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dblp: Andreas Hildebrandt https://dblp.org/pid/39/2195.html dblp person page RSS feed Mon, 07 Oct 2024 21:21:09 +0200 en-US daily 1 released under the CC0 1.0 license dblp@dagstuhl.de (dblp team) dblp@dagstuhl.de (dblp team) Computers/Computer_Science/Publications/Bibliographies http://www.rssboard.org/rss-specification https://dblp.org/img/logo.144x51.pngdblp: Andreas Hildebrandthttps://dblp.org/pid/39/2195.html14451 Ionmob: a Python package for prediction of peptide collisional cross-section values.https://doi.org/10.1093/bioinformatics/btad486, , , , , , , , , , :
Ionmob: a Python package for prediction of peptide collisional cross-section values. Bioinform. 39(9) ()]]>https://dblp.org/rec/journals/bioinformatics/TeschnerGDLABDMMTH23Fri, 01 Sep 2023 01:00:00 +0200 CUDA-accelerated protein electrostatics in linear space.https://doi.org/10.1016/j.jocs.2023.102022, , , :
CUDA-accelerated protein electrostatics in linear space. J. Comput. Sci. 70: 102022 ()]]>https://dblp.org/rec/journals/jocs/KemmerHSH23Thu, 01 Jun 2023 01:00:00 +0200 Locality-sensitive hashing enables efficient and scalable signal classification in high-throughput mass spectrometry raw data.https://doi.org/10.1186/s12859-022-04833-5, , , , , , :
Locality-sensitive hashing enables efficient and scalable signal classification in high-throughput mass spectrometry raw data. BMC Bioinform. 23(1): 287 ()]]>https://dblp.org/rec/journals/bmcbi/BobTKGTSH22Sat, 01 Jan 2022 00:00:00 +0100 CARE: context-aware sequencing read error correction.https://doi.org/10.1093/bioinformatics/btaa738, , :
CARE: context-aware sequencing read error correction. Bioinform. 37(7): 889-895 ()]]>https://dblp.org/rec/journals/bioinformatics/KallenbornHS21Fri, 01 Jan 2021 00:00:00 +0100 Automatic shape detection of ice crystals.https://doi.org/10.1016/j.jocs.2021.101429, , , , :
Automatic shape detection of ice crystals. J. Comput. Sci. 54: 101429 ()]]>https://dblp.org/rec/journals/jocs/GrulichWHWS21Fri, 01 Jan 2021 00:00:00 +0100 Learning Molecular Classes from Small Numbers of Positive Examples Using Graph Grammars.https://doi.org/10.1007/978-3-030-74432-8_1, , :
Learning Molecular Classes from Small Numbers of Positive Examples Using Graph Grammars. AlCoB : 3-15]]>https://dblp.org/rec/conf/alcob/Althaus0M21Fri, 01 Jan 2021 00:00:00 +0100 Privately Querying Privacy: Privacy Estimation with Guaranteed Privacy of User and Database Party.https://doi.org/10.1007/978-3-030-93043-1_4, , :
Privately Querying Privacy: Privacy Estimation with Guaranteed Privacy of User and Database Party. ALGOCLOUD : 56-72]]>https://dblp.org/rec/conf/algocloud/HildebrandtAH21Fri, 01 Jan 2021 00:00:00 +0100 A big data approach to metagenomics for all-food-sequencing.https://doi.org/10.1186/s12859-020-3429-6, , , , , , , , :
A big data approach to metagenomics for all-food-sequencing. BMC Bioinform. 21(1): 102 ()]]>https://dblp.org/rec/journals/bmcbi/KobusAMHPPHHS20Wed, 01 Jan 2020 00:00:00 +0100 AnySeq: A High Performance Sequence Alignment Library based on Partial Evaluation.https://doi.org/10.1109/IPDPS47924.2020.00109, , , , , , :
AnySeq: A High Performance Sequence Alignment Library based on Partial Evaluation. IPDPS : 1030-1040]]>https://dblp.org/rec/conf/ipps/MullerS0MLKH20Wed, 01 Jan 2020 00:00:00 +0100 AnySeq: A High Performance Sequence Alignment Library based on Partial Evaluation.https://arxiv.org/abs/2002.04561, , , , , , :
