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2020 – today
- 2024
[c62]Lina Meyer, Lena-Marie Woelk, Christine E. Gee, Christian Lohr, Sukanya A. Kannabiran, Björn-Philipp Diercks
, René Werner:
Deep Image Prior for Spatio-temporal Fluorescence Microscopy Images DECO-DIP. Bildverarbeitung für die Medizin 2024: 322-327- 2023
- [c61]Moritz Wallrodt, Maximilian Schulz-Alsen, Hanno Ehlken, Thomas Rösch, Rüdiger Schmitz, René Werner:
Extending Tempcyclegan for Virtual Augmentation of Gastrointestinal Endoscopy Training Simulators. Bildverarbeitung für die Medizin 2023: 3-8 - [c60]Hümeyra Husseini, Maximilian Nielsen, Klaus Pantel, Harriet Wikman, Sabine Riethdorf, René Werner:
Label Efficient Classification in Liquid Biopsy Data by Self-supervision. Bildverarbeitung für die Medizin 2023: 261-266 - [i8]Maximilian Nielsen, Laura Wenderoth, Thilo Sentker, René Werner:
Self-supervision for medical image classification: state-of-the-art performance with ~100 labeled training samples per class. CoRR abs/2304.05163 (2023) - [i7]Aneeq Zia, Kiran Bhattacharyya, Xi Liu, Max Berniker, Ziheng Wang, Rogerio Nespolo, Satoshi Kondo, Satoshi Kasai, Kousuke Hirasawa, Bo Liu, David Austin, Yiheng Wang, Michal Futrega, Jean-Francois Puget, Zhenqiang Li, Yoichi Sato, Ryo Fujii, Ryo Hachiuma, Mana Masuda, Hideo Saito, An Wang, Mengya Xu, Mobarakol Islam, Long Bai, Winnie Pang, Hongliang Ren, Chinedu Innocent Nwoye, Luca Sestini, Nicolas Padoy, Maximilian Nielsen, Samuel Schüttler, Thilo Sentker, Hümeyra Husseini, Ivo M. Baltruschat, Rüdiger Schmitz, René Werner, Aleksandr Matsun, Mugariya Farooq, Numan Saeed, Jose Renato Restom Viera, Mohammad Yaqub, Neil Getty, Fangfang Xia, Zixuan Zhao, Xiaotian Duan, Xing Yao, Ange Lou, Hao Yang, Jintong Han, Jack H. Noble, Jie Ying Wu, Tamer Abdulbaki Alshirbaji, Nour Aldeen Jalal, Herag Arabian, Ning Ding, Knut Moeller, Weiliang Chen, Quan He, Lena Maier-Hein, Danail Stoyanov, Stefanie Speidel, Anthony M. Jarc:
Surgical tool classification and localization: results and methods from the MICCAI 2022 SurgToolLoc challenge. CoRR abs/2305.07152 (2023) - 2022
- [c59]Samuel Schüttler, Frederic Madesta, Thomas Rösch, René Werner, Rüdiger Schmitz:
Reinforcement learning-basierte Patchpriorisierung zur beschleunigten Segmentierung von hochauflösenden Endoskopievideodaten. Bildverarbeitung für die Medizin 2022: 339-344 - [i6]Frederic Madesta, Thilo Sentker, Tobias Gauer, René Werner:
Deep learning-based conditional inpainting for restoration of artifact-affected 4D CT images. CoRR abs/2203.06431 (2022) - 2021
- [j9]Dong Li, Guangyu Wang, René Werner, Hong Xie, Ji-Song Guan, Claus C. Hilgetag:
Single Image-Based Vignetting Correction for Improving the Consistency of Neural Activity Analysis in 2-Photon Functional Microscopy. Frontiers Neuroinformatics 15: 674439 (2021) - [j8]Rüdiger Schmitz, Frederic Madesta, Maximilian Nielsen, Jenny Krause, Stefan Steurer, René Werner, Thomas Rösch:
Multi-scale fully convolutional neural networks for histopathology image segmentation: From nuclear aberrations to the global tissue architecture. Medical Image Anal. 70: 101996 (2021) - [c58]Frederic Madesta, Rüdiger Schmitz, Thomas Rösch, René Werner:
Abstract: Widening the Focus - Biomedical Image Segmentation Challenges and the Underestimated Role of Patch Sampling and Inference Strategies. Bildverarbeitung für die Medizin 2021: 253 - [c57]Maximilian Nielsen, Moritz Waldmann, Thilo Sentker, Andreas Frölich, Jens Fiehler, René Werner:
Abstract: Time Matters - Handling Spatio-temporal Perfusion Information for Automated Treatment in Cerebral Ischemia Scoring. Bildverarbeitung für die Medizin 2021: 297 - [c56]Ivo M. Baltruschat, Patryk Szwargulski, Florian Griese, Mirco Grosser, René Werner, Tobias Knopp:
Abstract: Reduktion der Kalibrierungszeit für die Magnetpartikelbildgebung mittels Deep Learning. Bildverarbeitung für die Medizin 2021: 337 - 2020
- [j7]Nils Gessert, Thilo Sentker, Frederic Madesta, Rüdiger Schmitz, Helge Kniep, Ivo M. Baltruschat, René Werner, Alexander Schlaefer:
Skin Lesion Classification Using CNNs With Patch-Based Attention and Diagnosis-Guided Loss Weighting. IEEE Trans. Biomed. Eng. 67(2): 495-503 (2020) - [c55]Fatemeh Hadaeghi, Björn-Philipp Diercks, Insa M. A. Wolf, René Werner:
Reservoir Computing for Jurkat T-cell Segmentation in High Resolution Live Cell Ca2+ Fluorescence Microscopy. ISBI 2020: 1587-1591 - [c54]Ivo M. Baltruschat, Patryk Szwargulski, Florian Griese, Mirco Grosser, René Werner, Tobias Knopp:
3d-SMRnet: Achieving a New Quality of MPI System Matrix Recovery by Deep Learning. MICCAI (2) 2020: 74-82 - [c53]Maximilian Nielsen, Moritz Waldmann, Thilo Sentker, Andreas Frölich, Jens Fiehler, René Werner:
Time Matters: Handling Spatio-Temporal Perfusion Information for Automated TICI Scoring. MICCAI (6) 2020: 86-96 - [c52]Frederic Madesta, Rüdiger Schmitz, Thomas Rösch, René Werner:
Widening the Focus: Biomedical Image Segmentation Challenges and the Underestimated Role of Patch Sampling and Inference Strategies. MICCAI (4) 2020: 289-298
2010 – 2019
- 2019
- [c51]Maximilian Nielsen, Moritz Waldmann, Andreas Frölich, Jens Fiehler, René Werner:
Machbarkeitsstudie zur CNN-basierten Identifikation und TICI-Klassifizierung zerebraler ischämischer Infarkte in DSA-Daten. Bildverarbeitung für die Medizin 2019: 200-205 - [c50]René Werner, Dominik Weller, Johannes M. Salamon, Martin Möddel, Tobias Knopp:
Toward employing the full potential of magnetic particle imaging: exploring visualization techniques and clinical use cases for real-time 3D vascular imaging. Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging 2019: 109531V - [c49]Thilo Sentker, Frederic Madesta, René Werner:
Patient-specific 4D Monte Carlo dose accumulation using correspondence-model-based motion prediction. Medical Imaging: Image-Guided Procedures 2019: 1095109 - [c48]Frederic Madesta, Tobias Gauer, Thilo Sentker, René Werner:
Self-consistent deep learning-based boosting of 4D cone-beam computed tomography reconstruction. Medical Imaging: Image Processing 2019: 1094902 - [i5]Nils Gessert, Thilo Sentker, Frederic Madesta, Rüdiger Schmitz, Helge Kniep, Ivo M. Baltruschat, René Werner, Alexander Schlaefer:
Skin Lesion Classification Using CNNs with Patch-Based Attention and Diagnosis-Guided Loss Weighting. CoRR abs/1905.02793 (2019) - [i4]Ivo Matteo Baltruschat, Patryk Szwargulski, Florian Griese, Mirco Grosser, René Werner, Tobias Knopp:
3d-SMRnet: Achieving a new quality of MPI system matrix recovery by deep learning. CoRR abs/1905.03026 (2019) - [i3]Rüdiger Schmitz, Frederic Madesta, Maximilian Nielsen, René Werner, Thomas Rösch:
Multi-scale fully convolutional neural networks for histopathology image segmentation: from nuclear aberrations to the global tissue architecture. CoRR abs/1909.10726 (2019) - [i2]Nils Gessert, Maximilian Nielsen, Mohsin Shaikh, René Werner, Alexander Schlaefer:
Skin Lesion Classification Using Ensembles of Multi-Resolution EfficientNets with Meta Data. CoRR abs/1910.03910 (2019) - 2018
- [c47]Nik Mogadas, Thilo Sothmann, René Werner:
Einfluss nicht-rigider Bildregistrierung auf 4D-Dosissimulation bei extrakranieller SBRT. Bildverarbeitung für die Medizin 2018: 188-193 - [c46]Lasse Böhme, Frederic Madesta, Thilo Sentker, René Werner:
Combining Good Old Random Forest and DeepLabv3+ for ISLES 2018 CT-Based Stroke Segmentation. BrainLes@MICCAI (1) 2018: 335-342 - [c45]Thilo Sentker, Frederic Madesta, René Werner:
GDL-FIRE ^\text 4D : Deep Learning-Based Fast 4D CT Image Registration. MICCAI (1) 2018: 765-773 - [c44]Thilo Sothmann, Tobias Gauer, René Werner:
Influence of 4D CT motion artifacts on correspondence model-based 4D dose accumulation. Medical Imaging: Image-Guided Procedures 2018: 105760F - [c43]Eike Mücke, Heinz Handels, René Werner:
Self-reference-based and during-registration detection of motion artifacts in spatio-temporal image data. Medical Imaging: Image Processing 2018: 105740Q - [i1]Nils Gessert, Thilo Sentker, Frederic Madesta, Rüdiger Schmitz, Helge Kniep, Ivo M. Baltruschat, René Werner, Alexander Schlaefer:
Skin Lesion Diagnosis using Ensembles, Unscaled Multi-Crop Evaluation and Loss Weighting. CoRR abs/1808.01694 (2018) - 2017
- [c42]René Werner, Daniel Schetelig, Thilo Sothmann, Eike Mücke, Matthias Wilms, Bastian Cheng, Nils Daniel Forkert:
Low Rank and Sparse Matrix Decomposition as Stroke Segmentation Prior: Useful or Not? A Random Forest-Based Evaluation Study. Bildverarbeitung für die Medizin 2017: 161-166 - [c41]Daniel Schetelig, Jan Sedlacik, Felix Schmidt, Jens Fiehler, René Werner:
Defining Restrictions and Limits of Registration-Based Quantification of Geometric Deformation in Cerebral Blood Vessels. Bildverarbeitung für die Medizin 2017: 191-196 - [c40]Sven-Thomas Antoni, Omar M. F. Ismail, Daniel Schetelig, Björn-Philipp Diercks, René Werner, Insa M. A. Wolf, Andreas H. Guse, Alexander Schlaefer:
Systematic Analysis of Jurkat T-Cell Deformation in Fluorescence Microscopy Data. Bildverarbeitung für die Medizin 2017: 275-280 - 2016
- [c39]Franziska Werner, Caroline Jung, Martin Hofmann, Johannes Salamon, René Werner, Dennis Säring, Michael G. Kaul, Kolja Them, Oliver M. Weber, Tobias Mummert, Gerhard Adam, Harald Ittrich, Tobias Knopp:
Geometrieplanung und Bildregistrierung mittels bimodaler Fiducial-Marker für Magnetic Particle Imaging. Bildverarbeitung für die Medizin 2016: 128-133 - [c38]Daniel Schetelig, Dennis Säring, Till Illies, Jan Sedlacik, Fabian Kording, René Werner:
Phantom-based ground-truth generation for cerebral vessel segmentation and pulsatile deformation analysis. Medical Imaging: Image-Guided Procedures 2016: 978622 - [c37]René Werner, Matthias Wilms, Bastian Cheng, Nils Daniel Forkert:
Beyond cost function masking: RPCA-based non-linear registration in the context of VLSM. PRNI 2016: 1-4 - 2015
- [c36]Jan Ehrhardt, Alexander Schmidt-Richberg, René Werner, Heinz Handels:
Variational Registration. Bildverarbeitung für die Medizin 2015: 209-214 - [c35]Daniel Schetelig, Insa M. A. Wolf, Björn-Philipp Diercks, Ralf Fliegert, Andreas H. Guse, Alexander Schlaefer, René Werner:
A Modular Framework for Post-Processing and Analysis of Fluorescence Microscopy Image Sequences of Subcellular Calcium Dynamics. Bildverarbeitung für die Medizin 2015: 401-406 - [c34]René Werner, Tobias Gauer:
Reference geometry-based detection of (4D-)CT motion artifacts: a feasibility study. Medical Imaging: Image Processing 2015: 94130S - 2014
- [j6]Mirko Marx, Jan Ehrhardt, René Werner, Heinz-Peter Schlemmer, Heinz Handels:
Simulation of spatiotemporal CT data sets using a 4D MRI-based lung motion model. Int. J. Comput. Assist. Radiol. Surg. 9(3): 401-409 (2014) - [c33]Jonas Ortmüller, Matthias Wilms, René Werner, Heinz Handels:
Kombination von Atemsignalen zur Optimierung der Prädiktion komplexer atmungsbedingter Organ- und Tumorbewegungen. Bildverarbeitung für die Medizin 2014: 72-77 - [c32]Matthias Wilms, Jan Ehrhardt, René Werner, Mirko Marx, Heinz Handels:
Statistical analysis of surrogate signals to incorporate respiratory motion variability into radiotherapy treatment planning. Medical Imaging: Image-Guided Procedures 2014: 90360J - 2013
- [c31]Mirko Marx, Jan Ehrhardt, René Werner, Heinz-Peter Schlemmer, Heinz Handels:
4D-MRT-basierte Simulation der Lungenbewegung in statischen CT-Daten. Bildverarbeitung für die Medizin 2013: 134-139 - [c30]Maximilian Blendowski, Matthias Wilms, René Werner, Heinz Handels:
Simulation und Evaluation tiefenbildgebender Verfahren zur Prädiktion atmungsbedingter Organ- und Tumorbewegungen. Bildverarbeitung für die Medizin 2013: 350-355 - [c29]Hamidreza Mirzaei, Lisa Tang, René Werner, Ghassan Hamarneh:
Decision Forests with Spatio-Temporal Features for Graph-Based Tumor Segmentation in 4D Lung CT. MLMI 2013: 179-186 - [c28]René Werner, Christine Duscha, Alexander Schmidt-Richberg, Jan Ehrhardt, Heinz Handels:
Assessing accuracy of non-linear registration in 4D image data using automatically detected landmark correspondences. Medical Imaging: Image Processing 2013: 86690Z - [c27]Matthias Wilms, René Werner, Jan Ehrhardt, Alexander Schmidt-Richberg, Maximilian Blendowski, Heinz Handels:
Surrogate-based diffeomorphic motion estimation for radiation therapy: comparison of multivariate regression approaches. Medical Imaging: Image Processing 2013: 866915 - [c26]Simon Hermann, René Werner:
High Accuracy Optical Flow for 3D Medical Image Registration Using the Census Cost Function. PSIVT 2013: 23-35 - [c25]Simon Hermann, René Werner:
TV-L1-Based 3D Medical Image Registration with the Census Cost Function. PSIVT 2013: 149-161 - 2012
- [b1]René Werner:
Bewegungsfeldschätzung und Dosisakkumulation anhand von 4D-Bilddaten für die Strahlentherapie atmungsbewegter Tumoren. University of Lübeck, 2012, pp. 1-228 - [j5]Alexander Schmidt-Richberg, René Werner, Heinz Handels, Jan Ehrhardt:
Estimation of slipping organ motion by registration with direction-dependent regularization. Medical Image Anal. 16(1): 150-159 (2012) - [c24]Alexander Schmidt-Richberg, Jan Ehrhardt, Matthias Wilms, René Werner, Heinz Handels:
Evaluation of Algorithms for Lung Fissure Segmentation in CT Images. Bildverarbeitung für die Medizin 2012: 201-206 - [c23]Santiago Suniaga, René Werner, Andre Kemmling, Michael Groth, Jens Fiehler, Nils Daniel Forkert:
Automatische Detektion von Aneurysmen in 3D Time-of-Flight Magnetresonanzangiographie Datensätzen. GI-Jahrestagung 2012: 1738-1744 - [c22]Christine Duscha, René Werner, Alexander Schmidt-Richberg, Heinz Handels:
Evaluation von Differentialoperatoren zur Detektion anatomischer Landmarken in thorakalen und abdominalen tomographischen Bilddaten. GI-Jahrestagung 2012: 1755-1763 - [c21]René Werner, Jan Ehrhardt, Alexander Schmidt-Richberg, Matthias Wilms, Maximilian Blendowski, Heinz Handels:
A Diffeomorphic Framework for Surrogate-based Motion Estimation in Radiation Therapy: Concept and First Evaluation. GI-Jahrestagung 2012: 1774-1785 - [c20]Santiago Suniaga, René Werner, Andre Kemmling, Michael Groth, Jens Fiehler, Nils Daniel Forkert:
Computer-Aided Detection of Aneurysms in 3D Time-of-Flight MRA Datasets. MLMI 2012: 63-69 - [c19]Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Heinz Handels:
Lung Registration with Improved Fissure Alignment by Integration of Pulmonary Lobe Segmentation. MICCAI (2) 2012: 74-81 - [c18]René Werner, Jan Ehrhardt, Alexander Schmidt-Richberg, Heinz Handels:
Model-based risk assessment for motion effects in 3D radiotherapy of lung tumors. Medical Imaging: Image-Guided Procedures 2012: 83160C - [c17]Alexander Schmidt-Richberg, Jan Ehrhardt, Matthias Wilms, René Werner, Heinz Handels:
Pulmonary lobe segmentation with level sets. Medical Imaging: Image Processing 2012: 83142V - [c16]Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Heinz Handels:
Fast Explicit Diffusion for Registration with Direction-Dependent Regularization. WBIR 2012: 220-228 - 2011
- [j4]Jan Ehrhardt, René Werner, Alexander Schmidt-Richberg, Heinz Handels:
Statistical Modeling of 4D Respiratory Lung Motion Using Diffeomorphic Image Registration. IEEE Trans. Medical Imaging 30(2): 251-265 (2011) - [j3]Keelin Murphy, Bram van Ginneken, Joseph M. Reinhardt, Sven Kabus, Kai Ding, Xiang Deng, Kunlin Cao, Kaifang Du, Gary E. Christensen, Vincent Garcia, Tom Vercauteren, Nicholas Ayache, Olivier Commowick, Grégoire Malandain, Ben Glocker, Nikos Paragios, Nassir Navab, Vladlena Gorbunova, Jon Sporring, Marleen de Bruijne, Xiao Han, Mattias P. Heinrich, Julia A. Schnabel, Mark Jenkinson, Cristian Lorenz, Marc Modat, Jamie McClelland, Sébastien Ourselin, Sascha E. A. Muenzing, Max A. Viergever, Dante De Nigris, D. Louis Collins, Tal Arbel, Marta Peroni, Rui Li, Gregory C. Sharp, Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Dirk Smeets, Dirk Loeckx, Gang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee, Marius Staring, Stefan Klein, Berend C. Stoel, Martin Urschler, Manuel Werlberger, Jef Vandemeulebroucke, Simon Rit, David Sarrut, Josien P. W. Pluim:
Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge. IEEE Trans. Medical Imaging 30(11): 1901-1920 (2011) - [c15]Jan-Christoph Wolf, Alexander Schmidt-Richberg, René Werner, Jan Ehrhardt, Heinz Handels:
Optimierung nicht-linearer Registrierung durch automatisch detektierte Landmarken. Bildverarbeitung für die Medizin 2011: 89-93 - [c14]Alexander Schmidt-Richberg, René Werner, Jan Ehrhardt, Jan-Christoph Wolf, Heinz Handels:
Landmark-driven parameter optimization for non-linear image registration. Medical Imaging: Image Processing 2011: 79620T - 2010
- [j2]René Werner, Jan Ehrhardt, Alexander Schmidt-Richberg, Anabell Heiß, Heinz Handels:
Estimation of motion fields by non-linear registration for local lung motion analysis in 4D CT image data. Int. J. Comput. Assist. Radiol. Surg. 5(6): 595-605 (2010) - [c13]René Werner, Jan-Christoph Wolf, Jan Ehrhardt, Alexander Schmidt-Richberg, Heinz Handels:
Automatische Landmarkendetektion und -übertragung zur Evaluation der Registrierung von thorakalen CT-Daten. Bildverarbeitung für die Medizin 2010: 31-35 - [c12]Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Heinz Handels:
Direction-dependent regularization for improved estimation of liver and lung motion in 4D image data. Medical Imaging: Image Processing 2010: 76232Y - [c11]Jan Ehrhardt, René Werner, Alexander Schmidt-Richberg, Heinz Handels:
A statistical shape and motion model for the prediction of respiratory lung motion. Medical Imaging: Image Processing 2010: 762353
2000 – 2009
- 2009
- [c10]René Werner, Jan Ehrhardt, Alexander Schmidt-Richberg, Florian Cremers, Heinz Handels:
Estimation of Inner Lung Motion Fields by Non-linear Registration. Bildverarbeitung für die Medizin 2009: 102-106 - [c9]Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Heinz Handels:
Integrierte Segmentierung und Trajektorienberechnung mittels diffeomorpher Registrierung in räumlich-zeitlichen CT-Bildfolgen. Bildverarbeitung für die Medizin 2009: 182-186 - [c8]Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Heinz Handels:
Slipping Objects in Image Registration: Improved Motion Field Estimation with Direction-Dependent Regularization. MICCAI (1) 2009: 755-762 - [c7]René Werner, Jan Ehrhardt, Alexander Schmidt-Richberg, Heinz Handels:
Validation and comparison of a biophysical modeling approach and non-linear registration for estimation of lung motion fields in thoracic 4D CT data. Medical Imaging: Image Processing 2009: 72590U - 2008
- [c6]René Werner, Jan Ehrhardt, Rainer Schmidt, Heinz Handels:
Finite-Element-Modellierung von respiratorischen Lungenbewegungen als elastizitätstheoretisches Kontaktproblem zur Bewegungsschätzung in 4D-CT-Daten. Bildverarbeitung für die Medizin 2008: 112-116 - [c5]Jan Ehrhardt, René Werner, Alexander Schmidt-Richberg, Benny Schulz, Heinz Handels:
Generation of a Mean Motion Model of the Lung Using 4D-CT Image Data. VCBM 2008: 69-76 - 2007
- [j1]Heinz Handels, René Werner, Rainer Schmidt, Thorsten Frenzel, Wei Lu, Daniel Low, Jan Ehrhardt:
4D medical image computing and visualization of lung tumor mobility in spatio-temporal CT image data. Int. J. Medical Informatics 76(S3): S433-S439 (2007) - [c4]Jan Ehrhardt, René Werner, Thorsten Frenzel, Wei Lu, Daniel Low, Heinz Handels:
Analysis of free breathing motion using artifact reduced 4D CT image data. Medical Imaging: Image Processing 2007: 65121N - 2006
- [c3]René Werner, Jan Ehrhardt, Thorsten Frenzel, Dennis Säring, Daniel Low, Heinz Handels:
Rekonstruktion von 4D-CT-Daten aus räumlich-zeitlichen CT-Segmentfolgen zur Analyse atmungsbedingter Organbewegungen. Bildverarbeitung für die Medizin 2006: 6-10 - [c2]Heinz Handels, René Werner, Thorsten Frenzel, Dennis Säring, Wei Lu, Daniel Low, Jan Ehrhardt:
Generation of 4D CT Image Data and Analysis of Lung Tumour Mobility during the Breathing Cycle. MIE 2006: 977-982 - [c1]Jan Ehrhardt, René Werner, Thorsten Frenzel, Dennis Säring, Wei Lu, Daniel Low, Heinz Handels:
Reconstruction of 4D-CT data sets acquired during free breathing for the analysis of respiratory motion. Medical Imaging: Image Processing 2006: 614414
Coauthor Index
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