. 12 https://doi.org/10.1002/asi.24497 db/journals/jasis/jasis72.html#FichmanV21
Amit Ruhela Stephen Lien Harrell Richard Todd Evans Gregory J. Zynda John M. Fonner Matt Vaughn Tommy Minyard John Cazes Characterizing Containerized HPC Applications Performance at Petascale on CPU and GPU Architectures. 411-430 2021 ISC https://doi.org/10.1007/978-3-030-78713-4_22 conf/supercomputer/2021 db/conf/supercomputer/isc2021.html#RuhelaHEZFVMC21 David Y. Hancock Jeremy Fischer John Michael Lowe Winona Snapp-Childs Marlon E. Pierce Suresh Marru J. Eric Coulter Matthew Vaughn Brian W. Beck Nirav C. Merchant Edwin Skidmore Gwen A. Jacobs Jetstream2: Accelerating cloud computing via Jetstream. 11:1-11:8 2021 PEARC https://doi.org/10.1145/3437359.3465565 conf/xsede/2021 db/conf/xsede/pearc2021.html#HancockFLSPMCVB21 Shannon M. Oltmann Sarah Barriage Devon L. Greyson Matthew Vaughn How to undertake ideologically contentious research: Leaning on reflexivity and positionality to address uncomfortable disjuncture's in information research. 2020 ASIST https://doi.org/10.1002/pra2.282 conf/asist/2020 db/conf/asist/asist2020.html#OltmannBGV20 Joe Stubbs Julia Looney Marjo Poindexter Elias Chalhoub Gregory J. Zynda Erik S. Ferlanti Matthew Vaughn John M. Fonner Maytal Dahan Integrating Jupyter into Research Computing Ecosystems: Challenges and Successes in Architecting JupyterHub for Collaborative Research Computing Ecosystems. 91-98 2020 PEARC https://doi.org/10.1145/3311790.3396648 conf/xsede/2020 db/conf/xsede/pearc2020.html#StubbsLPCZFVFD20
David Y. Hancock Craig A. Stewart Matthew Vaughn Jeremy Fischer John Michael Lowe George W. Turner Tyson Lee Swetnam Tyler K. Chafin Enis Afgan Marlon E. Pierce Winona Snapp-Childs Jetstream - Early operations performance, adoption, and impacts. 2019 31 Concurr. Comput. Pract. Exp. 16 https://doi.org/10.1002/cpe.4683 db/journals/concurrency/concurrency31.html#HancockSVFLTSCA19
Francis C. Motta John Harer Nick Leiby Franco Marinozzi Scott Novotney Gabe Rocklin Jed Singer Devin Strickland Matt Vaughn Christopher J. Tralie Rossella Bedini Fabiano Bini Gilberto Bini Hamed Eramian Marcio Gameiro Steven B. Haase Hugh Haddox Hyperparameter Optimization of Topological Features for Machine Learning Applications. 1107-1114 2019 ICMLA https://doi.org/10.1109/ICMLA.2019.00185 conf/icmla/2019 db/conf/icmla/icmla2019.html#MottaHLMNRSSVTB19
William J. Allen Refaat E. Gabr Getaneh B. Tefera Amol S. Pednekar Matthew W. Vaughn Ponnada A. Narayana Platform for Automated Real-Time High Performance Analytics on Medical Image Data. 318-324 2018 22 IEEE J. Biomed. Health Informatics 2 https://doi.org/10.1109/JBHI.2017.2771299 https://www.wikidata.org/entity/Q87964410 db/journals/titb/titb22.html#AllenGTPVN18
Joe Stubbs Matthew Vaughn Julia Looney Rapid Development of Scalable, Distributed Computation with Abaco. 2018 IWSG https://ceur-ws.org/Vol-2357/paper3.pdf conf/iwsg/2018 db/conf/iwsg/iwsg2018.html#StubbsVL18
Gregory J. Zynda Jawon Song Lorenzo Concia Emily E. Wear Linda Hanley-Bowdoin William F. Thompson Matthew W. Vaughn Repliscan: a tool for classifying replication timing regions. 362 2017 18 BMC Bioinform. 1 https://doi.org/10.1186/s12859-017-1774-x https://www.wikidata.org/entity/Q38636606 db/journals/bmcbi/bmcbi18.html#ZyndaSCWHTV17
