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ORCIDKavishwar B. Wagholikar
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- affiliation: Mayo Clinic, Rochester, Division of Biomedical Statistics and Informatics
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2020 – today
- 2022
[j27]Kavishwar B. Wagholikar
, Layne Ainsworth, David Zelle, Kira Chaney, Michael Mendis, Jeffrey G. Klann, Alexander J. Blood, Angela Miller, Rupendra Chulyadyo, Michael Oates, William J. Gordon, Samuel J. Aronson, Benjamin M. Scirica, Shawn N. Murphy:
I2b2-etl: Python application for importing electronic health data into the informatics for integrating biology and the bedside platform. Bioinform. 38(20): 4833-4836 (2022)- [j26]Hossein Estiri, Zachary H. Strasser, Sina Rashidian, Jeffrey G. Klann, Kavishwar B. Wagholikar, Thomas H. McCoy Jr., Shawn N. Murphy:
An objective framework for evaluating unrecognized bias in medical AI models predicting COVID-19 outcomes. J. Am. Medical Informatics Assoc. 29(8): 1334-1341 (2022) - [j25]Griffin M. Weber, Chuan Hong, Zongqi Xia, Nicolas Paris, Miguel Pedrera-Jiménez, Ashley C. Pfaff, Emily R. Pfaff, Danielle Pillion, Sara Pizzimenti, Hans-Ulrich Prokosch, Robson A. Prudente, Andrea Prunotto, Víctor Quirós-González, Maryna Raskin, Siegbert Rieg, Gustavo Roig-Domínguez, Pablo Rojo, Paula Rubio-Mayo, Paolo Sacchi, Carlos Sáez, Elisa Salamanca, Malarkodi Jebathilagam Samayamuthu, L. Nelson Sanchez-Pinto, Arnaud Sandrin, Nandhini Santhanam, Janaina C. C. Santos, Fernando J. Sanz Vidorreta, Maria Savino, Jürgen Schüttler, Luigia Scudeller, Neil J. Sebire, Pablo Serrano-Balazote, Patricia Serre, Arnaud Serret-Larmande, Mohsin Shah, Zahra Shakeri Hossein Abad, Domenick Silvio, Piotr Sliz, Jiyeon Son, Charles Sonday, Andrew M. South, Francesca Sperotto, Zachary H. Strasser, Bryce W. Q. Tan, Suzana E. Tanni, Deanne M. Taylor, Ana I. Terriza-Torres, Patric Tippmann, Emma M. S. Toh, Yi-Ju Tseng, Andrew K. Vallejos, Gaël Varoquaux, Margaret E. Vella, Guillaume Verdy, Jill-Jênn Vie, Michele Vitacca, Kavishwar B. Wagholikar, Lemuel R. Waitman, Demian Wassermann, Martin Wolkewitz, Scott Wong, Xin Xiong, Ye Ye, Nadir Yehya, William Yuan, Alberto Zambelli, Harrison G. Zhang, Daniela Zöller, Valentina Zuccaro, Chiara Zucco:
International comparisons of laboratory values from the 4CE collaborative to predict COVID-19 mortality. npj Digit. Medicine 5 (2022) - [j24]Harrison G. Zhang, Arianna Dagliati, Zahra Shakeri Hossein Abad, Xin Xiong, Clara-Lea Bonzel, Zongqi Xia, Bryce W. Q. Tan, Paul Avillach, Gabriel A. Brat, Chuan Hong, Michele Morris, Shyam Visweswaran, Lav P. Patel, Alba Gutiérrez-Sacristán, David A. Hanauer, John H. Holmes, Malarkodi Jebathilagam Samayamuthu, Florence T. Bourgeois, Sehi L'Yi, Sarah E. Maidlow, Bertrand Moal, Shawn N. Murphy, Zachary H. Strasser, Antoine Neuraz, Kee Yuan Ngiam, Ne-Hooi Will Loh, Gilbert S. Omenn, Andrea Prunotto, Lauren A. Dalvin, Jeffrey G. Klann, Petra Schubert, Fernando