@article{DBLP:journals/bmcbi/ChenNLZL23,
author = {Jiaxing Chen and
Yen Kaow Ng and
Lu Lin and
Xianglilan Zhang and
Shuaicheng Li},
title = {On triangle inequalities of correlation-based distances for gene expression
profiles},
journal = {{BMC} Bioinform.},
volume = {24},
number = {1},
pages = {40},
year = {2023},
url = {https://doi.org/10.1186/s12859-023-05161-y},
doi = {10.1186/S12859-023-05161-Y},
timestamp = {Thu, 08 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenNLZL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenNLZL22,
author = {Jiaxing Chen and
Yen Kaow Ng and
Lu Lin and
Xianglilan Zhang and
Shuaicheng Li},
title = {Correction: On triangle inequalities of correlation-based distances
for gene expression profiles},
journal = {{BMC} Bioinform.},
volume = {23-S},
number = {3},
pages = {571},
year = {2022},
url = {https://doi.org/10.1186/s12859-023-05358-1},
doi = {10.1186/S12859-023-05358-1},
timestamp = {Mon, 05 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenNLZL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcgenomics/ZhangLLNL19,
author = {Yanlin Zhang and
Weiwei Liu and
Yu Lin and
Yen Kaow Ng and
Shuaicheng Li},
title = {Large-scale 3D chromatin reconstruction from chromosomal contacts},
journal = {{BMC} Genom.},
volume = {20},
number = {{S2}},
year = {2019},
url = {https://doi.org/10.1186/s12864-019-5470-2},
doi = {10.1186/S12864-019-5470-2},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcgenomics/ZhangLLNL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/WeiZLN18,
author = {Joshua Chan Mun Wei and
Zicheng Zhao and
Shuai Cheng Li and
Yen Kaow Ng},
title = {NGS-based likelihood ratio for identifying contributors in two- and
three-person {DNA} mixtures},
journal = {Comput. Biol. Chem.},
volume = {74},
pages = {428--433},
year = {2018},
url = {https://doi.org/10.1016/j.compbiolchem.2018.03.010},
doi = {10.1016/J.COMPBIOLCHEM.2018.03.010},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/candc/WeiZLN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwoca/NgJL18,
author = {Yen Kaow Ng and
Wenlong Jia and
Shuai Cheng Li},
editor = {Costas S. Iliopoulos and
Hon Wai Leong and
Wing{-}Kin Sung},
title = {Placing Segments on Parallel Arcs},
booktitle = {Combinatorial Algorithms - 29th International Workshop, {IWOCA} 2018,
Singapore, July 16-19, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10979},
pages = {298--310},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-94667-2\_25},
doi = {10.1007/978-3-319-94667-2\_25},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iwoca/NgJL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/ZhaoNFL16,
author = {Zicheng Zhao and
Yen Kaow Ng and
Xiaodong Fang and
Shuaicheng Li},
editor = {Tianhai Tian and
Qinghua Jiang and
Yunlong Liu and
Kevin Burrage and
Jiangning Song and
Yadong Wang and
Xiaohua Hu and
Shinichi Morishita and
Qian Zhu and
Guohua Wang},
title = {Eliminating heterozygosity from reads through coverage normalization},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2016, Shenzhen, China, December 15-18, 2016},
pages = {174--177},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/BIBM.2016.7822514},
doi = {10.1109/BIBM.2016.7822514},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/ZhaoNFL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NgYOL15,
author = {Yen Kaow Ng and
Linzhi Yin and
Hirotaka Ono and
Shuai Cheng Li},
title = {Finding All Longest Common Segments in Protein Structures Efficiently},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {12},
number = {3},
pages = {644--655},
year = {2015},
url = {https://doi.org/10.1109/TCBB.2014.2372782},
doi = {10.1109/TCBB.2014.2372782},
timestamp = {Fri, 29 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/NgYOL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/ZhangNL15,
author = {Lu Zhang and
Yen Kaow Ng and
Shuaicheng Li},
editor = {Jun Huan and
Satoru Miyano and
Amarda Shehu and
Xiaohua Tony Hu and
Bin Ma and
Sanguthevar Rajasekaran and
Vijay K. Gombar and
Matthieu{-}P. Schapranow and
Illhoi Yoo and
Jiayu Zhou and
Brian Chen and
Vinay Pai and
Brian G. Pierce},
title = {Reconstructing directed gene regulatory network by only gene expression
data},
booktitle = {2015 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2015, Washington, DC, USA, November 9-12, 2015},
pages = {163--170},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/BIBM.2015.7359675},
doi = {10.1109/BIBM.2015.7359675},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/ZhangNL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/LiNLL15,
author = {Jin Li and
Yen Kaow Ng and
Xingwu Liu and
Shuai Cheng Li},
editor = {Robert W. Harrison and
Yaohang Li and
Ion I. Mandoiu},
title = {On the Near-Linear Correlation of the Eigenvalues Across {BLOSUM}
Matrices},
booktitle = {Bioinformatics Research and Applications - 11th International Symposium,
{ISBRA} 2015, Norfolk, VA, USA, June 7-10, 2015 Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9096},
pages = {199--210},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-19048-8\_17},
