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ORCIDAndreas Hildebrandt 0001
Person information
- affiliation: Johannes Gutenberg University Mainz, Germany
- affiliation (former): Saarland University, Saarbrücken, Germany
Other persons with the same name
- Andreas Hildebrandt 0002 — Pepperl+Fuchs GmbH, Mannheim, Germany
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2020 – today
- 2023
[j31]David Teschner
, David Gomez-Zepeda, Arthur Declercq, Mateusz K. Lacki, Seymen Avci, Konstantin Bob, Ute Distler, Thomas Michna, Lennart Martens, Stefan Tenzer, Andreas Hildebrandt:
Ionmob: a Python package for prediction of peptide collisional cross-section values. Bioinform. 39(9) (2023)- [j30]Thomas Kemmer, Sebastian Hack, Bertil Schmidt, Andreas Hildebrandt:
CUDA-accelerated protein electrostatics in linear space. J. Comput. Sci. 70: 102022 (2023) - 2022
- [j29]Konstantin Bob, David Teschner, Thomas Kemmer, David Gomez-Zepeda, Stefan Tenzer, Bertil Schmidt, Andreas Hildebrandt:
Locality-sensitive hashing enables efficient and scalable signal classification in high-throughput mass spectrometry raw data. BMC Bioinform. 23(1): 287 (2022) - 2021
- [j28]Felix Kallenborn, Andreas Hildebrandt, Bertil Schmidt:
CARE: context-aware sequencing read error correction. Bioinform. 37(7): 889-895 (2021) - [j27]Lucas Grulich, Ralf Weigel, Andreas Hildebrandt, Michael Wand, Peter Spichtinger:
Automatic shape detection of ice crystals. J. Comput. Sci. 54: 101429 (2021) - [c19]Ernst Althaus, Andreas Hildebrandt, Domenico Mosca:
Learning Molecular Classes from Small Numbers of Positive Examples Using Graph Grammars. AlCoB 2021: 3-15 - [c18]Anna Katharina Hildebrandt, Ernst Althaus, Andreas Hildebrandt:
Privately Querying Privacy: Privacy Estimation with Guaranteed Privacy of User and Database Party. ALGOCLOUD 2021: 56-72 - 2020
- [j26]Robin Kobus, José Manuel Abuín, André Müller, Sören Lukas Hellmann, Juan Carlos Pichel, Tomás F. Pena, Andreas Hildebrandt, Thomas Hankeln, Bertil Schmidt:
A big data approach to metagenomics for all-food-sequencing. BMC Bioinform. 21(1): 102 (2020) - [c17]André Müller, Bertil Schmidt, Andreas Hildebrandt, Richard Membarth, Roland Leißa, Matthis Kruse, Sebastian Hack:
AnySeq: A High Performance Sequence Alignment Library based on Partial Evaluation. IPDPS 2020: 1030-1040 - [i3]André Müller, Bertil Schmidt, Andreas Hildebrandt, Richard Membarth, Roland Leißa, Matthis Kruse, Sebastian Hack:
AnySeq: A High Performance Sequence Alignment Library based on Partial Evaluation. CoRR abs/2002.04561 (2020)
2010 – 2019
- 2019
- [r1]Bertil Schmidt, Andreas Hildebrandt:
Dedicated Bioinformatics Analysis Hardware. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 1142-1150 - 2018
- [j25]Thomas Kemmer, Sergej Rjasanow, Andreas Hildebrandt:
NESSie.jl - Efficient and intuitive finite element and boundary element methods for nonlocal protein electrostatics in the Julia language. J. Comput. Sci. 28: 193-203 (2018) - 2017
- [j24]André Müller, Christian Hundt, Andreas Hildebrandt, Thomas Hankeln, Bertil Schmidt:
MetaCache: context-aware classification of metagenomic reads using minhashing. Bioinform. 33(23): 3740-3748 (2017) - [c16]Ernst Althaus, Andreas Hildebrandt, Domenico Mosca:
Graph Rewriting Based Search for Molecular Structures: Definitions, Algorithms, Hardness. STAF Workshops 2017: 43-59 - 2016
- [j23]Christian Hundt, Andreas Hildebrandt, Bertil Schmidt:
rapidGSEA: Speeding up gene set enrichment analysis on multi-core CPUs and CUDA-enabled GPUs. BMC Bioinform. 17: 394 (2016) - [j22]Hoang-Vu Dang, Bertil Schmidt, Andreas Hildebrandt, Tuan Tu Tran, Anna Katharina Hildebrandt:
CUDA-enabled hierarchical ward clustering of protein structures based on the nearest neighbour chain algorithm. Int. J. High Perform. Comput. Appl. 30(2): 200-211 (2016) - 2015
- [j21]Anna Katharina Hildebrandt, Daniel Stöckel, Nina M. Fischer, Luis de la Garza, Jens Krüger, Stefan Nickels, Marc Röttig, Charlotta Schärfe, Marcel Schumann, Philipp Thiel, Hans-Peter Lenhof, Oliver Kohlbacher, Andreas Hildebrandt:
ballaxy: web services for structural bioinformatics. Bioinform. 31(1): 121-122 (2015) - 2014
- [j20]Tim Seifert, Andreas Lund, Benny Kneissl, Sabine C. Mueller, Christofer S. Tautermann, Andreas Hildebrandt:
SKINK: a web server for string kernel based kink prediction in α-helices. Bioinform. 30(12): 1769-1770 (2014) - [j19]Anna Katharina Hildebrandt, Matthias Dietzen, Thomas Lengauer, Hans-Peter Lenhof, Ernst Althaus, Andreas Hildebrandt:
Efficient computation of root mean square deviations under rigid transformations. J. Comput. Chem. 35(10): 765-771 (2014) - [j18]Matthias Dietzen, Elena Zotenko, Andreas Hildebrandt, Thomas Lengauer:
Correction to On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking. J. Chem. Inf. Model. 54(12): 3453 (2014) - [c15]Ernst Althaus, Andreas Hildebrandt, Anna Katharina Hildebrandt:
A Greedy Algorithm for Hierarchical Complete Linkage Clustering. AlCoB 2014: 25-34 - [c14]Ernst Althaus, Markus Blumenstock, Alexej Disterhoft, Andreas Hildebrandt, Markus Krupp:
Algorithms for the Maximum Weight Connected k -Induced Subgraph Problem. COCOA 2014: 268-282 - [c13]Hoang-Vu Dang, Bertil Schmidt, Andreas Hildebrandt, Anna Katharina Hildebrandt:
Parallelized Clustering of Protein Structures on CUDA-Enabled GPUs. PDP 2014: 1-8 - 2013
- [j17]Anna Katharina Dehof, Simon Loew, Hans-Peter Lenhof, Andreas Hildebrandt:
NightShift: NMR Shift Inference by General Hybrid Model Training - a Framework for NMR Chemical Shift Prediction. BMC Bioinform. 14: 98 (2013) - [j16]Markus Krupp, Timo Itzel, Thorsten Maass, Andreas Hildebrandt, Peter R. Galle, Andreas Teufel:
CellLineNavigator: a workbench for cancer cell line analysis. Nucleic Acids Res. 41(Database-Issue): 942-948 (2013) - [c12]Stefan Nickels, Daniel Stöckel, Sabine C. Mueller, Hans-Peter Lenhof, Andreas Hildebrandt, Anna Katharina Dehof:
PresentaBALL - A powerful package for presentations and lessons in structural biology. BioVis 2013: 33-40 - [c11]Anna Katharina Hildebrandt, Ernst Althaus, Hans-Peter Lenhof, Chien-Wen Hung, Andreas Tholey, Andreas Hildebrandt:
Efficient Interpretation of Tandem Mass Tags in Top-Down Proteomics. GCB 2013: 56-67 - 2012
- [j15]Martin Slawski, Rene Hussong, Andreas Tholey, Thomas Jakoby, Barbara Gregorius, Andreas Hildebrandt, Matthias Hein:
Isotope pattern deconvolution for peptide mass spectrometry by non-negative least squares/least absolute deviation template matching. BMC Bioinform. 13: 291 (2012) - [j14]Matthias Dietzen, Elena Zotenko, Andreas Hildebrandt, Thomas Lengauer:
On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking. J. Chem. Inf. Model. 52(3): 844-856 (2012) - [c10]Stefan Nickels, Hienke Sminia, Sabine C. Mueller, Bas Kools, Anna Katharina Dehof, Hans-Peter Lenhof, Andreas Hildebrandt:
ProteinScanAR - An Augmented Reality Web Application for High School Education in Biomolecular Life Sciences. IV 2012: 578-583 - [c9]Florian Benz, Andreas Hildebrandt, Sebastian Hack:
A dynamic program analysis to find floating-point accuracy problems. PLDI 2012: 453-462 - 2011
- [j13]Anna Katharina Dehof, Alexander Rurainski, Quang Bao Anh Bui, Sebastian Böcker, Hans-Peter Lenhof, Andreas Hildebrandt:
Automated bond order assignment as an optimization problem. Bioinform. 27(5): 619-625 (2011) - [j12]Benny Kneissl, Sabine C. Mueller, Christofer S. Tautermann, Andreas Hildebrandt:
String Kernels and High-Quality Data Set for Improved Prediction of Kinked Helices in α-Helical Membrane Proteins. J. Chem. Inf. Model. 51(11): 3017-3025 (2011) - [c8]Jaydeep P. Bardhan, Andreas Hildebrandt:
A fast solver for nonlocal electrostatic theory in biomolecular science and engineering. DAC 2011: 801-805 - 2010
- [j11]Andreas Hildebrandt, Anna Katharina Dehof, Alexander Rurainski, Andreas Bertsch, Marcel Schumann, Nora C. Toussaint, Andreas Moll, Daniel Stöckel, Stefan Nickels, Sabine C. Mueller, Hans-Peter Lenhof, Oliver Kohlbacher:
BALL - biochemical algorithms library 1.3. BMC Bioinform. 11: 531 (2010) - [j10]Sophie Weggler, V. Rutka, Andreas Hildebrandt:
