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ORCIDMichael Snyder 0001
Michael P. Snyder
Person information
- affiliation: Stanford University School of Medicine, Stanford, CA, USA
- affiliation (former): Yale University, Department of Molecular, Cellular and Developmental Biology, New Haven, CT, USA
Other persons with the same name
- Michael Snyder — disambiguation page
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2020 – today
- 2024
[j46]Ashkan Dehghani Zahedani, Tracey McLaughlin, Arvind Veluvali, Nima Aghaeepour, Amir Hosseinian, Saransh Agarwal, Jingyi Ruan, Shital Tripathi, Mark Woodward, Noosheen Hashemi, Michael Snyder
:
Correction: Digital health application integrating wearable data and behavioral patterns improves metabolic health. npj Digit. Medicine 7(1) (2024)- [c24]Han Li, Jianyang Zeng, Michael P. Snyder, Sai Zhang:
PRS-Net: Interpretable Polygenic Risk Scores via Geometric Learning. RECOMB 2024: 377-380 - 2023
- [j45]Ryan T. Scott, Lauren M. Sanders, Erik L. Antonsen, Jaden J. A. Hastings, Seung-Min Park, Graham Mackintosh, Robert J. Reynolds, Adrienne L. Hoarfrost, Aenor Sawyer, Casey S. Greene, Benjamin S. Glicksberg, Corey A. Theriot, Daniel C. Berrios, Jack Miller, Joel Babdor, Richard Barker, Sergio E. Baranzini, Afshin Beheshti, Stuart J. Chalk, Guillermo M. Delgado-Aparicio, Melissa A. Haendel, Arif A. Hamid, Philip Heller, Daniel Jamieson, Katelyn J. Jarvis, John Kalantari, Kia Khezeli, Svetlana V. Komarova, Matthieu Komorowski, Prachi Kothiyal, Ashish Mahabal, Uri Manor, Héctor García Martín, Christopher E. Mason, Mona Matar, George I. Mias, Jerry G. Myers Jr., Charlotte A. Nelson, Jonathan Oribello, Patricia Parsons-Wingerter, R. K. Prabhu, Amina Ann Qutub, Jon Rask, Amanda Saravia-Butler, Suchi Saria, Nitin Kumar Singh, Michael Snyder, Frank Soboczenski, Karthik Soman, David Van Valen, Kasthuri Venkateswaran, Liz Warren, Liz Worthey, Jason H. Yang, Marinka Zitnik, Sylvain V. Costes:
Biomonitoring and precision health in deep space supported by artificial intelligence. Nat. Mac. Intell. 5(3): 196-207 (2023) - [j44]Lauren M. Sanders, Ryan T. Scott, Jason H. Yang, Amina Ann Qutub, Héctor García Martín, Daniel C. Berrios, Jaden J. A. Hastings, Jon Rask, Graham Mackintosh, Adrienne L. Hoarfrost, Stuart J. Chalk, John Kalantari, Kia Khezeli, Erik L. Antonsen, Joel Babdor, Richard Barker, Sergio E. Baranzini, Afshin Beheshti, Guillermo M. Delgado-Aparicio, Benjamin S. Glicksberg, Casey S. Greene, Melissa A. Haendel, Arif A. Hamid, Philip Heller, Daniel Jamieson, Katelyn J. Jarvis, Svetlana V. Komarova, Matthieu Komorowski, Prachi Kothiyal, Ashish Mahabal, Uri Manor, Christopher E. Mason, Mona Matar, George I. Mias, Jack Miller, Jerry G. Myers Jr., Charlotte A. Nelson, Jonathan Oribello, Seung-Min Park, Patricia Parsons-Wingerter, R. K. Prabhu, Robert J. Reynolds, Amanda Saravia-Butler, Suchi Saria, Aenor Sawyer, Nitin Kumar Singh, Michael Snyder, Frank Soboczenski, Karthik Soman, Corey A. Theriot, David Van Valen, Kasthuri Venkateswaran, Liz Warren, Liz Worthey, Marinka Zitnik, Sylvain V. Costes:
Biological research and self-driving labs in deep space supported by artificial intelligence. Nat. Mac. Intell. 5(3): 208-219 (2023) - [j43]Ashkan Dehghani Zahedani, Arvind Veluvali, Tracey McLaughlin, Nima Aghaeepour, Amir Hosseinian, Saransh Agarwal, Jingyi Ruan, Shital Tripathi, Mark Woodward, Noosheen Hashemi, Michael Snyder:
Digital health application integrating wearable data and behavioral patterns improves metabolic health. npj Digit. Medicine 6 (2023) - [c23]Renee D. White, Tristan Peng, Pann Sripitak, Alexander Rosenberg Johansen, Michael Snyder:
CliniDigest: A Case Study in Large Language Model Based Large-Scale Summarization of Clinical Trial Descriptions. GoodIT 2023: 396-402 - [c22]Nina I. Shamsi, Lars A. Gjesteby, David Chavez, Michael Snyder, Brian S. Eastwood, Matthew G. Fay, Nathan J. O'Connor, Jack R. Glaser, Charles R. Gerfen, Laura J. Brattain:
Self-Supervised Learning to Improve Topology-Optimized Axon Segmentation and Centerline Detection. ISBI 2023: 1-4 - [c21]Daisy Yi Ding, Xiaotao Shen, Michael Snyder, Robert Tibshirani:
Semi-supervised Cooperative Learning for Multiomics Data Fusion. ML4MHD 2023: 54-63 - [i5]Renee D. White, Tristan Peng, Pann Sripitak, Alexander Rosenberg Johansen, Michael Snyder:
CliniDigest: A Case Study in Large Language Model Based Large-Scale Summarization of Clinical Trial Descriptions. CoRR abs/2307.14522 (2023) - 2022
- [j42]Xiaotao Shen, Wei Shao, Chuchu Wang, Liang Liang, Songjie Chen, Sai Zhang, Mirabela Rusu, Michael P. Snyder:
Deep learning-based pseudo-mass spectrometry imaging analysis for precision medicine. Briefings Bioinform. 23(5) (2022) - [j41]Xiaotao Shen, Si Wu, Liang Liang, Songjie Chen, Kévin Contrepois, Zheng-Jiang Zhu, Michael P. Snyder:
metID: an R package for automatable compound annotation for LC-MS-based data. Bioinform. 38(2): 568-569 (2022) - [j40]Ahmed A. Metwally, Tom Zhang, Si Wu, Ryan Kellogg, Wenyu Zhou, Kévin Contrepois, Hua Tang, Michael Snyder:
Robust identification of temporal biomarkers in longitudinal omics studies. Bioinform. 38(15): 3802-3811 (2022) - [j39]Xiaotao Shen, Chuchu Wang, Michael P. Snyder:
massDatabase: utilities for the operation of the public compound and pathway database. Bioinform. 38(19): 4650-4651 (2022) - [j38]Md. Mobashir Hasan Shandhi, Peter J. Cho, Ali R. Roghanizad, Karnika Singh, Will Ke Wang, Oana M. Enache, Amanda Stern, Rami Sbahi, Bilge Tatar, Sean Fiscus, Qi Xuan Khoo, Yvonne Kuo, Xiao Lu, Joseph Hsieh, Alena Kalodzitsa, Amir Bahmani, Arash Alavi, Utsab Ray, Michael P. Snyder, Geoffrey S. Ginsburg, Dana K. Pasquale, Christopher W. Woods, Ryan J. Shaw, Jessilyn Dunn:
A method for intelligent allocation of diagnostic testing by leveraging data from commercial wearable devices: a case study on COVID-19. npj Digit. Medicine 5 (2022) - [j37]Ivana Maric, Kévin Contrepois, Mira N. Moufarrej, Ina A. Stelzer, Dorien Feyaerts, Xiaoyuan Han, Andy Tang, Natalie Stanley, Ronald J. Wong, Gavin M. Traber, Mathew Ellenberger, Alan L. Chang, Ramin Fallahzadeh, Huda Nassar, Martin Becker, Maria Xenochristou, Camilo Espinosa, Davide De Francesco, Mohammad S. Ghaemi, Elizabeth K. Costello, Anthony Culos, Xuefeng Bruce Ling, Karl G. Sylvester, Gary L. Darmstadt, Virginia D. Winn, Gary M. Shaw, David A. Relman, Stephen R. Quake, Martin S. Angst, Michael P. Snyder, David K. Stevenson, Brice Gaudilliere, Nima Aghaeepour:
Early prediction and longitudinal modeling of preeclampsia from multiomics. Patterns 3(12): 100655 (2022) - [c20]Dylan Pollack, Lars A. Gjesteby, Michael Snyder, David Chavez, Lee Kamentsky, Kwanghun Chung, Laura J. Brattain:
Axon Tracing and Centerline Detection using Topologically-Aware 3D U-Nets. EMBC 2022: 238-242 - 2021
- [j36]Hootan Rashtian, Solmaz Shariat Torbaghan, Salar Rahili, Michael P. Snyder, Nima Aghaeepour:
Heart Rate and CGM Feature Representation Diabetes Detection From Heart Rate: Learning Joint Features of Heart Rate and Continuous Glucose Monitors Yields Better Representations. IEEE Access 9: 83234-83240 (2021) - [j35]Meng Wang, Lihua Jiang, Ruiqi Jian, Joanne Y. Chan, Qing Liu, Michael Snyder, Hua Tang:
RobNorm: model-based robust normalization method for labeled quantitative mass spectrometry proteomics data. Bioinform. 37(6): 815-821 (2021) - [j34]Amir Bahmani, Ziye Xing, Vandhana Krishnan, Utsab Ray, Frank Mueller, Amir Alavi, Philip S. Tsao, Michael P. Snyder, Cuiping Pan:
Hummingbird: efficient performance prediction for executing genomic applications in the cloud. Bioinform. 37(17): 2537-2543 (2021) - [j33]Meng Wang, Lihua Jiang, Michael P. Snyder:
AdaTiSS: a novel data-Adaptive robust method for identifying Tissue Specificity Scores. Bioinform. 37(23): 4469-4476 (2021) - [j32]Vandhana Krishnan, Sowmithri Utiramerur, Zena Ng, Somalee Datta, Michael Snyder, Euan A. Ashley:
Benchmarking workflows to assess performance and suitability of germline variant calling pipelines in clinical diagnostic assays. BMC Bioinform. 22(1): 85 (2021) - [j31]Muhammad Arif, Cheng Zhang, Xiangyu Li, Cem Güngör, Bugra Çakmak, Metin Arslantürk, Abdellah Tebani, Berkay Özcan, Oguzhan Subas, Wenyu Zhou, Brian Piening, Hasan Turkez, Linn Fagerberg, Nathan Price, Leroy Hood, Michael Snyder, Jens Nielsen, Mathias Uhlen, Adil Mardinoglu:
iNetModels 2.0: an interactive visualization and database of multi-omics data. Nucleic Acids Res. 49(Webserver-Issue): 271-276 (2021) - [j30]Amir Bahmani, Kyle Ferriter, Vandhana Krishnan, Arash Alavi, Amir Alavi, Philip S. Tsao, Michael P. Snyder, Cuiping Pan:
Swarm: A federated cloud framework for large-scale variant analysis. PLoS Comput. Biol. 17(5) (2021) - [c19]Ahmed A. Metwally, Ariel K. Leong, Aman Desai, Anvith Nagarjuna, Dalia Perelman, Michael Snyder:
Learning Personal Food Preferences via Food Logs Embedding. BIBM 2021: 2281-2286 - [c18]Hayan Lee, Gilbert Feng, Ed Esplin, Michael P. Snyder:
Predictive Signatures for Lung Adenocarcinoma Prognostic Trajectory by Multiomics Data Integration and Ensemble Learning. ISMCO 2021: 9-23 - [i4]Ahmed A. Metwally, Ariel K. Leong, Aman Desai, Anvith Nagarjuna, Dalia Perelman, Michael Snyder:
Learning Personal Food Preferences via Food Logs Embedding. CoRR abs/2110.15498 (2021) - [i3]Ryan T. Scott, Erik L. Antonsen, Lauren M. Sanders, Jaden J. A. Hastings, Seung-Min Park, Graham Mackintosh, Robert J. Reynolds, Adrienne L. Hoarfrost, Aenor Sawyer, Casey S. Greene, Benjamin S. Glicksberg, Corey A. Theriot, Daniel C. Berrios, Jack Miller, Joel Babdor, Richard Barker, Sergio E. Baranzini, Afshin Beheshti, Stuart J. Chalk, Guillermo M. Delgado-Aparicio, Melissa A. Haendel, Arif A. Hamid, Philip Heller, Daniel Jamieson, Katelyn J. Jarvis, John Kalantari, Kia Khezeli, Svetlana V. Komarova, Matthieu Komorowski, Prachi Kothiyal, Ashish Mahabal, Uri Manor, Héctor García Martín, Christopher E. Mason, Mona Matar, George I. Mias, Jerry G. Myers Jr., Charlotte A. Nelson, Jonathan Oribello, Patricia Parsons-Wingerter, R. K. Prabhu, Amina Ann Qutub, Jon Rask, Amanda Saravia-Butler, Suchi Saria, Nitin Kumar Singh, Frank Soboczenski, Michael Snyder, Karthik Soman, David Van Valen, Kasthuri Venkateswaran, Liz Warren, Liz Worthey, Jason H. Yang, Marinka Zitnik, Sylvain V. Costes:
Beyond Low Earth Orbit: Biomonitoring, Artificial Intelligence, and Precision Space Health. CoRR abs/2112.12554 (2021) - [i2]Lauren M. Sanders, Jason H. Yang, Ryan T. Scott, Amina Ann Qutub, Héctor García Martín, Daniel C. Berrios, Jaden J. A. Hastings, Jon Rask, Graham Mackintosh, Adrienne L. Hoarfrost, Stuart J. Chalk, John Kalantari, Kia Khezeli, Erik L. Antonsen, Joel Babdor, Richard Barker, Sergio E. Baranzini, Afshin Beheshti, Guillermo M. Delgado-Aparicio, Benjamin S. Glicksberg, Casey S. Greene, Melissa A. Haendel, Arif A. Hamid, Philip Heller, Daniel Jamieson, Katelyn J. Jarvis, Svetlana V. Komarova, Matthieu Komorowski, Prachi Kothiyal, Ashish Mahabal, Uri Manor, Christopher E. Mason, Mona Matar, George I. Mias, Jack Miller, Jerry G. Myers Jr., Charlotte A. Nelson, Jonathan Oribello, Seung-Min Park, Patricia Parsons-Wingerter, R. K. Prabhu, Robert J. Reynolds, Amanda Saravia-Butler, Suchi Saria, Aenor Sawyer, Nitin Kumar Singh, Frank Soboczenski, Michael Snyder, Karthik Soman, Corey A. Theriot, David Van Valen, Kasthuri Venkateswaran, Liz Warren, Liz Worthey, Marinka Zitnik, Sylvain V. Costes:
Beyond Low Earth Orbit: Biological Research, Artificial Intelligence, and Self-Driving Labs. CoRR abs/2112.12582 (2021) - 2020
- [j29]Kun-Hsing Yu, Feiran Wang, Gerald J. Berry, Christopher Ré, Russ B. Altman, Michael Snyder, Isaac S. Kohane:
Classifying non-small cell lung cancer types and transcriptomic subtypes using convolutional neural networks. J. Am. Medical Informatics Assoc. 27(5): 757-769 (2020) - [c17]Adam Michaleas, Lars Gjesteby, Michael P. Snyder, David Chavez, Meagan Ash, Matthew A. Melton, Damon G. Lamb, Sara N. Burke, Kevin J. Otto, Lee Kamentsky, Webster Guan, Kwanghun Chung, Laura J. Brattain:
Active Learning Pipeline for Brain Mapping in a High Performance Computing Environment. HPEC 2020: 1-6
2010 – 2019
- 2019
- [j28]Mohammad Sajjad Ghaemi, Daniel B. DiGiulio, Kévin Contrepois, Benjamin J. Callahan, Thuy T. M. Ngo, Brittany Lee-McMullen, Benoit Lehallier, Anna Robaczewska, David Mcilwain, Yael Rosenberg-Hasson, Ronald J. Wong, Cecele Quaintance, Anthony Culos, Natalie Stanley, Athena Tanada, Amy Tsai, Dyani Gaudilliere, Edward Ganio, Xiaoyuan Han, Kazuo Ando, Leslie McNeil, Martha Tingle, Paul H. Wise, Ivana Maric, Marina Sirota, Tony Wyss-Coray, Virginia D. Winn, Maurice L. Druzin, Ronald Gibbs, Gary L. Darmstadt, David B. Lewis, Vahid Partovi Nia, Bruno Agard, Robert Tibshirani, Garry P. Nolan, Michael P. Snyder, David A. Relman, Stephen R. Quake, Gary M. Shaw, David K. Stevenson, Martin S. Angst, Brice Gaudilliere, Nima Aghaeepour:
Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy. Bioinform. 35(1): 95-103 (2019) - [j27]Michael P. Snyder, Shin Lin, Amanda Posgai, Mark Atkinson, Aviv Regev, Jennifer Rood, Orit Rozenblatt-Rosen, Leslie Gaffney, Anna Hupalowska, Rahul Satija, Nils Gehlenborg, Jay Shendure, Julia Laskin, Pehr Harbury, Nicholas A. Nystrom, Jonathan C. Silverstein, Ziv Bar-Joseph, Kun Zhang, Katy Börner, Yiing Lin, Richard Conroy, Dena Procaccini, Ananda L. Roy, Ajay Pillai, Marishka Brown, Zorina S. Galis, Long Cai, Cole Trapnell, Dana Jackson, Garry P. Nolan, William James