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2020 – today
- 2021
[b1]Delphine Ropers:
Modelling biochemical reaction networks in bacteria - From data to models and back. (Modélisation de réseaux biochimiques bactériens - Un aller-retour entre données et modèles). Claude Bernard University Lyon 1, France, 2021
2010 – 2019
- 2018
- [j12]Stefano Casagranda
, Suzanne Touzeau, Delphine Ropers, Jean-Luc Gouzé:
Principal process analysis of biological models. BMC Syst. Biol. 12(1): 68:1-68:26 (2018) - [j11]Andreas Kremling, Johannes Geiselmann, Delphine Ropers, Hidde de Jong:
An ensemble of mathematical models showing diauxic growth behaviour. BMC Syst. Biol. 12(1): 82:1-82:16 (2018) - 2017
- [j10]Eugenio Cinquemani, Valérie Laroute, Muriel Cocaign-Bousquet, Hidde de Jong, Delphine Ropers:
Estimation of time-varying growth, uptake and excretion rates from dynamic metabolomics data. Bioinform. 33(14): i301-i310 (2017) - 2015
- [j9]Valentin Zulkower, Michel Page, Delphine Ropers, Johannes Geiselmann, Hidde de Jong:
Robust reconstruction of gene expression profiles from reporter gene data using linear inversion. Bioinform. 31(12): 71-79 (2015) - [c9]Stefano Casagranda, Delphine Ropers, Jean-Luc Gouzé:
Model reduction and process analysis of biological models. MED 2015: 1132-1139 - 2014
- [c8]Ismail Belgacem, Edith Grac, Delphine Ropers, Jean-Luc Gouzé:
Stability analysis of a reduced transcription-translation model of RNA polymerase. CDC 2014: 3924-3929 - 2011
- [j8]Delphine Ropers, Valentina Baldazzi, Hidde de Jong:
Model Reduction Using Piecewise-Linear Approximations Preserves Dynamic Properties of the Carbon Starvation Response in Escherichia coli. IEEE ACM Trans. Comput. Biol. Bioinform. 8(1): 166-181 (2011) - 2010
- [j7]Frédéric Boyer, Bruno Besson, Guillaume Baptist, Jérôme Izard, Corinne Pinel, Delphine Ropers, Johannes Geiselmann, Hidde de Jong:
WellReader: a MATLAB program for the analysis of fluorescence and luminescence reporter gene data. Bioinform. 26(9): 1262-1263 (2010) - [j6]Hidde de Jong, Caroline Ranquet, Delphine Ropers, Corinne Pinel, Johannes Geiselmann:
Experimental and computational validation of models of fluorescent and luminescent reporter genes in bacteria. BMC Syst. Biol. 4: 55 (2010) - [j5]Valentina Baldazzi, Delphine Ropers, Yves Markowicz, Daniel Kahn, Johannes Geiselmann, Hidde de Jong:
The Carbon Assimilation Network in Escherichia coli Is Densely Connected and Largely Sign-Determined by Directions of Metabolic Fluxes. PLoS Comput. Biol. 6(6) (2010) - [c7]Pedro T. Monteiro, Ana T. Freitas, Delphine Ropers, Radu Mateescu, Hidde de Jong:
Modeling and formal verification of biological regulatory networks: An integrative approach. BIBM Workshops 2010: 812-813
2000 – 2009
- 2009
- [j4]Fabien Corblin, Sébastien Tripodi, Eric Fanchon, Delphine Ropers, Laurent Trilling:
A declarative constraint-based method for analyzing discrete genetic regulatory networks. Biosyst. 98(2): 91-104 (2009) - 2008
- [c6]Pedro T. Monteiro, Delphine Ropers, Radu Mateescu, Ana T. Freitas, Hidde de Jong:
Temporal Logic Patterns for Querying Qualitative Models of Genetic Regulatory Networks. ECAI 2008: 229-233 - [c5]Pedro T. Monteiro, Delphine Ropers, Radu Mateescu, Ana T. Freitas, Hidde de Jong:
Temporal logic patterns for querying dynamic models of cellular interaction networks. ECCB 2008: 227-233 - 2007
- [j3]Grégory Batt, Hidde de Jong, Johannes Geiselmann, Jean-Luc Gouzé, Michel Page, Delphine Ropers, Sari Tewfik, Dominique Schneider:
Analyse qualitative de la dynamique de réseaux de régulation génique par des modèles linéaires par morceaux. Tech. Sci. Informatiques 26(1-2): 11-45 (2007) - 2006
- [j2]Hidde de Jong, Delphine Ropers:
Strategies for dealing with incomplete information in the modeling of molecular interaction networks. Briefings Bioinform. 7(4): 354-363 (2006) - 2005
- [c4]Grégory Batt, Delphine Ropers, Hidde de Jong, Johannes Geiselmann, Michel Page, Dominique Schneider:
Qualitative Analysis and Verification of Hybrid Models of Genetic Regulatory Networks: Nutritional Stress Response in. HSCC 2005: 134-150 - [c3]Grégory Batt, Delphine Ropers, Hidde de Jong, Johannes Geiselmann, Radu Mateescu, Michel Page, Dominique Schneider:
Analysis and Verification of Qualitative Models of Genetic Regulatory Networks: A Model-Checking Approach. IJCAI 2005: 370-375 - [c2]Grégory Batt, Delphine Ropers, Hidde de Jong, Johannes Geiselmann, Radu Mateescu, Michel Page, Dominique Schneider:
Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli. ISMB (Supplement of Bioinformatics) 2005: 19-28 - 2004
- [j1]Damien Eveillard, Delphine Ropers, Hidde de Jong, Christiane Branlant, Alexander Bockmayr:
A multi-scale constraint programming model of alternative splicing regulation. Theor. Comput. Sci. 325(1): 3-24 (2004) - 2003
- [c1]Damien Eveillard, Delphine Ropers, Hidde de Jong, Christiane Branlant, Alexander Bockmayr:
Multiscale Modeling of Alternative Splicing Regulation. CMSB 2003: 75-87
Coauthor Index
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