doi = {10.1007/978-3-319-19048-8\_17},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/isbra/LiNLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/NgOGL12,
author = {Yen Kaow Ng and
Hirotaka Ono and
Ling Ge and
Shuai Cheng Li},
editor = {Juha K{\"{a}}rkk{\"{a}}inen and
Jens Stoye},
title = {Finding Longest Common Segments in Protein Structures in Nearly Linear
Time},
booktitle = {Combinatorial Pattern Matching - 23rd Annual Symposium, {CPM} 2012,
Helsinki, Finland, July 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7354},
pages = {334--348},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-31265-6\_27},
doi = {10.1007/978-3-642-31265-6\_27},
timestamp = {Fri, 29 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cpm/NgOGL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icwca/LowNT12,
author = {Soon Aik Low and
Yen Kaow Ng and
Hung{-}Khoon Tan},
title = {An automatic verifier for the feasibility of special cases of the
offline dynamic storage allocation problem},
booktitle = {{IET} International Conference on Wireless Communications and Applications,
{ICWCA} 2012, Kuala Lumpur, Malaysia, October 8-10, 2012},
pages = {1--4},
publisher = {{IEEE}},
year = {2012},
url = {https://doi.org/10.1049/cp.2012.2104},
doi = {10.1049/CP.2012.2104},
timestamp = {Wed, 16 Oct 2019 14:14:49 +0200},
biburl = {https://dblp.org/rec/conf/icwca/LowNT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/LiN11,
author = {Shuai Cheng Li and
Yen Kaow Ng},
title = {On protein structure alignment under distance constraint},
journal = {Theor. Comput. Sci.},
volume = {412},
number = {32},
pages = {4187--4199},
year = {2011},
url = {https://doi.org/10.1016/j.tcs.2010.11.045},
doi = {10.1016/J.TCS.2010.11.045},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/LiN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/ZhangNWZ11,
author = {Louxin Zhang and
Yen Kaow Ng and
Taoyang Wu and
Yu Zheng},
editor = {Ion I. Mandoiu and
Satoru Miyano and
Teresa M. Przytycka and
Sanguthevar Rajasekaran},
title = {Network model and efficient method for detecting relative duplications
or horizontal gene transfers},
booktitle = {{IEEE} 1st International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2011, Orlando, FL, USA, February 3-5,
2011},
pages = {214--219},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/ICCABS.2011.5729883},
doi = {10.1109/ICCABS.2011.5729883},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccabs/ZhangNWZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiN10,
author = {Shuai Cheng Li and
Yen Kaow Ng},
title = {Calibur: a tool for clustering large numbers of protein decoys},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {25},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-25},
doi = {10.1186/1471-2105-11-25},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isaac/LiN09,
author = {Shuai Cheng Li and
Yen Kaow Ng},
editor = {Yingfei Dong and
Ding{-}Zhu Du and
Oscar H. Ibarra},
title = {On Protein Structure Alignment under Distance Constraint},
booktitle = {Algorithms and Computation, 20th International Symposium, {ISAAC}
2009, Honolulu, Hawaii, USA, December 16-18, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5878},
pages = {65--76},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-10631-6\_9},
doi = {10.1007/978-3-642-10631-6\_9},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/isaac/LiN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/algorithms/LiNZ08,
author = {Shuai Cheng Li and
Yen Kaow Ng and
Louxin Zhang},
title = {A {PTAS} For The \emph{k}-Consensus Structures Problem Under Squared
Euclidean Distance},
journal = {Algorithms},
volume = {1},
number = {2},
pages = {43--51},
year = {2008},
url = {https://doi.org/10.3390/a1020043},
doi = {10.3390/A1020043},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/algorithms/LiNZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/NgS08,
author = {Yen Kaow Ng and
Takeshi Shinohara},
title = {Developments from enquiries into the learnability of the pattern languages
from positive data},
journal = {Theor. Comput. Sci.},
volume = {397},
number = {1-3},
pages = {150--165},
year = {2008},
url = {https://doi.org/10.1016/j.tcs.2008.02.028},
doi = {10.1016/J.TCS.2008.02.028},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/NgS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dna/KawashimoNOSY08,
author = {Suguru Kawashimo and
Yen Kaow Ng and
Hirotaka Ono and
Kunihiko Sadakane and
Masafumi Yamashita},
editor = {Ashish Goel and
Friedrich C. Simmel and
Petr Sos{\'{\i}}k},
title = {Speeding Up Local-Search Type Algorithms for Designing {DNA} Sequences
under Thermodynamical Constraints},
booktitle = {{DNA} Computing, 14th International Meeting on {DNA} Computing, {DNA}
14, Prague, Czech Republic, June 2-9, 2008. Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {5347},
pages = {168--178},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-642-03076-5\_14},
doi = {10.1007/978-3-642-03076-5\_14},
timestamp = {Fri, 29 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/dna/KawashimoNOSY08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/faw/LiNZ08,