AnySeq: A High Performance Sequence Alignment Library based on Partial Evaluation. CoRR abs/2002.04561 ()]]>https://dblp.org/rec/journals/corr/abs-2002-04561Wed, 01 Jan 2020 00:00:00 +0100 Dedicated Bioinformatics Analysis Hardware.https://doi.org/10.1016/b978-0-12-809633-8.20186-6, :
Dedicated Bioinformatics Analysis Hardware. Encyclopedia of Bioinformatics and Computational Biology (2) : 1142-1150]]>https://dblp.org/rec/reference/bioinf/Schmidt019Tue, 01 Jan 2019 00:00:00 +0100 NESSie.jl - Efficient and intuitive finite element and boundary element methods for nonlocal protein electrostatics in the Julia language.https://doi.org/10.1016/j.jocs.2018.08.008, , :
NESSie.jl - Efficient and intuitive finite element and boundary element methods for nonlocal protein electrostatics in the Julia language. J. Comput. Sci. 28: 193-203 ()]]>https://dblp.org/rec/journals/jocs/KemmerRH18Mon, 01 Jan 2018 00:00:00 +0100 MetaCache: context-aware classification of metagenomic reads using minhashing.https://doi.org/10.1093/bioinformatics/btx520, , , , :
MetaCache: context-aware classification of metagenomic reads using minhashing. Bioinform. 33(23): 3740-3748 ()]]>https://dblp.org/rec/journals/bioinformatics/MullerHHHS17Sun, 01 Jan 2017 00:00:00 +0100 Graph Rewriting Based Search for Molecular Structures: Definitions, Algorithms, Hardness.https://doi.org/10.1007/978-3-319-74730-9_5, , :
Graph Rewriting Based Search for Molecular Structures: Definitions, Algorithms, Hardness. STAF Workshops : 43-59]]>https://dblp.org/rec/conf/staf/Althaus0M17Sun, 01 Jan 2017 00:00:00 +0100 rapidGSEA: Speeding up gene set enrichment analysis on multi-core CPUs and CUDA-enabled GPUs.https://doi.org/10.1186/s12859-016-1244-x, , :
rapidGSEA: Speeding up gene set enrichment analysis on multi-core CPUs and CUDA-enabled GPUs. BMC Bioinform. 17: 394 ()]]>https://dblp.org/rec/journals/bmcbi/HundtHS16Fri, 01 Jan 2016 00:00:00 +0100 CUDA-enabled hierarchical ward clustering of protein structures based on the nearest neighbour chain algorithm.https://doi.org/10.1177/1094342015597988, , , , :
CUDA-enabled hierarchical ward clustering of protein structures based on the nearest neighbour chain algorithm. Int. J. High Perform. Comput. Appl. 30(2): 200-211 ()]]>https://dblp.org/rec/journals/ijhpca/DangSHTH16Fri, 01 Jan 2016 00:00:00 +0100 ballaxy: web services for structural bioinformatics.https://doi.org/10.1093/bioinformatics/btu574, , , , , , , , , , , , :
ballaxy: web services for structural bioinformatics. Bioinform. 31(1): 121-122 ()]]>https://dblp.org/rec/journals/bioinformatics/HildebrandtSFG0NRSSTLKH15Thu, 01 Jan 2015 00:00:00 +0100 SKINK: a web server for string kernel based kink prediction in α-helices.https://doi.org/10.1093/bioinformatics/btu096, , , , , :
SKINK: a web server for string kernel based kink prediction in α-helices. Bioinform. 30(12): 1769-1770 ()]]>https://dblp.org/rec/journals/bioinformatics/SeifertLKMTH14Wed, 01 Jan 2014 00:00:00 +0100 Efficient computation of root mean square deviations under rigid transformations.https://doi.org/10.1002/jcc.23513, , , , , :
Efficient computation of root mean square deviations under rigid transformations. J. Comput. Chem. 35(10): 765-771 ()]]>https://dblp.org/rec/journals/jcc/HildebrandtDLLAH14Wed, 01 Jan 2014 00:00:00 +0100 Correction to On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking.https://doi.org/10.1021/ci5006788, , , :
Correction to On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking. J. Chem. Inf. Model. 54(12): 3453 ()]]>https://dblp.org/rec/journals/jcisd/DietzenZHL14Wed, 01 Jan 2014 00:00:00 +0100 A Greedy Algorithm for Hierarchical Complete Linkage Clustering.https://doi.org/10.1007/978-3-319-07953-0_2, , :