A new numerical method for nonlocal electrostatics in biomolecular simulations. J. Comput. Phys. 229(11): 4059-4074 (2010) - [c7]Mike Phillips, Iliyan Georgiev, Anna Katharina Dehof, Stefan Nickels, Lukas Marsalek, Hans-Peter Lenhof, Andreas Hildebrandt, Philipp Slusallek:
Measuring properties of molecular surfaces using ray casting. IPDPS Workshops 2010: 1-7 - [c6]Lukas Marsalek, Anna Katharina Dehof, Iliyan Georgiev, Hans-Peter Lenhof, Philipp Slusallek, Andreas Hildebrandt:
Real-Time Ray Tracing of Complex Molecular Scenes. IV 2010: 239-245 - [c5]Kugamoorthy Gajananan, Arturo Nakasone, Andreas Hildebrandt, Helmut Prendinger:
A Novel Three-Dimensional Collaborative Online Platform for Bio-molecular Modeling. Smart Graphics 2010: 44-55 - [p1]Rene Hussong, Andreas Hildebrandt:
Signal Processing in Proteomics. Proteome Bioinformatics 2010: 145-161
2000 – 2009
- 2009
- [j9]Rene Hussong, Barbara Gregorius, Andreas Tholey, Andreas Hildebrandt:
Highly accelerated feature detection in proteomics data sets using modern graphics processing units. Bioinform. 25(15): 1937-1943 (2009) - [j8]Alexander Rurainski, Andreas Hildebrandt, Hans-Peter Lenhof:
A consensus line search algorithm for molecular potential energy functions. J. Comput. Chem. 30(9): 1499-1509 (2009) - [c4]Anna Katharina Dehof, Alexander Rurainski, Hans-Peter Lenhof, Andreas Hildebrandt:
Automated Bond Order Assignment as an Optimization Problem. GCB 2009: 201-209 - 2008
- [j7]Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, Oliver Kohlbacher:
OpenMS - An open-source software framework for mass spectrometry. BMC Bioinform. 9 (2008) - [j6]Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Leinenbach, Andreas Hildebrandt, Christian G. Huber, Knut Reinert:
Computational Quantification of Peptides from LC-MS Data. J. Comput. Biol. 15(7): 685-704 (2008) - 2007
- [j5]Andreas Hildebrandt, Ralf Blossey, Sergej Rjasanow, Oliver Kohlbacher, Hans-Peter Lenhof:
Electrostatic potentials of proteins in water: a structured continuum approach. Bioinform. 23(2): 99-103 (2007) - [c3]Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebrandt, Knut Reinert:
A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data. RECOMB 2007: 473-487 - 2006
- [j4]Andreas Moll, Andreas Hildebrandt, Hans-Peter Lenhof, Oliver Kohlbacher:
BALLView: a tool for research and education in molecular modeling. Bioinform. 22(3): 365-366 (2006) - [j3]Andreas Keller, Nicole Ludwig, Nicole Comtesse, Andreas Hildebrandt, Eckart Meese, Hans-Peter Lenhof:
A minimally invasive multiple marker approach allows highly efficient detection of meningioma tumors. BMC Bioinform. 7: 539 (2006) - [j2]Jan Küntzer, Torsten Blum, Andreas Gerasch, Christina Backes, Andreas Hildebrandt, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof:
BN++ - A Biological Information System. J. Integr. Bioinform. 3(2) (2006) - [c2]Eva Lange, Clemens Gröpl, Knut Reinert, Oliver Kohlbacher, Andreas Hildebrandt:
High-Accuracy Peak Picking of Proteomics Data Using Wavelet Techniques. Pacific Symposium on Biocomputing 2006: 243-254 - 2005
- [j1]Andreas Moll, Andreas Hildebrandt, Hans-Peter Lenhof, Oliver Kohlbacher:
BALLView: An object-oriented molecular visualization and modeling framework. J. Comput. Aided Mol. Des. 19(11): 791-800 (2005) - [i2]Eva Lange, Clemens Gröpl, Oliver Kohlbacher, Andreas Hildebrandt:
High-accuracy peak picking of proteomics data. Computational Proteomics 2005 - [i1]Hansjörg Toll, Peter Berger, Andreas Hofmann, Andreas Hildebrandt, Herbert Oberacher, Hans-Peter Lenhof, Christian G. Huber:
Glycosylation Patterns of Proteins Studied by Liquid Chromatography-Mass Spectrometry and Bioinformatic Tools. Computational Proteomics 2005 - 2001
- [c1]Oliver Kohlbacher, Andreas Burchardt, Andreas Moll, Andreas Hildebrandt, Peter Bayer, Hans-Peter Lenhof:
A NMR-spectra-based scoring function for protein docking. RECOMB 2001: 184-192
Coauthor Index
aka: Anna Katharina Dehof
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