author = {Shuai Cheng Li and
Yen Kaow Ng and
Louxin Zhang},
editor = {Franco P. Preparata and
Xiaodong Wu and
Jianping Yin},
title = {A {PTAS} for the k-Consensus Structures Problem Under Euclidean Squared
Distance},
booktitle = {Frontiers in Algorithmics, Second Annual International Workshop, {FAW}
2008, Changsha, China, June 19-21, 2008, Proceeedings},
series = {Lecture Notes in Computer Science},
volume = {5059},
pages = {35--44},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-69311-6\_7},
doi = {10.1007/978-3-540-69311-6\_7},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/faw/LiNZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcss/JainNT07,
author = {Sanjay Jain and
Yen Kaow Ng and
Tiong Seng Tay},
title = {Learning languages in a union},
journal = {J. Comput. Syst. Sci.},
volume = {73},
number = {1},
pages = {89--108},
year = {2007},
url = {https://doi.org/10.1016/j.jcss.2006.01.005},
doi = {10.1016/J.JCSS.2006.01.005},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcss/JainNT07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icgi/NgS06,
author = {Yen Kaow Ng and
Takeshi Shinohara},
editor = {Yasubumi Sakakibara and
Satoshi Kobayashi and
Kengo Sato and
Tetsuro Nishino and
Etsuji Tomita},
title = {Characteristic Sets for Inferring the Unions of the Tree Pattern Languages
by the Most Fitting Hypotheses},
booktitle = {Grammatical Inference: Algorithms and Applications, 8th International
Colloquium, {ICGI} 2006, Tokyo, Japan, September 20-22, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4201},
pages = {307--319},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11872436\_25},
doi = {10.1007/11872436\_25},
timestamp = {Tue, 14 May 2019 10:00:52 +0200},
biburl = {https://dblp.org/rec/conf/icgi/NgS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pakdd/NgS06,
author = {Yen Kaow Ng and
Takeshi Shinohara},
editor = {Wee Keong Ng and
Masaru Kitsuregawa and
Jianzhong Li and
Kuiyu Chang},
title = {Finding Consensus Patterns in Very Scarce Biosequence Samples from
Their Minimal Multiple Generalizations},
booktitle = {Advances in Knowledge Discovery and Data Mining, 10th Pacific-Asia
Conference, {PAKDD} 2006, Singapore, April 9-12, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3918},
pages = {540--545},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11731139\_63},
doi = {10.1007/11731139\_63},
timestamp = {Tue, 14 May 2019 10:00:51 +0200},
biburl = {https://dblp.org/rec/conf/pakdd/NgS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alt/NgS05,
author = {Yen Kaow Ng and
Takeshi Shinohara},
editor = {Sanjay Jain and
Hans Ulrich Simon and
Etsuji Tomita},
title = {Inferring Unions of the Pattern Languages by the Most Fitting Covers},
booktitle = {Algorithmic Learning Theory, 16th International Conference, {ALT}
2005, Singapore, October 8-11, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3734},
pages = {269--282},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11564089\_22},
doi = {10.1007/11564089\_22},
timestamp = {Fri, 08 Sep 2023 21:18:15 +0200},
biburl = {https://dblp.org/rec/conf/alt/NgS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cocoon/OnoN05,
author = {Hirotaka Ono and
Yen Kaow Ng},
editor = {Lusheng Wang},
title = {Best Fitting Fixed-Length Substring Patterns for a Set of Strings},
booktitle = {Computing and Combinatorics, 11th Annual International Conference,
{COCOON} 2005, Kunming, China, August 16-29, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3595},
pages = {240--250},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11533719\_26},
doi = {10.1007/11533719\_26},
timestamp = {Fri, 29 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cocoon/OnoN05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dis/NgOS05,
author = {Yen Kaow Ng and
Hirotaka Ono and
Takeshi Shinohara},
editor = {Achim G. Hoffmann and
Hiroshi Motoda and
Tobias Scheffer},
title = {Measuring Over-Generalization in the Minimal Multiple Generalizations
of Biosequences},
booktitle = {Discovery Science, 8th International Conference, {DS} 2005, Singapore,
October 8-11, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3735},
pages = {176--188},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11563983\_16},
doi = {10.1007/11563983\_16},
timestamp = {Fri, 29 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/dis/NgOS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alt/JainNT01,
author = {Sanjay Jain and
Yen Kaow Ng and
Tiong Seng Tay},
editor = {Naoki Abe and
Roni Khardon and
Thomas Zeugmann},
title = {Learning Languages in a Union},
booktitle = {Algorithmic Learning Theory, 12th International Conference, {ALT}
2001, Washington, DC, USA, November 25-28, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2225},
pages = {235--250},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-45583-3\_19},
doi = {10.1007/3-540-45583-3\_19},
timestamp = {Tue, 14 May 2019 10:00:51 +0200},
biburl = {https://dblp.org/rec/conf/alt/JainNT01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
