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2020 – today
- 2024
[j42]Zhuokun Feng, Yuanyuan Fu, Youping Deng:
Enhancing visibility and inclusivity of queer scientists to advance equality in academia. Patterns 5(6): 101008 (2024)- 2023
- [j41]Joshua G. Burkhart
, Guanming Wu, Xubo Song, Francesco Raimondi, Shannon K. McWeeney, Melissa H. Wong, Youping Deng:
Biology-inspired graph neural network encodes reactome and reveals biochemical reactions of disease. Patterns 4(7): 100758 (2023) - 2022
- [i1]Rosa Alcazar, Maria Alvarez, Rachel Arnold, Mentewab Ayalew, Lyle G. Best, Michael C. Campbell, Kamal Chowdhury, Katherine E. L. Cox, Christina Daulton, Youping Deng, Carla Easter, Karla Fuller, Shazia Tabassum Hakim, Ava M. Hoffman, Natalie Kucher, Andrew Lee, Joslynn Lee, Jeffrey T. Leek, Robert Meller, Loyda B. Méndez, Miguel P. Méndez-González, Stephen Mosher, Michele Nishiguchi, Siddharth Pratap, Tiffany Rolle, Sourav Roy, Rachel Saidi, Michael C. Schatz, Shurjo Sen, James Sniezek, Edu Suarez Martinez, Frederick Tan, Jennifer Vessio, Karriem Watson, Wendy Westbroek, Joseph Wilcox, Xianfa Xie:
Diversifying the Genomic Data Science Research Community. CoRR abs/2201.08443 (2022) - 2020
- [j40]Zongtao Yu, Yuanyuan Fu, Junmei Ai, Jicai Zhang, Gang Huang, Youping Deng:
Development of predicitve models to distinguish metals from non-metal toxicants, and individual metal from one another. BMC Bioinform. 21-S(9): 239 (2020) - [j39]Rebecca M. Rodriguez, Vedbar S. Khadka, Mark Menor, Brenda Y. Hernandez, Youping Deng:
Tissue-associated microbial detection in cancer using human sequencing data. BMC Bioinform. 21-S(9): 523 (2020) - [j38]Yuanyuan Fu, Zhougui Ling, Hamid R. Arabnia, Youping Deng:
Current trend and development in bioinformatics research. BMC Bioinform. 21-S(9): 538 (2020) - [j37]Bjarne Bartlett, Yong Zhu, Mark Menor, Vedbar S. Khadka, Jicai Zhang, Jie Zheng, Bin Jiang, Youping Deng:
Development of a RNA-Seq based prognostic signature for colon cancer. Int. J. Comput. Biol. Drug Des. 13(5/6): 488-503 (2020) - [j36]Xiaoli Chen, Yong Zhu, Mayumi Jijiwa, Masaki Nasu, Junmei Ai, Shengming Dai, Bin Jiang, Jicai Zhang, Gang Huang, Youping Deng:
Identification of plasma lipid species as promising diagnostic markers for prostate cancer. BMC Medical Informatics Decis. Mak. 20-S(9): 223 (2020)
2010 – 2019
- 2018
- [j35]Mengjie Guo, Sicheng Lu, Hongming Huang, Yaohui Wang, Mary Qu Yang, Ye Yang, Zhimin Fan, Bin Jiang, Youping Deng:
Increased AURKA promotes cell proliferation and predicts poor prognosis in bladder cancer. BMC Syst. Biol. 12(7): 11-17 (2018) - [j34]Ling Hu, Rong Zhang, Qiong Yuan, Yinping Gao, Mary Qu Yang, Chunxiang Zhang, Jiankun Huang, Yufei Sun, William Yang, Jack Y. Yang, Zhen-li Min, Jing Cheng, Youping Deng, Xiamin Hu:
The emerging role of microRNA-4487/6845-3p in Alzheimer's disease pathologies is induced by Aβ25-35 triggered in SH-SY5Y cell. BMC Syst. Biol. 12(7): 119:1-119:10 (2018) - [j33]Jeffrey Mitchel, Laszlo Prokai, Youping Deng, Fan Zhang, Robert Barber:
Risk-associated and pathway-based method to detect association with Alzheimer's disease. Int. J. Comput. Biol. Drug Des. 11(1/2): 154-170 (2018) - 2017
- [c21]Naureen Aslam Khattak, Sheikh Arslan Sehgal, Yongsheng Bai, Youping Deng:
Structure Modeling and Molecular Docking Studies of Schizophrenia Candidate Genes, Synapsins 2 (SYN2) and Trace Amino Acid Receptor (TAAR6). ISBRA 2017: 291-301 - 2014
- [j32]Daogang Guan, Jiaofang Shao, Youping Deng, Panwen Wang, Zhongying Zhao, Yan Liang, Junwen Wang, Bin Yan:
CMGRN: a web server for constructing multilevel gene regulatory networks using ChIP-seq and gene expression data. Bioinform. 30(8): 1190-1192 (2014) - [j31]Jack Y. Yang, A. Keith Dunker, Jun S. Liu, Xiang Qin, Hamid R. Arabnia, William Yang, Andrzej Niemierko, Zhongxue Chen, Zuojie Luo, Liangjiang Wang, Yunlong Liu, Dong Xu, Youping Deng, Weida Tong, Mary Qu Yang:
Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms. BMC Bioinform. 15(S-17): I1 (2014) - [j30]William Yang, Kenji Yoshigoe, Xiang Qin, Jun S. Liu, Jack Y. Yang, Andrzej Niemierko, Youping Deng, Yunlong Liu, A. Keith Dunker, Zhongxue Chen, Liangjiang Wang, Dong Xu, Hamid R. Arabnia, Weida Tong, Mary Qu Yang:
Identification of genes and pathways involved in kidney renal clear cell carcinoma. BMC Bioinform. 15(S-17): S2 (2014) - [j29]Chang Liu, Lili Lu, Quan Kong, Yan Li, Haihua Wu, William Yang, Shandan Xu, Xinyu Yang, Xiaolei Song, Jack Y. Yang, Mary Qu Yang, Youping Deng:
Developing discriminate model and comparative analysis of differentially expressed genes and pathways for bloodstream samples of diabetes mellitus type 2. BMC Bioinform. 15(S-17): S5 (2014) - [j28]Daogang Guan, Jiaofang Shao, Zhongying Zhao, Panwen Wang, Jing Qin, Youping Deng, Kenneth R. Boheler, Junwen Wang, Bin Yan:
PTHGRN: unraveling post-translational hierarchical gene regulatory networks using PPI, ChIP-seq and gene expression data. Nucleic Acids Res. 42(Webserver-Issue): 130-136 (2014) - 2012
- [j27]Chao-Yang Pang, Gang Jiang, Shipeng Wang, Ben-Qiong Hu, Qingzhong Liu, Youping Deng, Xudong Huang:
Gene order computation using Alzheimer's DNA microarray gene expression data and the ant colony optimisation algorithm. Int. J. Data Min. Bioinform. 6(6): 617-632 (2012) - [c20]William S. Ford, Jin-Woo Park, Aaron S. Campbell, Youping Deng, Yan Li, Walker H. Land Jr.:
Classifying Lung Cancer Recurrence Time Using Novel Ensemble Method with Gene Network based Input Models. Complex Adaptive Systems 2012: 444-449 - [c19]J. David Schaffer, Jin-Woo Park, Erin Barnes, Qiyi Lu, Xingye Qiao, Youping Deng, Yan Li, Walker H. Land Jr.:
GRNN Ensemble Classifier for Lung Cancer Prognosis Using Only Demographic and TNM features. Complex Adaptive Systems 2012: 450-455 - 2011
- [j26]Ke Zhang, Haiyan Wang, Arne C. Bathke, Solomon W. Harrar, Hans-Peter Piepho, Youping Deng:
Gene set analysis for longitudinal gene expression data. BMC Bioinform. 12: 273 (2011) - [j25]Ke Zhang, Yunlong Liu, Jack Y. Yang, Hamid R. Arabnia, Andrzej Niemierko, Arif Ghafoor, Weizhong Li, Youping Deng:
From genes to networks: in systematic points of view. BMC Syst. Biol. 5(S-3): I1 (2011) - [j24]Zhongxue Chen, Jianzhong Liu, Hon Ng, Saralees Nadarajah, Howard L. Kaufman, Jack Y. Yang, Youping Deng:
Statistical methods on detecting differentially expressed genes for RNA-seq data. BMC Syst. Biol. 5(S-3): S1 (2011) - [j23]Feng Xu, Chen Zhao, Yuhua Li, Jiang Li, Youping Deng, Tieliu Shi:
Exploring virus relationships based on virus-host protein-protein interaction network. BMC Syst. Biol. 5(S-3): S11 (2011) - [j22]Walker H. Land Jr., Xingye Qiao, Daniel Margolis, William S. Ford, Christopher T. Paquette, Joseph F. Perez-Rogers, Jeffrey A. Borgia, Jack Y. Yang, Youping Deng:
Kernelized partial least squares for feature reduction and classification of gene microarray data. BMC Syst. Biol. 5(S-3): S13 (2011) - [j21]Xi Wu, Peng Li, Nan Wang, Ping Gong, Edward J. Perkins, Youping Deng, Chaoyang Zhang:
State Space Model with hidden variables for reconstruction of gene regulatory networks. BMC Syst. Biol. 5(S-3): S3 (2011) - [j20]Jun Liu, Jianxun Chen, Xiaoming Liu, Lei Chun, Jinshan Tang, Youping Deng:
Mass segmentation using a combined method for cancer detection. BMC Syst. Biol. 5(S-3): S6 (2011) - [j19]Jigang Wang, Xiaojie Qiu, Yuhua Li, Youping Deng, Tieliu Shi:
A transcriptional dynamic network during Arabidopsis thaliana pollen development. BMC Syst. Biol. 5(S-3): S8 (2011) - 2010
- [j18]Youping Deng, David R. Johnson, Xin Guan, Choo-Yaw Ang, Junmei Ai, Edward J. Perkins:
In vitro gene regulatory networks predict in vivo function of liver. BMC Syst. Biol. 4: 153 (2010) - [j17]Xiaolong Zhang, Ting Wang, Huiping Luo, Jack Y. Yang, Youping Deng, Jinshan Tang, Mary Qu Yang:
3D Protein structure prediction with genetic tabu search algorithm. BMC Syst. Biol. 4(S-1): S6 (2010) - [j16]Vijender Chaitankar, Preetam Ghosh, Edward J. Perkins, Ping Gong, Youping Deng, Chaoyang Zhang:
A novel gene network inference algorithm using predictive minimum description length approach. BMC Syst. Biol. 4(S-1): S7 (2010) - [j15]Zhengjun Fan, Yuan Gao, Zehao Jia, Youping Deng, Dequan Chen:
Effects of cooling cornea by Low-Temperature Saline Washing on postoperative pain in Photorefractive Keratectomy. Int. J. Funct. Informatics Pers. Medicine 3(3): 228-235 (2010)
2000 – 2009
- 2009
- [c18]Alexander Pozhikov, Mehdi Pirooznia, Rachel Ryan, Chaoyang Zhang, Ping Gong, Edward J. Perkins, Youping Deng, Marius Brouwer:
Generation and Analysis of Expressed Sequence Tags from the Sheepshead Minnow (Cyprinodon Variegatus). BIOCOMP 2009: 174-180 - [c17]Mehdi Pirooznia, Douglas Crawford, Jeffrey Vanwye, Russell Gibson, Chaoyang Zhang, Youping Deng, Timothy McLean:
Genomic Resources for Karenia brevis. BIOCOMP 2009: 228-234 - [c16]Jinghe Mao, Ming Shenwu, Marketta Blue, Manuel Ong, Mary Roth, Ruth Welti, Youping Deng:
Plasma Lipidomic Profiling Reveals the Potential Biomarkers in Type 2 Diabetic Patients. BIOCOMP 2009: 774-779 - [c15]Vijender Chaitankar, Chaoyang Zhang, Preetam Ghosh, Edward J. Perkins, Ping Gong, Youping Deng:
Gene Regulatory Network Inference Using Predictive Minimum Description Length Principle and Conditional Mutual Information. IJCBS 2009: 487-490 - 2008
- [j14]Mehdi Pirooznia, Tanwir Habib, Edward J. Perkins, Youping Deng:
GOfetcher: a database with complex searching facility for gene ontology. Bioinform. 24(21): 2561-2563 (2008) - [j13]Arun Rawat, Georg J. Seifert, Youping Deng:
Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data. BMC Bioinform. 9(S-9) (2008) - [c14]Peng Li, Chaoyang Zhang, Edward J. Perkins, Ping Gong, Youping Deng:
Inferring Gene Regulatory Network of Yeast Cell-Cycle using Dynamic Bayesian Network. BIOCOMP 2008: 801-805 - [c13]Mehdi Pirooznia, Ping Gong, Chaoyang Zhang, Edward J. Perkins, Youping Deng:
Creating a Workflow for Expressed Sequence Tags Analysis. BIOCOMP 2008: 806-808 - [c12]Ping Gong, Mehdi Pirooznia, Xin Guan, J. Cristobal Vera, Chun Liang, Youping Deng, Chaoyang Zhang, Edward J. Perkins:
A Strategy for High Throughput Microarray Oligo Probe Design Using 454 and Sanger Sequencing Data of Eisenia fetida Expressed Sequence Tags. BIOCOMP 2008: 1040-1043 - 2007
- [j12]Peng Li, Chaoyang Zhang, Edward J. Perkins, Ping Gong, Youping Deng:
Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks. BMC Bioinform. 8(S-7) (2007) - [j11]Mehdi Pirooznia, Ping Gong, Xin Guan, Laura S. Inouye, Kuan Yang, Edward J. Perkins, Youping Deng:
Cloning, analysis and functional annotation of expressed sequence tags from the Earthworm Eisenia fetida. BMC Bioinform. 8(S-7) (2007) - [c11]Mehdi Pirooznia, Youping Deng:
Efficiency of Hybrid Normalization of Microarray Gene Expression: A Simulation Study. AINA Workshops (1) 2007: 739-744 - [c10]Mehdi Pirooznia, Arun Rawat, Jack Y. Yang, Mary Qu Yang, Ping Gong, Edward J. Perkins, Youping Deng:
An Effective Interwoven Loop Design Application for Two-Channel Microarray Experiments. BIBE 2007: 187-191 - [c9]Jack Y. Yang, Andrzej Niemierko, Mary Qu Yang, Youping Deng:
Non-Monotonic Radio-Sensitivity over Tumor Volumes on Adjuvant Radio Therapy A New Insight on Cell Killing and Modeling. BIBE 2007: 524-531 - [c8]Chaoyang Zhang, Surender Dargan, Hong Lan, Youping Deng:
Web-Based Information Retrieval with Local and Global Link Analyis. IKE 2007: 117-123 - [c7]Arun Rajendran, Peng Li, Chaoyang Zhang, Youping Deng:
Parallel Training of Multi-class Support Vector Machines Using Sequential Minimal Optimization. MLMTA 2007: 31-37 - 2006
- [j10]Vijayaraj Nagarajan, Navodit Kaushik, Beddhu Murali, Chaoyang Zhang, Sanyogita Lakhera, Mohamed O. Elasri, Youping Deng:
A Fourier Transformation based Method to Mine Peptide Space for Antimicrobial Activity. BMC Bioinform. 7(S-2) (2006) - [j9]Venkata Thodima, Mehdi Pirooznia, Youping Deng:
RiboaptDB: A Comprehensive Database of Ribozymes and Aptamers. BMC Bioinform. 7(S-2) (2006) - [j8]Youping Deng, Jun Ni, Chaoyang Zhang:
Development of computations in bioscience and bioinformatics and its application: review of the Symposium of Computations in Bioinformatics and Bioscience (SCBB06). BMC Bioinform. 7(S-4) (2006) - [j7]Mehdi Pirooznia, Youping Deng:
SVM Classifier - a comprehensive java interface for support vector machine classification of microarray data. BMC Bioinform. 7(S-4) (2006) - [j6]Kuan Yang, Youping Deng, Chaoyang Zhang, Mohamed O. Elasri:
Identification of new members of hydrophobin family using primary structure analysis. BMC Bioinform. 7(S-4) (2006) - [j5]Chaoyang Zhang, Peng Li, Arun Rajendran, Youping Deng, Dequan Chen:
Parallelization of multicategory support vector machines (PMC-SVM) for classifying microarray data. BMC Bioinform. 7(S-4) (2006) - [c6]Youping Deng, Yinghua Dong, Susan J. Brown, Chaoyang Zhang:
An Integrated Web-Based Model for Management, Analysis and Retrieval of EST Biological Information. APWeb Workshops 2006: 931-938 - [c5]Chaoyang Zhang, Peng Li, Arun Rajendran, Youping Deng:
Parallel Multicategory Support Vector Machines (PMC-SVM) for Classifying Microcarray Data. IMSCCS (1) 2006: 110-115 - [c4]Kuan Yang, Youping Deng, Chaoyang Zhang, Mohamed O. Elasri:
Identification of New Members of Hydrophobin Family Using Primary Structure Analysis. IMSCCS (1) 2006: 116-122 - 2005
- [j4]Judong Shen, Shing I. Chang, E. Stanley Lee, Youping Deng, Susan J. Brown:
Determination of cluster number in clustering microarray data. Appl. Math. Comput. 169(2): 1172-1185 (2005) - [c3]Youping Deng, Venkatachalam Chokalingam, Chaoyang Zhang:
Markov Chain Correlation Based Clustering of Gene Expression Data. ITCC (2) 2005: 750-755 - [c2]Navodit Kaushik, Chaoyang Zhang, Beddhu Murali, Vijayaraj Nagarajan, Sanyogita Lakhera, Youping Deng:
Parallel Virtual Screening for Prediction of Antimicrobial Activity Using Fourier Transforms. PDPTA 2005: 1355- - 2004
- [j3]Qingsong Zhu, Youping Deng, Phaneendra Vanka, Susan J. Brown, Subbaratnam Muthukrishnan, Karl J. Kramer:
Computational identification of novel chitinase-like proteins in the Drosophila melanogaster genome. Bioinform. 20(2): 161-169 (2004) - [j2]Hongying Jiang, Youping Deng, Huann-Sheng Chen, Lin Tao, Qiuying Sha, Jun Chen, Chung-Jui Tsai, Shuanglin Zhang:
Joint analysis of two microarray gene-expression data sets to select lung adenocarcinoma marker genes. BMC Bioinform. 5: 81 (2004) - [j1]Yi Lu, Shiyong Lu, Farshad Fotouhi, Youping Deng, Susan J. Brown:
Incremental genetic K-means algorithm and its application in gene expression data analysis. BMC Bioinform. 5: 172 (2004) - [c1]Yi Lu, Shiyong Lu, Farshad Fotouhi, Youping Deng, Susan J. Brown:
FGKA: a Fast Genetic K-means Clustering Algorithm. SAC 2004: 622-623
Coauthor Index
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last updated on 2024-10-07 22:19 CEST by the dblp team
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