A Greedy Algorithm for Hierarchical Complete Linkage Clustering. AlCoB : 25-34]]>https://dblp.org/rec/conf/alcob/AlthausHH14Wed, 01 Jan 2014 00:00:00 +0100 Algorithms for the Maximum Weight Connected k -Induced Subgraph Problem.https://doi.org/10.1007/978-3-319-12691-3_21, , , , :
Algorithms for the Maximum Weight Connected k -Induced Subgraph Problem. COCOA : 268-282]]>https://dblp.org/rec/conf/cocoa/AlthausBDHK14Wed, 01 Jan 2014 00:00:00 +0100 Parallelized Clustering of Protein Structures on CUDA-Enabled GPUs.https://doi.org/10.1109/PDP.2014.9, , , :
Parallelized Clustering of Protein Structures on CUDA-Enabled GPUs. PDP : 1-8]]>https://dblp.org/rec/conf/pdp/DangSHH14Wed, 01 Jan 2014 00:00:00 +0100 NightShift: NMR Shift Inference by General Hybrid Model Training - a Framework for NMR Chemical Shift Prediction.https://doi.org/10.1186/1471-2105-14-98, , , :
NightShift: NMR Shift Inference by General Hybrid Model Training - a Framework for NMR Chemical Shift Prediction. BMC Bioinform. 14: 98 ()]]>https://dblp.org/rec/journals/bmcbi/DehofLLH13Tue, 01 Jan 2013 00:00:00 +0100 CellLineNavigator: a workbench for cancer cell line analysis.https://doi.org/10.1093/nar/gks1012, , , , , :
CellLineNavigator: a workbench for cancer cell line analysis. Nucleic Acids Res. 41(Database-Issue): 942-948 ()]]>https://dblp.org/rec/journals/nar/KruppIMHGT13Tue, 01 Jan 2013 00:00:00 +0100 PresentaBALL - A powerful package for presentations and lessons in structural biology.https://doi.org/10.1109/BioVis.2013.6664344, , , , , :
PresentaBALL - A powerful package for presentations and lessons in structural biology. BioVis : 33-40]]>https://dblp.org/rec/conf/biovis/NickelsSMLHD13Tue, 01 Jan 2013 00:00:00 +0100 Efficient Interpretation of Tandem Mass Tags in Top-Down Proteomics.https://doi.org/10.4230/OASIcs.GCB.2013.56, , , , , :
Efficient Interpretation of Tandem Mass Tags in Top-Down Proteomics. GCB : 56-67]]>https://dblp.org/rec/conf/gcb/HildebrandtALHTH13Tue, 01 Jan 2013 00:00:00 +0100 Isotope pattern deconvolution for peptide mass spectrometry by non-negative least squares/least absolute deviation template matching.https://doi.org/10.1186/1471-2105-13-291, , , , , , :
Isotope pattern deconvolution for peptide mass spectrometry by non-negative least squares/least absolute deviation template matching. BMC Bioinform. 13: 291 ()]]>https://dblp.org/rec/journals/bmcbi/SlawskiHTJGHH12Sun, 01 Jan 2012 00:00:00 +0100 On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking.https://doi.org/10.1021/ci2004847, , , :
On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking. J. Chem. Inf. Model. 52(3): 844-856 ()]]>https://dblp.org/rec/journals/jcisd/DietzenZHL12Sun, 01 Jan 2012 00:00:00 +0100 ProteinScanAR - An Augmented Reality Web Application for High School Education in Biomolecular Life Sciences.https://doi.org/10.1109/IV.2012.97, , , , , , :
ProteinScanAR - An Augmented Reality Web Application for High School Education in Biomolecular Life Sciences. IV : 578-583]]>https://dblp.org/rec/conf/iv/NickelsSMKDLH12Sun, 01 Jan 2012 00:00:00 +0100 A dynamic program analysis to find floating-point accuracy problems.https://doi.org/10.1145/2254064.2254118, , :
A dynamic program analysis to find floating-point accuracy problems. PLDI : 453-462]]>https://dblp.org/rec/conf/pldi/BenzHH12Sun, 01 Jan 2012 00:00:00 +0100 Automated bond order assignment as an optimization problem.https://doi.org/10.1093/bioinformatics/btq718, , , , , :