Alice Allen Cecilia R. Aragon Christoph Becker 0001 Jeffrey C. Carver Andrei Chis Benoît Combemale Mike Croucher Kevin Crowston Daniel Garijo Ashish Gehani Carole A. Goble Robert Haines Robert Hirschfeld James Howison Kathryn D. Huff Caroline Jay Daniel S. Katz Claude Kirchner Katie Kuksenok Ralf Lämmel Oscar Nierstrasz Matthew J. Turk Rob van Nieuwpoort Matthew Vaughn Jurgen J. Vinju Engineering Academic Software (Dagstuhl Perspectives Workshop 16252). 1-20 2017 6 Dagstuhl Manifestos 1 https://doi.org/10.4230/DagMan.6.1.1 https://www.wikidata.org/entity/Q33114300 db/journals/dagstuhl-manifestos/dagstuhl-manifestos6.html#AllenABCCCCCGGG17
Craig A. Stewart David Y. Hancock Matthew Vaughn Jeremy Fischer Tim Cockerill Liming Lee Nirav C. Merchant Therese Miller John Michael Lowe Daniel C. Stanzione Jr. James Taylor 0001 Edwin Skidmore Jetstream: performance, early experiences, and early results. 22:1-22:8 2016 XSEDE https://doi.org/10.1145/2949550.2949639 https://www.wikidata.org/entity/Q57539922 conf/xsede/2016 db/conf/xsede/xsede2016.html#StewartHVFCLMML16
Matthew R. Hanlon Matthew Vaughn Stephen A. Mock Rion Dooley Walter Moreira Joe Stubbs Christopher Town 0002 Jason R. Miller Vivek Krishnakumar Erik S. Ferlanti Eleanor Pence Araport: an application platform for data discovery. 4412-4422 2015 27 Concurr. Comput. Pract. Exp. 16 https://doi.org/10.1002/cpe.3542 https://www.wikidata.org/entity/Q57539924 db/journals/concurrency/concurrency27.html#HanlonVMDMSTMKF15
Vivek Krishnakumar Matthew R. Hanlon Sergio Contrino Erik S. Ferlanti Svetlana Karamycheva Maria Kim Benjamin D. Rosen Chia-Yi Cheng Walter Moreira Stephen A. Mock Joseph Stubbs Julie M. Sullivan Konstantinos Krampis Jason R. Miller Gos Micklem Matthew Vaughn Christopher D. Town Araport: the Arabidopsis Information Portal. 1003-1009 2015 43 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gku1200 https://www.wikidata.org/entity/Q35254350 db/journals/nar/nar43.html#KrishnakumarHCFKKRCMMSSKMMVT15
Gregory J. Zynda Niall Gaffney Mehmet M. Dalkilic Matthew W. Vaughn Feature frequency profiles for automatic sample identification using PySpark. 5:1-5:5 2015 PyHPC@SC https://doi.org/10.1145/2835857.2835862 https://www.wikidata.org/entity/Q57539929 conf/sc/2015pyhpc db/conf/sc/pyhpc2015.html#ZyndaGDV15 Craig A. Stewart Timothy M. Cockerill Ian T. Foster David Y. Hancock Nirav C. Merchant Edwin Skidmore Daniel Stanzione James Taylor 0001 Steven Tuecke George W. Turner Matthew Vaughn Niall I. Gaffney Jetstream: a self-provisioned, scalable science and engineering cloud environment. 29:1-29:8 2015 XSEDE https://doi.org/10.1145/2792745.2792774 https://www.wikidata.org/entity/Q57002856 conf/xsede/2015 db/conf/xsede/xsede2015.html#StewartCFHMSSTT15
Lars Koesterke James E. Koltes Nathan T. Weeks Kent F. Milfeld Matthew W. Vaughn James M. Reecy Daniel Stanzione Discovery of biological networks using an optimized partial correlation coefficient with information theory algorithm on Stampede's Xeon and Xeon Phi processors. 2178-2190 2014 26 Concurr. Comput. Pract. Exp. 13 https://doi.org/10.1002/cpe.3252 https://www.wikidata.org/entity/Q57539934 db/journals/concurrency/concurrency26.html#KoesterkeKWMVRS14