J. Sanz Vidorreta, Vincent Benoit, Guillaume Verdy, Ramakanth Kavuluru, Hossein Estiri, Yuan Luo, Alberto Malovini, Valentina Tibollo, Riccardo Bellazzi, Kelly Cho, Yuk-Lam Ho, Amelia L. M. Tan, Byorn W. L. Tan, Nils Gehlenborg, Sara Lozano-Zahonero, Vianney Jouhet, Luca Chiovato, Bruce J. Aronow, Emma M. S. Toh, Wei Gen Scott Wong, Sara Pizzimenti, Kavishwar B. Wagholikar, Mauro Bucalo, Tianxi Cai, Andrew M. South, Isaac S. Kohane, Griffin M. Weber:
International electronic health record-derived post-acute sequelae profiles of COVID-19 patients. npj Digit. Medicine 5 (2022) - 2021
- [j23]Samuel J. Aronson, Benjamin M. Scirica, William J. Gordon, Alexander J. Blood, Kira Chaney, Eugene Clark, Corey Glynn, Remlee Green, John St. Laurent, Charlotte Mailly, Marian McPartlin, Shawn Murphy, Hunter Nichols, Michael Oates, Samantha Subramaniam, Matthew Varugheese, Kavishwar B. Wagholikar:
Workflow Automation for a Virtual Hypertension Management Program. Appl. Clin. Inform. 12(5): 1041-1048 (2021) - [j22]Jeffrey G. Klann, Hossein Estiri, Griffin M. Weber, Bertrand Moal, Paul Avillach, Chuan Hong, Amelia L. M. Tan, Brett K. Beaulieu-Jones, Victor M. Castro, Thomas Maulhardt, Alon Geva, Alberto Malovini, Andrew M. South, Shyam Visweswaran, Michele Morris, Malarkodi J. Samayamuthu, Gilbert S. Omenn, Kee Yuan Ngiam, Kenneth D. Mandl, Martin Boeker, Karen L. Olson, Danielle L. Mowery, Robert W. Follett, David A. Hanauer, Riccardo Bellazzi, Jason H. Moore, Ne-Hooi Will Loh, Douglas S. Bell, Kavishwar B. Wagholikar, Luca Chiovato, Valentina Tibollo, Siegbert Rieg, Anthony L. L. J. Li, Vianney Jouhet, Emily Schriver, Zongqi Xia, Meghan Hutch, Yuan Luo, Isaac S. Kohane, Gabriel A. Brat, Shawn N. Murphy:
Validation of an internationally derived patient severity phenotype to support COVID-19 analytics from electronic health record data. J. Am. Medical Informatics Assoc. 28(7): 1411-1420 (2021) - [j21]Hossein Estiri, Zachary H. Strasser, Jeffrey G. Klann, Pourandokht Naseri, Kavishwar B. Wagholikar, Shawn N. Murphy:
Predicting COVID-19 mortality with electronic medical records. npj Digit. Medicine 4 (2021) - 2020
- [j20]Kavishwar B. Wagholikar, Hossein Estiri, Marykate Murphy, Shawn N. Murphy:
Polar labeling: silver standard algorithm for training disease classifiers. Bioinform. 36(10): 3200-3206 (2020) - [j19]Hossein Estiri, Zachary H. Strasser, Jeffrey G. Klann, Thomas H. McCoy Jr., Kavishwar B. Wagholikar, Sebastien Vasey, Victor M. Castro, Marykate Murphy, Shawn N. Murphy:
Transitive Sequencing Medical Records for Mining Predictive and Interpretable Temporal Representations. Patterns 1(4): 100051 (2020) - [c34]Shawn N. Murphy, Hossein Estiri, Zachary H. Strasser, Kavishwar B. Wagholikar, Victor M. Castro:
High-throughput Phenotyping with EHR Sequences. AMIA 2020
2010 – 2019
- 2019
- [c33]Jeffrey G. Klann, Nich Wattanasin, Michael Mendis, Matthew A. Joss, Hossein Estiri, Kavishwar B. Wagholikar, Shawn N. Murphy:
Ontologies Enabling Computable Tables. AMIA 2019 - [c32]Kavishwar B. Wagholikar, Samuel J. Aronson, Benjamin Morgan Scirica, Akshay S. Desai, Shawn N. Murphy:
Patient Stratification Process for enabling Clinical Interventions. AMIA 2019 - [c31]Kavishwar B. Wagholikar, Christina M. Fischer, Alyssa P. Goodson, Christopher Herrick, Taylor Maclean, Katelyn Smith, Liliana Fera, Thomas Gaziano, Jacqueline Dunning, Joshua Bosque-Hamilton, Lina Matta, Eloy Toscano, Brent Richter, Layne Ainsworth, Michael Oates, Samuel J. Aronson, Calum A. MacRae, Benjamin Morgan Scirica, Akshay S. Desai, Shawn N. Murphy:
Dynamic Phenotyping to facilitate Accrual for Prospective Clinical studies: A Case Study in Heart Failure. AMIA 2019 - [c30]Kavishwar B. Wagholikar, Vishal Vernekar, Akshay Zagade, Yuri Ostrovsky, Shek-Wayne Chan, Alyssa P. Goodson, Ameet Pathak, Corey Glynn, Christopher Herrick, Shawn N. Murphy:
Stratification of Patient Population for enabling data-driven Clinical Interventions using I2b2. AMIA 2019 - [c29]Akshay Zagade, Vishal Vernekar, Shek-Wayne Chan, Kavishwar B. Wagholikar, Rupendra Chulyadyo, Yuri Ostrovsky, Alyssa P. Goodson, Ameet Pathak, Christopher Herrick, Shawn N. Murphy:
Plugin for importing spreadsheets into Informatics for Integrating Biology and the Bedside platform. AMIA 2019 - 2018
- [j18]K. E. Ravikumar, Kathy L. MacLaughlin, Marianne R. Scheitel, Maya Kessler, Kavishwar B. Wagholikar, Hongfang Liu, Rajeev Chaudhry:
Improving the Accuracy of a Clinical Decision Support System for Cervical Cancer Screening and Surveillance. Appl. Clin. Inform. 09(01): 62-71 (2018) - [j17]Jeffrey G. Klann, Lori C. Phillips, Christopher Herrick, Matthew A. Joss, Kavishwar B. Wagholikar, Shawn N. Murphy:
Web services for data warehouses: OMOP and PCORnet on i2b2. J. Am. Medical Informatics Assoc. 25(10): 1331-1338 (2018) - [j16]Kavishwar B. Wagholikar, Christina M. Fischer, Alyssa P. Goodson, Christopher D. Herrick, Martin Rees, Eloy Toscano, Calum A. MacRae, Benjamin M. Scirica, Akshay S. Desai, Shawn N. Murphy:
Extraction of Ejection Fraction from Echocardiography Notes for Constructing a Cohort of Patients having Heart Failure with reduced Ejection Fraction (HFrEF). J. Medical Syst. 42(11): 209:1-209:12 (2018) - [j15]Kavishwar B. Wagholikar, Pralav P. Dessai, Javier Sanz, Michael Mendis, Douglas S. Bell, Shawn N. Murphy:
Implementation of informatics for integrating biology and the bedside (i2b2) platform as Docker containers. BMC Medical Informatics Decis. Mak. 18(1): 66:1-66:6 (2018) - [c28]Mitchell J. Feldman, Kavishwar B. Wagholikar, Kathleen Famiglietti, Richard J. Kim, Edward P. Hoffer, Henry C. Chueh:
On DXplain vocabulary development: Past and Present. AMIA 2018 - [c27]Tzu-I Yang, Chia-Ching Chou, Kavishwar B. Wagholikar, Mitchell J. Feldman, Henry C. Chueh:
Natural Language Processing to Detect High Information Findings for Patients at risk of Missed Diagnosis. AMIA 2018 - 2017
- [j14]Kavishwar B. Wagholikar, Joshua C. Mandel, Jeffrey G. Klann, Nich Wattanasin, Michael Mendis, Christopher G. Chute, Kenneth D. Mandl, Shawn N. Murphy:
SMART-on-FHIR implemented over i2b2. J. Am. Medical Informatics Assoc. 24(2): 398-402 (2017) - [j13]Wei-Hung Weng, Kavishwar B. Wagholikar, Alexa T. McCray, Peter Szolovits, Henry C. Chueh:
Medical subdomain classification of clinical notes using a machine learning-based natural language processing approach. BMC Medical Informatics Decis. Mak. 17(1): 155:1-155:13 (2017) - [c26]Hossein Estiri, Jeffrey G. Klann, Kavishwar B. Wagholikar, Shawn N. Murphy:
Applying unsupervised learning to characterize rare observations in clinical data: the DQe-p tool. AMIA 2017 - [c25]Jeffrey G. Klann, Kavishwar B. Wagholikar, Lori C. Phillips, Matthew A. Joss, Shawn N. Murphy:
Web-Service-Enabled Apps for Research: SMART-on-FHIR for OMOP and PCORNet. AMIA 2017 - [c24]Wei-Hung Weng, Kavishwar B. Wagholikar, Henry Chueh:
Computing Performance Analysis on Clinical Document-level Classification. AMIA 2017 - [c23]Kavishwar B. Wagholikar, Rahul Jain, Eliel Oliveira, Joshua C. Mandel, Jeffrey G. Klann, Ricardo Colas, Prasad Patil, Kuladip Yadav, Kenneth D. Mandl, Shawn N. Murphy:
Evolving Research Data Sharing Networks to Clinical App Sharing Networks. CRI 2017 - [c22]Wei-Hung Weng, Kavishwar B. Wagholikar, Henry C. Chueh:
Classifiers for Identifying the Medical Specialty of Clinical Documents. CRI 2017 - 2016
- [j12]Ravikumar Komandur Elayavilli, Kavishwar B. Wagholikar, Dingcheng Li, Jean-Pierre A. Kocher, Hongfang Liu:
Erratum to: Text mining facilitates database curation - extraction of mutation-disease associations from Bio-medical literature. BMC Bioinform. 17: 162 (2016) - [c21]Stéphane M. Meystre, Hongfang Liu, Rong Xu, Sivaram Arabandi, Kavishwar B. Wagholikar, Jon D. Patrick, Guergana K. Savova, Chunhua Weng, Pierre Zweigenbaum, Dina Demner-Fushman, Özlem Uzuner, Hua Xu:
Natural Language Processing Working Group Pre-Symposium: Graduate Student Consortium and 'Hackathon'. AMIA 2016 - [c20]Kavishwar B. Wagholikar, Rahul Jain, Eliel Oliveira, Henry Chu, Harshal Shah, Joshua C. Mandel, Jeffrey G. Klann, Sohail Rao, Kenneth D. Mandl, Shawn N. Murphy, Thomas Carton:
Cajun Codefest 4.0 on SMART-on-FHIR apps for Diabetes. AMIA 2016 - [c19]Kavishwar B. Wagholikar, Rahul Jain, Eliel Oliveira, Joshua C. Mandel, Jeffrey G. Klann, Prasad Patil, Kenneth D. Mandl, Shawn N. Murphy, Thomas Carton:
Evaluation of SMART-on-FHIR I2b2 cell using PCORNET data model. AMIA 2016 - [c18]Wei-Hung Weng, Avni Khatri, Kavishwar B. Wagholikar, Adam Cohen, Henry Chueh:
Improving the Workflow of Curbside Consultation by Using Unstructured Clinical Notes - a Natural Language and Machine Learning-based Approach. AMIA 2016 - [c17]Kavishwar B. Wagholikar, Joshua C. Mandel, Jeffrey G. Klann, Nich Wattanasin, Michael Mendis, Christopher G. Chute, Kenneth D. Mandl, Shawn N. Murphy:
Read only SMART on FHIR Façade for I2b2. CRI 2016 - 2015
- [j11]Ravikumar Komandur Elayavilli, Kavishwar B. Wagholikar, Dingcheng Li, Jean-Pierre A. Kocher, Hongfang Liu:
Text mining facilitates database curation - extraction of mutation-disease associations from Bio-medical literature. BMC Bioinform. 16: 185:1-185:15 (2015) - [c16]Kathy L. MacLaughlin, Ravikumar Komandur Elayavilli, Kavishwar B. Wagholikar, Marianne R. Scheitel, Hongfang Liu, Rajeev Chaudhry:
Evaluation of the accuracy of CDS for cervical cancer screening and surveillance. AMIA 2015 - 2014
- [j10]Manabu Torii, Kavishwar B. Wagholikar, Hongfang Liu:
Detecting concept mentions in biomedical text using hidden Markov model: multiple concept types at once or one at a time? J. Biomed. Semant. 5: 3 (2014) - [c15]Ravikumar Komandur Elayavilli, Kavishwar B. Wagholikar, Hongfang Liu:
NLP enhances Quality Care Measures in Heart Failure. AMIA 2014 - [c14]K. E. Ravikumar, Kavishwar B. Wagholikar, Hongfang Liu:
Challenges in adapting text mining for full text articles to assist pathway curation. BCB 2014: 551-558 - [c13]K. E. Ravikumar, Kavishwar B. Wagholikar, Hongfang Liu:
Towards Pathway Curation Through Literature Mining - A Case Study Using PharmGKB. Pacific Symposium on Biocomputing 2014: 352-363 - 2013
- [j9]Kavishwar B. Wagholikar, Manabu Torii, Siddhartha Jonnalagadda, Hongfang Liu:
Pooling annotated corpora for clinical concept extraction. J. Biomed. Semant. 4: 3 (2013) - [j8]Kavishwar B. Wagholikar, Kathy L. MacLaughlin, Thomas M. Kastner, Petra M. Casey, Michael R. Henry, Robert A. Greenes, Hongfang Liu, Rajeev Chaudhry:
Research and applications: Formative evaluation of the accuracy of a clinical decision support system for cervical cancer screening. J. Am. Medical Informatics Assoc. 20(4): 749-757 (2013) - [j7]Sunghwan Sohn, Kavishwar B. Wagholikar, Dingcheng Li, Siddhartha Jonnalagadda, Cui Tao, Ravikumar Komandur Elayavilli, Hongfang Liu:
Comprehensive temporal information detection from clinical text: medical events, time, and TLINK identification. J. Am. Medical Informatics Assoc. 20(5): 836-842 (2013) - [c12]Kavishwar B. Wagholikar, Ronald A. Hankey, Hongfang Liu, Rajeev Chaudhry:
Decision Support can Improve Time Efficiency of Healthcare Providers for Deciding Preventive Care Recommendations. AMIA 2013 - [c11]Hongfang Liu, Kavishwar B. Wagholikar, Siddhartha Jonnalagadda, Sunghwan Sohn:
Integrated cTAKES for Concept Mention Detection and Normalization. CLEF (Working Notes) 2013 - 2012
- [j6]Kavishwar B. Wagholikar, Kathy L. MacLaughlin, Michael R. Henry, Robert A. Greenes, Ronald A. Hankey, Hongfang Liu, Rajeev Chaudhry:
Clinical decision support with automated text processing for cervical cancer screening. J. Am. Medical Informatics Assoc. 19(5): 833-839 (2012) - [j5]Siddhartha Jonnalagadda, Dingcheng Li, Sunghwan Sohn, Stephen Tze-Inn Wu, Kavishwar B. Wagholikar, Manabu Torii, Hongfang Liu:
Coreference analysis in clinical notes: a multi-pass sieve with alternate anaphora resolution modules. J. Am. Medical Informatics Assoc. 19(5): 867-874 (2012) - [j4]Kavishwar B. Wagholikar, Sanjeev Mangrulkar, Ashok W. Deshpande, Vijayraghavan Sundararajan:
Evaluation of Fuzzy Relation Method for Medical Decision Support. J. Medical Syst. 36(1): 233-239 (2012) - [j3]Kavishwar B. Wagholikar, Vijayraghavan Sundararajan, Ashok W. Deshpande:
Modeling Paradigms for Medical Diagnostic Decision Support: A Survey and Future Directions. J. Medical Syst. 36(5): 3029-3049 (2012) - [c10]Hongfang Liu, Stephen T. Wu, Dingcheng Li, Siddhartha Jonnalagadda, Sunghwan Sohn, Kavishwar B. Wagholikar, Peter J. Haug, Stanley M. Huff, Christopher G. Chute:
Towards a semantic lexicon for clinical natural language processing. AMIA 2012 - [c9]Kavishwar B. Wagholikar, Kathy L. MacLaughlin, Michael R. Henry, Robert A. Greenes, Ronald A. Hankey, Hongfang Liu, Rajeev Chaudhry:
Clinical Decision Support with Natural Language Processing for Cervical Cancer Screening. AMIA 2012 - [c8]Stephen T. Wu, Young J. Juhn, Sunghwan Sohn, Ravikumar Komandur Elayavilli, Kavishwar B. Wagholikar, Siddhartha Jonnalagadda, Hongfang Liu:
Asthma Status Identification with Natural Language Processing. AMIA 2012 - [c7]Bo Xu, Hongfei Lin, Zhihao Yang, Kavishwar B. Wagholikar, Hongfang Liu:
Classifying protein complexes from candidate subgraphs using fuzzy machine learning model. BIBM Workshops 2012: 640-647 - [c6]Kavishwar B. Wagholikar, Sunghwan Sohn, Stephen T. Wu, Vinod Kaggal, Sheila Buehler, Robert A. Greenes, Tsung-Teh Wu, David W. Larson, Hongfang Liu, Rajeev Chaudhry, Lisa Boardman:
Clinical Decision Support for Colonoscopy Surveillance Using Natural Language Processing. HISB 2012: 12-21 - [c5]Sunghwan Sohn, Sean P. Murphy, Siddhartha Jonnalagadda, Kavishwar B. Wagholikar, Stephen T. Wu, Christopher G. Chute, Hongfang Liu, Scott R. Halgrim:
Systematic Analysis of Cross-Institutional Medication Description Patterns in Clinical Notes. HISB 2012: 118 - 2011
- [j2]Manabu Torii, Kavishwar B. Wagholikar, Hongfang Liu:
Using machine learning for concept extraction on clinical documents from multiple data sources. J. Am. Medical Informatics Assoc. 18(5): 580-587 (2011) - [c4]Kavishwar B. Wagholikar, Manabu Torii, Hongfang Liu:
Human gene/protein synonym dictionary from WikiLinks. BCB 2011: 462-464 - [c3]Stephen T. Wu, Kavishwar B. Wagholikar, Sunghwan Sohn, Vinod Kaggal, Hongfang Liu:
Empirical Ontologies for Cohort Identification. TREC 2011
2000 – 2009
- 2008
- [j1]Kavishwar B. Wagholikar, Ashok W. Deshpande:
Fuzzy relation based modeling for medical diagnostic decision support: Case studies. Int. J. Knowl. Based Intell. Eng. Syst. 12(5-6): 319-326 (2008) - 2007
- [c2]Kavishwar B. Wagholikar, Ashok W. Deshpande:
Fuzzy Medical Diagnostic Decision Support with Semiautomatic Knowledge Acquisition: A Case Study in Infectious Diseases. IICAI 2007: 335-343 - 2005
- [c1]Kavishwar B. Wagholikar, Shirish Sutar, Ashok W. Deshpande:
Fuzzy Modeling in Medical Diagnosis: A Case Study for Cardiovascular Diseases. IICAI 2005: 1998-2005
Coauthor Index
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