Automated bond order assignment as an optimization problem. Bioinform. 27(5): 619-625 ()]]>https://dblp.org/rec/journals/bioinformatics/DehofRBBLH11Sat, 01 Jan 2011 00:00:00 +0100 String Kernels and High-Quality Data Set for Improved Prediction of Kinked Helices in α-Helical Membrane Proteins.https://doi.org/10.1021/ci200278w, , , :
String Kernels and High-Quality Data Set for Improved Prediction of Kinked Helices in α-Helical Membrane Proteins. J. Chem. Inf. Model. 51(11): 3017-3025 ()]]>https://dblp.org/rec/journals/jcisd/KneisslMTH11Sat, 01 Jan 2011 00:00:00 +0100 A fast solver for nonlocal electrostatic theory in biomolecular science and engineering.https://doi.org/10.1145/2024724.2024904, :
A fast solver for nonlocal electrostatic theory in biomolecular science and engineering. DAC : 801-805]]>https://dblp.org/rec/conf/dac/BardhanH11Sat, 01 Jan 2011 00:00:00 +0100 BALL - biochemical algorithms library 1.3.https://doi.org/10.1186/1471-2105-11-531, , , , , , , , , , , :
BALL - biochemical algorithms library 1.3. BMC Bioinform. 11: 531 ()]]>https://dblp.org/rec/journals/bmcbi/HildebrandtDRBSTMSNMLK10Fri, 01 Jan 2010 00:00:00 +0100 A new numerical method for nonlocal electrostatics in biomolecular simulations.https://doi.org/10.1016/j.jcp.2010.01.040, , :
A new numerical method for nonlocal electrostatics in biomolecular simulations. J. Comput. Phys. 229(11): 4059-4074 ()]]>https://dblp.org/rec/journals/jcphy/WegglerRH10Fri, 01 Jan 2010 00:00:00 +0100 Measuring properties of molecular surfaces using ray casting.https://doi.org/10.1109/IPDPSW.2010.5470898, , , , , , , :
Measuring properties of molecular surfaces using ray casting. IPDPS Workshops : 1-7]]>https://dblp.org/rec/conf/ipps/PhillipsGDNMLHS10Fri, 01 Jan 2010 00:00:00 +0100 Real-Time Ray Tracing of Complex Molecular Scenes.https://doi.org/10.1109/IV.2010.43, , , , , :
Real-Time Ray Tracing of Complex Molecular Scenes. IV : 239-245]]>https://dblp.org/rec/conf/iv/MarsalekDGLSH10Fri, 01 Jan 2010 00:00:00 +0100 A Novel Three-Dimensional Collaborative Online Platform for Bio-molecular Modeling.https://doi.org/10.1007/978-3-642-13544-6_5, , , :
A Novel Three-Dimensional Collaborative Online Platform for Bio-molecular Modeling. Smart Graphics : 44-55]]>https://dblp.org/rec/conf/sg/GajanananNHP10Fri, 01 Jan 2010 00:00:00 +0100 Signal Processing in Proteomics.https://doi.org/10.1007/978-1-60761-444-9_11, :
Signal Processing in Proteomics. Proteome Bioinformatics : 145-161]]>https://dblp.org/rec/books/daglib/p/HussongH10Fri, 01 Jan 2010 00:00:00 +0100 Highly accelerated feature detection in proteomics data sets using modern graphics processing units.https://doi.org/10.1093/bioinformatics/btp294, , , :
Highly accelerated feature detection in proteomics data sets using modern graphics processing units. Bioinform. 25(15): 1937-1943 ()]]>https://dblp.org/rec/journals/bioinformatics/HussongGTH09Thu, 01 Jan 2009 00:00:00 +0100 A consensus line search algorithm for molecular potential energy functions.https://doi.org/10.1002/jcc.21175, , :
A consensus line search algorithm for molecular potential energy functions. J. Comput. Chem. 30(9): 1499-1509 ()]]>https://dblp.org/rec/journals/jcc/RurainskiHL09Thu, 01 Jan 2009 00:00:00 +0100 Automated Bond Order Assignment as an Optimization Problem.https://dl.gi.de/handle/20.500.12116/20304, , , :
Automated Bond Order Assignment as an Optimization Problem. GCB : 201-209]]>https://dblp.org/rec/conf/gcb/DehofRLH09Thu, 01 Jan 2009 00:00:00 +0100 OpenMS - An open-source software framework for mass spectrometry.https://doi.org/10.1186/1471-2105-9-163, , , , , , , , , , :