Richard D. LeDuc Matthew Vaughn John M. Fonner Michael Sullivan James G. Williams 0003 Philip D. Blood James Taylor 0001 William K. Barnett Leveraging the national cyberinfrastructure for biomedical research. 195-199 2014 21 J. Am. Medical Informatics Assoc. 2 https://doi.org/10.1136/amiajnl-2013-002059 https://www.wikidata.org/entity/Q28658731 db/journals/jamia/jamia21.html#LeDucVFSWBTB14
Matthew C. Cowperthwaite James D. Carson John M. Fonner Oscar Jiao Jawon Song Matthew W. Vaughn The Texas Advanced Computing Center: A complete scientific discovery environment for biomedical informatics and health science research. 2014 AMIA https://knowledge.amia.org/56638-amia-1.1540970/t-005-1.1543914/f-005-1.1543915/a-288-1.1544807/a-289-1.1544804 conf/amia/2014 db/conf/amia/amia2014.html#CowperthwaiteCF14 Matthew R. Hanlon Matthew Vaughn Stephen A. Mock Rion Dooley Walter Moreira Joe Stubbs Christopher Town 0002 Jason R. Miller Vivek Krishnakumar Erik S. Ferlanti Eleanor Pence The arabidopsis information portal: an application platform for data discovery. 38-41 2014 GCE@SC https://doi.org/10.1109/GCE.2014.10 https://doi.ieeecomputersociety.org/10.1109/GCE.2014.10 http://dl.acm.org/citation.cfm?id=2690897 https://www.wikidata.org/entity/Q57539931 conf/sc/2014gce db/conf/sc/gce2014.html#HanlonVMDMSTMKF14 Richard D. LeDuc Thomas G. Doak Le-Shin Wu Philip D. Blood Carrie L. Ganote Matthew Vaughn National Center for Genome Analysis support leverages XSEDE to support life science research. 13:1-13:7 2013 XSEDE https://doi.org/10.1145/2484762.2484790 https://www.wikidata.org/entity/Q57539940 conf/xsede/2013 db/conf/xsede/xsede2013.html#LeDucDWBGV13 Lars Koesterke Kent F. Milfeld Matthew W. Vaughn Daniel Stanzione James E. Koltes Nathan T. Weeks James M. Reecy Optimizing the PCIT algorithm on stampede's Xeon and Xeon Phi processors for faster discovery of biological networks. 14:1-14:8 2013 XSEDE https://doi.org/10.1145/2484762.2484794 https://www.wikidata.org/entity/Q57539942 conf/xsede/2013 db/conf/xsede/xsede2013.html#KoesterkeMVSKWR13 Peter E. Bailey Tapasya Patki Gregory M. Striemer Ali Akoglu David K. Lowenthal Peter Bradbury Matt Vaughn Liya Wang Stephen Goff Quantitative Trait Locus Analysis Using a Partitioned Linear Model on a GPU Cluster. 752-760 2012 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2012.93 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2012.93 https://www.wikidata.org/entity/Q57539946 conf/ipps/2012w db/conf/ipps/ipdps2012w.html#BaileyPSALBVWG12 Lars Koesterke Daniel Stanzione Matthew W. Vaughn Stephen M. Welch Waclaw Kusnierczyk Jinliang Yang Cheng-Ting Yeh Dan Nettleton Patrick S. Schnable An Efficient and Scalable Implementation of SNP-Pair Interaction Testing for Genetic Association Studies. 523-530 2011 IPDPS Workshops https://doi.org/10.1109/IPDPS.2011.190 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2011.190 https://www.wikidata.org/entity/Q57539951 conf/ipps/2011w db/conf/ipps/ipdps2011w.html#KoesterkeSVWKYYNS11
Vamsi Kundeti Sanguthevar Rajasekaran Hieu Dinh Matthew Vaughn Vishal Thapar Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs. 560 2010 11 BMC Bioinform. https://doi.org/10.1186/1471-2105-11-560 https://www.wikidata.org/entity/Q33747026 db/journals/bmcbi/bmcbi11.html#KundetiRDVT10