Greenleaf, Sylvia K. Plevritis, Sara Ahadi, Stephanie A. Nevins, Hayan Lee, Christian Martijn Schuerch, Sarah Black, Vishal Gautham Venkataraaman, Ed Esplin, Aaron Horning, Amir Bahmani, Xin Sun, Sanjay Jain, James S. Hagood, Gloria Pryhuber, Peter V. Kharchenko, Bernd Bodenmiller, Todd Brusko, Michael Clare-Salzler, Harry Nick, Kevin Otto, Clive Wasserfall, Marda Jorgensen, Maigan Brusko, Sergio Maffioletti, Richard M. Caprioli, Jeffrey M. Spraggins, Danielle Gutierrez, Nathan Heath Patterson, Elizabeth K. Neumann, Raymond Harris, Mark P. de Caestecker, Agnes B. Fogo, Raf Van de Plas, Ken Lau, Guo-Cheng Yuan, Qian Zhu, Ruben Dries, Peng Yin, Sinem K. Saka, Jocelyn Y. Kishi, Yu Wang, Isabel Goldaracena, Dong Hye Ye, Kristin E. Burnum-Johnson, Paul D. Piehowski, Charles Ansong, Ying Zhu, Tushar Desai, Jay Mulye, Peter Chou, Monica Nagendran, Sarah A. Teichmann, Benedict Paten, Robert F. Murphy, Jian Ma, Vladimir Yu. Kiselev, Carl Kingsford, Allyson Ricarte, Maria Keays, Sushma Anand Akoju, Matthew Ruffalo, Margaret Vella, Chuck McCallum, Leonard E. Cross, Samuel H. Friedman, Randy W. Heiland, Bruce William Herr II, Paul Macklin, Ellen M. Quardokus, Lisel Record, James P. Sluka, Griffin M. Weber, Philip D. Blood, Alexander Ropelewski, William Shirey, Robin M. Scibek, Paula M. Mabee, W. Christopher Lenhardt, Kimberly Robasky, Stavros Michailidis, John C. Marioni, Andrew Butler, Tim Stuart, Eyal Fisher, Shila Ghazanfar, Gökcen Eraslan, Tommaso Biancalani, Eeshit D. Vaishnav, Pothur Srinivas, Aaron Pawlyk, Salvatore Sechi, Elizabeth L. Wilder, James Anderson:
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program. Nat. 574(7777): 187-192 (2019) - [c16]Kun-Hsing Yu, Feiran Wang, Gerald J. Berry, Christopher Ré, Russ B. Altman, Michael Snyder, Isaac S. Kohane:
Classifying Non-Small Cell Lung Cancer Histopathology Types and Transcriptomic Subtypes using Convolutional Neural Networks. AMIA 2019 - 2018
- [j26]Kun-Hsing Yu, Michael R. Fitzpatrick, Luke Pappas, Warren Chan, Jessica Kung, Michael Snyder:
Omics AnalySIs System for PRecision Oncology (OASISPRO): a web-based omics analysis tool for clinical phenotype prediction. Bioinform. 34(2): 319-320 (2018) - [j25]Victoria Popic, Volodymyr Kuleshov, Michael P. Snyder, Serafim Batzoglou:
Fast Metagenomic Binning via Hashing and Bayesian Clustering. J. Comput. Biol. 25(7): 677-688 (2018) - [c15]Kun-Hsing Yu, Gerald J. Berry, Daniel L. Rubin, Christopher Ré, Russ B. Altman, Michael Snyder:
Unraveling the Molecular Basis of Lung Adenocarcinoma Dedifferentiation and Prognosis by Integrating Omics and Histopathology. AMIA 2018 - 2017
- [j24]Cuiping Pan, Gregory McInnes, Nicole Deflaux, Michael Snyder, Jonathan Bingham, Somalee Datta, Philip S. Tsao:
Cloud-based interactive analytics for terabytes of genomic variants data. Bioinform. 33(23): 3709-3715 (2017) - [c14]Kun-Hsing Yu, Ce Zhang, Gerald J. Berry, Russ B. Altman, Christopher Ré, Daniel L. Rubin, Michael Snyder:
Predicting Non-Small Cell Lung Cancer Diagnosis and Prognosis by Fully Automated Microscopic Pathology Image Features. AMIA 2017 - [c13]Jessilyn Dunn, Xiao Li, Denis Salins, Michael Snyder:
Consumer Wearable Devices for Health Surveillance and Disease Monitoring. CRI 2017 - [c12]Kun-Hsing Yu, Steven N. Hart, Rachel L. Goldfeder, Qiangfeng Cliff Zhang, Stephen C. J. Parker, Michael Snyder:
Harnessing Big Data for Precision Medicine: Infrastructures and Applications. PSB 2017: 635-639 - [c11]Victoria Popic, Volodymyr Kuleshov, Michael P. Snyder, Serafim Batzoglou:
GATTACA: Lightweight Metagenomic Binning Using Kmer Counting. RECOMB 2017: 391-392 - 2016
- [j23]Volodymyr Kuleshov, Michael P. Snyder, Serafim Batzoglou:
Genome assembly from synthetic long read clouds. Bioinform. 32(12): 216-224 (2016) - [j22]Qi Zhang, Xin Zeng, Samuel G. Younkin, Trupti Kawli, Michael P. Snyder, Sündüz Keles:
Systematic evaluation of the impact of ChIP-seq read designs on genome coverage, peak identification, and allele-specific binding detection. BMC Bioinform. 17: 96 (2016) - [c10]Rafael A. Calvo, Nick Haber, Catalin Voss, Michael Nova, Dennis Salins, Michael Snyder, Dennis P. Wall:
Invited Talks at the AAAI Symposium on Well-Being Computing. AAAI Spring Symposia 2016 - 2015
- [j21]Douglas H. Phanstiel, Alan P. Boyle, Nastaran Heidari, Michael P. Snyder:
Mango: a bias-correcting ChIA-PET analysis pipeline. Bioinform. 31(19): 3092-3098 (2015) - 2014
- [j20]Douglas H. Phanstiel, Alan P. Boyle, Carlos L. Araya, Michael P. Snyder:
Sushi.R: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures. Bioinform. 30(19): 2808-2810 (2014) - [j19]Alan P. Boyle, Carlos L. Araya, Cathleen Brdlik, Philip Cayting, Chao Cheng, Yong Cheng, Kathryn Gardner, LaDeana W. Hillier, Judith Janette, Lixia Jiang, Dionna Kasper, Trupti Kawli, Pouya Kheradpour, Anshul Kundaje, Jingyi Jessica Li, Lijia Ma, Wei Niu, E. Jay Rehm, Joel S. Rozowsky, Matthew Slattery, Rebecca Spokony, Robert Terrell, Dionne Vafeados, Daifeng Wang, Peter Weisdepp, Yi-Chieh Wu, Dan Xie, Koon-Kiu Yan, Elise A. Feingold, Peter J. Good, Michael J. Pazin, Haiyan Huang, Peter J. Bickel, Steven E. Brenner, Valerie Reinke, Robert H. Waterston, Mark Gerstein, Kevin P. White, Manolis Kellis, Michael Snyder:
Comparative analysis of regulatory information and circuits across distant species Open. Nat. 512(7515): 453-456 (2014) - [j18]Benjamin D. Pope, Tyrone Ryba, Vishnu Dileep, Feng Yue, Wei-Sheng Wu, Olgert Denas, Daniel L. Vera, Yanli Wang, R. Scott Hansen, Theresa K. Canfield, Robert E. Thurman, Yong Cheng, Günhan Gülsoy, Jonathan H. Dennis, Michael P. Snyder, John A. Stamatoyannopoulos, James Taylor, Ross C. Hardison, Tamer Kahveci, Bing Ren, David M. Gilbert:
Topologically associating domains are stable units of replication-timing regulation Open. Nat. 515(7527): 402-405 (2014) - [c9]Roxana Daneshjou, Zachary Zappala, Kimberly R. Kukurba, Sean M. Boyle, Kelly E. Ormond, Teri E. Klein, Michael Snyder, Carlos D. Bustamante, Russ B. Altman, Stephen B. Montgomery:
PATH-SCAN: A Reporting Tool for Identifying Clinically Actionable Variants. Pacific Symposium on Biocomputing 2014: 229-240 - 2013
- [j17]Eugene Kolker, Vural Özdemir, Lennart Martens, William Hancock, Gordon A. Anderson, Nathaniel Anderson, Sukru Aynacioglu, Ancha V. Baranova, Shawn R. Campagna, Rui Chen, John Choiniere, Stephen P. Dearth, Wu-Chun Feng, Lynnette Ferguson, Geoffrey C. Fox, Dmitrij Frishman, Robert Grossman, Allison P. Heath, Roger Higdon, Mara H. Hutz, Imre Janko, Lihua Jiang, Sanjay Joshi, Alexander E. Kel, Joseph W. Kemnitz, Isaac S. Kohane, Natali Kolker, Doron Lancet, Elaine Lee, Weizhong Li, Andrey Lisitsa, Adrian Llerena, Courtney MacNealy-Koch, Jean-Claude Marshall, Paola Masuzzo, Amanda May, George Mias, Matthew E. Monroe, Elizabeth Montague, Sean D. Mooney, Alexey I. Nesvizhskii, Santosh Noronha, Gilbert S. Omenn, Harsha Rajasimha, Preveen Ramamoorthy, Jerry Sheehan, Larry Smarr, Charles V. Smith, Todd Smith, Michael Snyder, Srikanth Rapole, Sanjeeva Srivastava, Larissa Stanberry, Elizabeth Stewart, Stefano Toppo, Peter Uetz, Kenneth Verheggen, Brynn H. Voy, Louise Warnich, Steven W. Wilhelm, Gregory Yandl:
Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications. Big Data 1(4): 196-201 (2013) - [j16]Michael Snyder, George Mias, Larissa Stanberry, Eugene Kolker:
Metadata Checklist for the Integrated Personal Omics Study: Proteomics and Metabolomics Experiments. Big Data 1(4): 202-206 (2013) - [j15]George Mias, Michael Snyder:
Personal genomes, quantitative dynamic omics and personalized medicine. Quant. Biol. 1(1): 71-90 (2013) - [i1]Anshul Kundaje, Sofia Kyriazopoulou-Panagiotopoulou, Max W. Libbrecht, Cheryl L. Smith, Debasish Raha, Elliott E. Winters, Steven M. Johnson, Michael P. Snyder, Serafim Batzoglou, Arend Sidow:
Clustering reveals ubiquitous heterogeneity and asymmetry of genomic signals at functional elements. Tiny Trans. Comput. Sci. 2 (2013) - 2012
- [j14]Lukas Habegger, Suganthi Balasubramanian, David Z. Chen, Ekta Khurana, Andrea Sboner, Arif Ozgun Harmanci, Joel S. Rozowsky, Declan Clarke, Michael Snyder, Mark Gerstein:
VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment. Bioinform. 28(17): 2267-2269 (2012) - [j13]Jiantao Wu, Krzysztof R. Grzeda, Chip Stewart, Fabian Grubert, Alexander E. Urban, Michael P. Snyder, Gabor T. Marth:
Copy Number Variation detection from 1000 Genomes project exon capture sequencing data. BMC Bioinform. 13: 305 (2012) - [c8]Konrad J. Karczewski, Robert P. Tirrell, Pablo Cordero, Nicholas P. Tatonetti, Joel T. Dudley, Keyan Salari, Michael Snyder, Russ B. Altman, Stuart K. Kim:
Interpretome: A Freely Available, Modular, and Secure Personal Genome Interpretation Engine. Pacific Symposium on Biocomputing 2012: 339-350 - 2011
- [j12]Lukas Habegger, Andrea Sboner, Tara A. Gianoulis, Joel S. Rozowsky, Ashish Agarwal, Michael Snyder, Mark Gerstein:
RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries. Bioinform. 27(2): 281-283 (2011) - [j11]Chong Shou, Nitin Bhardwaj, Hugo Y. K. Lam, Koon-Kiu Yan, Philip M. Kim, Michael Snyder, Mark B. Gerstein:
Measuring the Evolutionary Rewiring of Biological Networks. PLoS Comput. Biol. 7(1) (2011) - [j10]Chao Cheng, Koon-Kiu Yan, Woochang Hwang, Jiang Qian, Nitin Bhardwaj, Joel S. Rozowsky, Zhi John Lu, Wei Niu, Pedro Alves, Masaomi Kato, Michael Snyder, Mark Gerstein:
Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data. PLoS Comput. Biol. 7(11) (2011) - 2010
- [j9]Hugo Y. K. Lam, Philip M. Kim, Janine Mok, Raffi Tonikian, Sachdev S. Sidhu, Benjamin E. Turk, Michael Snyder, Mark B. Gerstein:
MOTIPS: Automated Motif Analysis for Predicting Targets of Modular Protein Domains. BMC Bioinform. 11: 243 (2010)
2000 – 2009
- 2009
- [j8]Jiang Du, Robert D. Bjornson, Zhengdong D. Zhang, Yong Kong, Michael Snyder, Mark B. Gerstein:
Integrating Sequencing Technologies in Personal Genomics: Optimal Low Cost Reconstruction of Structural Variants. PLoS Comput. Biol. 5(7) (2009) - 2008
- [j7]Zhengdong D. Zhang, Joel S. Rozowsky, Michael Snyder, Joseph T. Chang, Mark Gerstein:
Modeling ChIP Sequencing In Silico with Applications. PLoS Comput. Biol. 4(8) (2008) - 2006
- [j6]Jiang Du, Joel S. Rozowsky, Jan O. Korbel, Zhengdong D. Zhang, Thomas E. Royce, Martin H. Schultz, Michael Snyder, Mark Gerstein:
A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge. Bioinform. 22(24): 3016-3024 (2006) - [c7]Frederick G. Sayward, Jin Yang, Kenneth Nelson, Ghia Euskirchen, Alexander E. Urban, Paul Bertone, John Rinn, Sherman Weissman, Mark Gerstein, Michael Snyder, Perry L. Miller:
Design Issues in Implementing a Portable Sample Tracking and Analysis Research Support (STARS) System for PCR Based Microarray Research. CISS 2006: 1578-1598 - 2005
- [c6]Joel S. Rozowsky, Paul Bertone, Thomas E. Royce, Sherman Weissman, Michael Snyder, Mark Gerstein:
Analysis of Genomic Tiling Microarrays for Transcript Mapping and the Identification of Transcription Factor Binding Sites. BSB 2005: 28-29 - 2004
- [j5]Piotr Berman, Paul Bertone, Bhaskar DasGupta, Mark Gerstein, Ming-Yang Kao, Michael Snyder:
Fast Optimal Genome Tiling with Applications to Microarray Design and Homology Search. J. Comput. Biol. 11(4): 766-785 (2004) - 2003
- [j4]Nicholas M. Luscombe, Thomas E. Royce, Paul Bertone, Nathaniel Echols, Christine E. Horak, Joseph T. Chang, Michael Snyder, Mark Gerstein:
ExpressYourself: a modular platform for processing and visualizing microarray data. Nucleic Acids Res. 31(13): 3477-3482 (2003) - 2002
- [j3]Kei-Hoi Cheung, Janet Hager, Kenneth Nelson, Kevin P. White, Yuli Li, Michael Snyder, Kenneth R. Williams, Perry L. Miller:
A dynamic approach to mapping coordinates between microplates and microarrays. J. Biomed. Informatics 35(5-6): 306-312 (2002) - [j2]Anuj Kumar, Kei-Hoi Cheung, Nick P. Tosches, Peter Masiar, Yang Liu, Perry L. Miller, Michael Snyder:
The TRIPLES database: a community resource for yeast molecular biology. Nucleic Acids Res. 30(1): 73-75 (2002) - [c5]Kei-Hoi Cheung, Kevin P. White, Janet Hager, Mark Gerstein, Valerie Reinke, Kenneth Nelson, Peter Masiar, Ranjana Srivastava, Yuli Li, Ju Li, Hongyu Zhao, Jinming Li, David B. Allison, Michael Snyder, Perry L. Miller, Kenneth R. Williams:
YMD: a microarray database for large-scale gene expression analysis. AMIA 2002 - [c4]Piotr Berman, Paul Bertone, Bhaskar DasGupta, Mark Gerstein, Ming-Yang Kao, Michael Snyder:
Fast Optimal Genome Tiling with Applications to Microarray Design and Homology Search. WABI 2002: 419-433 - 2001
- [c3]Kei-Hoi Cheung, Aniruddha M. Deshpande, Nick P. Tosches, S. Nath, A. Agrawal, Perry L. Miller, Anuj Kumar, Michael Snyder:
A metadata framework for interoperating heterogeneous genome data using XML. AMIA 2001 - [c2]Kei-Hoi Cheung, Yang Liu, Anuj Kumar, Michael Snyder, Mark Gerstein, Perry L. Miller:
An XML Application For Genomic Data Interoperation. BIBE 2001: 97-103 - 2000
- [j1]Anuj Kumar, Kei-Hoi Cheung, Petra Ross-MacDonald, Paulo S. R. Coelho, Perry L. Miller, Michael Snyder:
TRIPLES: a database of gene function in Saccharomyces cerevisiae. Nucleic Acids Res. 28(1): 81-84 (2000) - [c1]Kei-Hoi Cheung, Perry L. Miller, A. H. Sherman, Stephen B. Weston, Eric Stratmann, Martin H. Schultz, Michael Snyder, Anuj Kumar:
Graphically-enabled integration of bioinformatics tools allowing parallel execution. AMIA 2000
Coauthor Index
Mark Gerstein
aka: Mark B. Gerstein
aka: Mark B. Gerstein
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