OpenMS - An open-source software framework for mass spectrometry. BMC Bioinform. 9 ()]]>https://dblp.org/rec/journals/bmcbi/SturmBGHHLPSZRK08Tue, 01 Jan 2008 00:00:00 +0100 Computational Quantification of Peptides from LC-MS Data.https://doi.org/10.1089/cmb.2007.0117, , , , , , :
Computational Quantification of Peptides from LC-MS Data. J. Comput. Biol. 15(7): 685-704 ()]]>https://dblp.org/rec/journals/jcb/Schulz-TrieglaffHGLHHR08Tue, 01 Jan 2008 00:00:00 +0100 Electrostatic potentials of proteins in water: a structured continuum approach.https://doi.org/10.1093/bioinformatics/btl312, , , , :
Electrostatic potentials of proteins in water: a structured continuum approach. Bioinform. 23(2): 99-103 ()]]>https://dblp.org/rec/journals/bioinformatics/HildebrandtBRKL07Mon, 01 Jan 2007 00:00:00 +0100 A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data.https://doi.org/10.1007/978-3-540-71681-5_33, , , , :
A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data. RECOMB : 473-487]]>https://dblp.org/rec/conf/recomb/Schulz-TrieglaffHGHR07Mon, 01 Jan 2007 00:00:00 +0100 BALLView: a tool for research and education in molecular modeling.https://doi.org/10.1093/bioinformatics/bti818, , , :
BALLView: a tool for research and education in molecular modeling. Bioinform. 22(3): 365-366 ()]]>https://dblp.org/rec/journals/bioinformatics/MollHLK06Sun, 01 Jan 2006 00:00:00 +0100 A minimally invasive multiple marker approach allows highly efficient detection of meningioma tumors.https://doi.org/10.1186/1471-2105-7-539, , , , , :
A minimally invasive multiple marker approach allows highly efficient detection of meningioma tumors. BMC Bioinform. 7: 539 ()]]>https://dblp.org/rec/journals/bmcbi/KellerLCHML06Sun, 01 Jan 2006 00:00:00 +0100 BN++ - A Biological Information System.https://doi.org/10.2390/biecoll-jib-2006-34, , , , , , , :
BN++ - A Biological Information System. J. Integr. Bioinform. 3(2) ()]]>https://dblp.org/rec/journals/jib/KuntzerBGBHKKL06Sun, 01 Jan 2006 00:00:00 +0100 High-Accuracy Peak Picking of Proteomics Data Using Wavelet Techniques.http://psb.stanford.edu/psb-online/proceedings/psb06/lange.pdf, , , , :
High-Accuracy Peak Picking of Proteomics Data Using Wavelet Techniques. Pacific Symposium on Biocomputing : 243-254]]>https://dblp.org/rec/conf/psb/LangeGRKH06Sun, 01 Jan 2006 00:00:00 +0100 BALLView: An object-oriented molecular visualization and modeling framework.https://doi.org/10.1007/s10822-005-9027-x, , , :
BALLView: An object-oriented molecular visualization and modeling framework. J. Comput. Aided Mol. Des. 19(11): 791-800 ()]]>https://dblp.org/rec/journals/jcamd/MollHLK05Sat, 01 Jan 2005 00:00:00 +0100 High-accuracy peak picking of proteomics data.http://drops.dagstuhl.de/opus/volltexte/2006/535, , , :
High-accuracy peak picking of proteomics data. Computational Proteomics ]]>https://dblp.org/rec/conf/dagstuhl/LangeGKH05Sat, 01 Jan 2005 00:00:00 +0100 Glycosylation Patterns of Proteins Studied by Liquid Chromatography-Mass Spectrometry and Bioinformatic Tools.http://drops.dagstuhl.de/opus/volltexte/2006/543, , , , , , :
Glycosylation Patterns of Proteins Studied by Liquid Chromatography-Mass Spectrometry and Bioinformatic Tools. Computational Proteomics ]]>https://dblp.org/rec/conf/dagstuhl/TollBHHOLH05Sat, 01 Jan 2005 00:00:00 +0100 A NMR-spectra-based scoring function for protein docking.https://doi.org/10.1145/369133.369194, , , , , :
A NMR-spectra-based scoring function for protein docking. RECOMB : 184-192]]>https://dblp.org/rec/conf/recomb/KohlbacherBMHBL01Mon, 01 Jan 2001 00:00:00 +0100