Enis Afgan Ali Akoglu Alice Allen William J. Allen Parker B. Antin Cecilia R. Aragon Peter E. Bailey William K. Barnett Sarah Barriage Ryan Bartelme Brian W. Beck Christoph Becker 0001 Diveena Becker Rossella Bedini Fabiano Bini Gilberto Bini Philip D. Blood Amin Espah Borujeni Peter Bradbury Alexander Bucksch David Camhy James D. Carson Jeffrey C. Carver John Cazes Tyler K. Chafin Elias Chalhoub Chia-Yi Cheng Andrei Chis Greg Chism Illyoung Choi Katie Clowers Tim CockerillTimothy M. Cockerill Benoît Combemale Lorenzo Concia Sergio Contrino Amanda M. Cooksey Carolyn Corbet Michele Cosi Eric CoulterJ. Eric Coulter Cindy Cowen Matthew C. Cowperthwaite Alexander Cristofaro Mike Croucher Kevin Crowston Michael Culshaw-Maurer Maytal Dahan Mehmet M. Dalkilic Robert Davey Sean Davey Upendra Devisetty Hieu Dinh Thomas G. Doak Rion Dooley Yuval Dorfan Tony Edgin Andy Edmonds Hamed Eramian Mohammed Eslami R. Todd EvansRichard Todd Evans Dmitry V. Fedorov Erik S. Ferlanti Pnina Fichman Jeremy Fischer John Fonner John M. Fonner Ian T. Foster Jeremy Frady Refaat E. Gabr Niall GaffneyNiall I. Gaffney Marcio Gameiro Carrie L. Ganote Daniel Garijo Ashish Gehani Jeffrey K. Gillan Carole A. Goble Stephen Goff D. Benjamin Gordon Devon L. Greyson Steven B. Haase Hugh Haddox Robert Haines David Y. Hancock Linda Hanley-Bowdoin Matthew R. Hanlon John Harer Stephen Lien Harrell Robert Hirschfeld Md. Iqbal Hossain 0001Iqbal Hossain 0001 Hamid Doost Hosseini James Howison Kathryn D. Huff Gwen A. Jacobs Caroline Jay Oscar Jiao Blake Joyce Svetlana Karamycheva Daniel S. Katz Maria Kim Claude Kirchner Lars Koesterke James E. Koltes Konstantinos Krampis Vivek Krishnakumar Kit KuksenokKatie Kuksenok Vamsi Kundeti Waclaw Kusnierczyk Ralf Lämmel Konrad Lang Richard D. LeDuc Liming Lee Tina Lee Nick Leiby Shelley Littin Julia Looney John Michael Lowe David K. Lowenthal Eric Lyons 0002 Franco Marinozzi Suresh Marru Paul Maschhoff Ian McEwen Nirav C. Merchant Gos Micklem David Micklos Kent F. Milfeld Jason R. Miller Therese Miller Tommy Minyard Stephen A. Mock Walter Moreira Francis C. Motta Ponnada A. Narayana Paul A. Navrátil Andrew Nelson Dan Nettleton Oscar Nierstrasz Rob van Nieuwpoort Scott Novotney Shannon M. Oltmann Tapasya Patki Amol PednekarAmol S. Pednekar Eleanor Pence Marlon E. Pierce Marjo Poindexter Sanguthevar Rajasekaran Ashley Ramsey James M. Reecy Sarah Roberts Gabe Rocklin Benjamin D. Rosen Amit Ruhela Paul Sarando Patrick S. Schnable Jed Singer Jedediah Singer Edwin Skidmore Winona Snapp-Childs Jawon Song Mary Margaret Sprinkle Sriram Srinivasan Daniel C. Stanzione Jr.Dan StanzioneDaniel Stanzione Craig A. Stewart Devin Strickland Gregory M. Striemer Jonathan D. Strootman Sarah Stryeck Joe StubbsJoseph Stubbs Julie M. Sullivan Michael Sullivan Tyson Lee SwetnamTyson L. Swetnam James Taylor 0001 Getaneh B. Tefera Vishal Thapar William F. Thompson Christopher D. TownChristopher Town 0002 Christopher J. Tralie Steven Tuecke Matthew J. Turk George W. Turner Reetu Tuteja Joshua Urrutia Jurgen J. Vinju Christopher A. Voigt Mojib Wali Mariah Wall Ramona Walls Liya Wang Emily E. Wear Nathan T. Weeks Stephen M. Welch John West 0001 Mark Weston Todd Wickizer James G. Williams 0003 Jason Williams 0003 John Wregglesworth Le-Shin Wu Jinliang Yang Cheng-Ting Yeh Enoch Yeung George Zheng Gregory J. Zynda