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2020 – today
- 2024
[c44]Weiting Gao
, Xiangyu Gao, Wenjin Chen, David J. Foran, Yi Chen:
BioReX: Biomarker Information Extraction Inspired by Aspect-Based Sentiment Analysis. PKDD (4) 2024: 129-141- [i8]Betina Idnay, Zihan Xu, William G. Adams, Mohammad Adibuzzaman, Nicholas R. Anderson, Neil Bahroos, Douglas S. Bell, Cody Bumgardner, Thomas R. Campion Jr., Victor M. Castro, James J. Cimino, I. Glenn Cohen, David A. Dorr, Peter L. Elkin, Jungwei W. Fan, Todd Ferris, David J. Foran, David A. Hanauer, Mike Hogarth, Kun Huang, Jayashree Kalpathy-Cramer, Manoj Kandpal, Niranjan S. Karnik, Avnish Katoch, Albert M. Lai, Christophe G. Lambert, Lang Li, Christopher Lindsell, Jinze Liu, Zhiyong Lu, Yuan Luo, Peter McGarvey, Eneida A. Mendonça, Parsa Mirhaji, Shawn N. Murphy, John D. Osborne, Ioannis Ch. Paschalidis, Paul A. Harris, Fred W. Prior, Nicholas J. Shaheen, Nawar Shara, Ida Sim, Umberto Tachinardi, Lemuel R. Waitman, Rosalind J. Wright, Adrian H. Zai, Kai Zheng, Sandra Soo-Jin Lee, Bradley A. Malin, Karthik Natarajan, W. Nicholson Price, Rui Zhang, Yiye Zhang, Hua Xu, Jiang Bian, Chunhua Weng, Yifan Peng:
Environment Scan of Generative AI Infrastructure for Clinical and Translational Science. CoRR abs/2410.12793 (2024) - 2023
- [i7]Xiao Qi, David J. Foran, John L. Nosher, Ilker Hacihaliloglu:
Multi-Scale Feature Fusion using Parallel-Attention Block for COVID-19 Chest X-ray Diagnosis. CoRR abs/2304.12988 (2023) - 2022
- [c43]Xiao Qi, David J. Foran, John L. Nosher, Ilker Hacihaliloglu:
Multi-Feature Vision Transformer via Self-Supervised Representation Learning for Improvement of COVID-19 Diagnosis. MILLanD@MICCAI 2022: 76-85 - [i6]Xiao Qi, David J. Foran, John L. Nosher, Ilker Hacihaliloglu:
Multi-Feature Vision Transformer via Self-Supervised Representation Learning for Improvement of COVID-19 Diagnosis. CoRR abs/2208.01843 (2022) - 2021
- [j26]Xiao Qi, Lloyd G. Brown, David J. Foran, John L. Nosher, Ilker Hacihaliloglu:
Chest X-ray image phase features for improved diagnosis of COVID-19 using convolutional neural network. Int. J. Comput. Assist. Radiol. Surg. 16(2): 197-206 (2021) - [j25]Hui Che, Lloyd G. Brown, David J. Foran, John L. Nosher, Ilker Hacihaliloglu:
Liver disease classification from ultrasound using multi-scale CNN. Int. J. Comput. Assist. Radiol. Surg. 16(9): 1537-1548 (2021) - [c42]Xiao Qi, David J. Foran, John L. Nosher, Ilker Hacihaliloglu:
Multi-Feature Semi-Supervised Learning for COVID-19 Diagnosis from Chest X-Ray Images. MLMI@MICCAI 2021: 151-160 - [c41]Hui Che, Sumana Ramanathan, David J. Foran, John L. Nosher, Vishal M. Patel, Ilker Hacihaliloglu:
Realistic Ultrasound Image Synthesis for Improved Classification of Liver Disease. ASMUS@MICCAI 2021: 179-188 - [i5]Hui Che, Sumana Ramanathan, David J. Foran, John L. Nosher, Vishal M. Patel, Ilker Hacihaliloglu:
Realistic Ultrasound Image Synthesis for Improved Classification of Liver Disease. CoRR abs/2107.12775 (2021) - 2020
- [j24]Andreas S. Panayides, Amir A. Amini, Nenad D. Filipovic, Ashish Sharma, Sotirios A. Tsaftaris, Alistair A. Young, David J. Foran, Nhan Do, Spyretta Golemati, Tahsin M. Kurç, Kun Huang, Konstantina S. Nikita, Ben P. Veasey, Michalis E. Zervakis, Joel H. Saltz, Constantinos S. Pattichis:
AI in Medical Imaging Informatics: Current Challenges and Future Directions. IEEE J. Biomed. Health Informatics 24(7): 1837-1857 (2020) - [c40]Xiangyu Gao, Jinhe Shi, Wenjin Chen, Nancy Sazo, Huiqi Chu, Evita T. Sadimin, David J. Foran, Yi Chen:
CBEx: A Hybrid Approach for Cancer Biomarker Extraction. BIBM 2020: 2958 - [i4]Xiao Qi, Lloyd G. Brown, David J. Foran, Ilker Hacihaliloglu:
Chest X-ray Image Phase Features for Improved Diagnosis of COVID-19 Using Convolutional Neural Network. CoRR abs/2011.03585 (2020)
2010 – 2019
- 2019
- [j23]Le Hou, Vu Nguyen, Ariel B. Kanevsky, Dimitris Samaras, Tahsin M. Kurç, Tianhao Zhao, Rajarsi R. Gupta, Yi Gao, Wenjin Chen, David J. Foran, Joel H. Saltz:
Sparse autoencoder for unsupervised nucleus detection and representation in histopathology images. Pattern Recognit. 86: 188-200 (2019) - [c39]Jian Ren, Zhe Li, Jianchao Yang, Ning Xu, Tianbao Yang, David J. Foran:
EIGEN: Ecologically-Inspired GENetic Approach for Neural Network Structure Searching From Scratch. CVPR 2019: 9059-9068 - 2018
- [j22]Kihan Park, Wenjin Chen, Marina A. Chekmareva, David J. Foran, Jaydev P. Desai:
Electromechanical Coupling Factor of Breast Tissue as a Biomarker for Breast Cancer. IEEE Trans. Biomed. Eng. 65(1): 96-103 (2018) - [c38]Jian Ren, Ilker Hacihaliloglu, Eric A. Singer, David J. Foran, Xin Qi:
Adversarial Domain Adaptation for Classification of Prostate Histopathology Whole-Slide Images. MICCAI (2) 2018: 201-209 - [i3]Jian Ren, Ilker Hacihaliloglu, Eric A. Singer, David J. Foran, Xin Qi:
Adversarial Domain Adaptation for Classification of Prostate Histopathology Whole-Slide Images. CoRR abs/1806.01357 (2018) - [i2]Jian Ren, Jianchao Yang, Ning Xu, David J. Foran:
Factorized Adversarial Networks for Unsupervised Domain Adaptation. CoRR abs/1806.01376 (2018) - [i1]Jian Ren, Zhe Li, Jianchao Yang, Ning Xu, Tianbao Yang, David J. Foran:
EIGEN: Ecologically-Inspired GENetic Approach for Neural Network Structure Searching. CoRR abs/1806.01940 (2018) - 2017
- [j21]Esma Yildirim, David J. Foran:
Parallel Versus Distributed Data Access for Gigapixel-Resolution Histology Images: Challenges and Opportunities. IEEE J. Biomed. Health Informatics 21(4): 1049-1057 (2017) - [c37]Jian Ren, Xiaohui Shen, Zhe L. Lin, Radomír Mech, David J. Foran:
Personalized Image Aesthetics. ICCV 2017: 638-647 - [c36]Daihou Wang, Eun-Sung Jung, Rajkumar Kettimuthu, Ian T. Foster, David J. Foran, Manish Parashar:
Supporting Real-Time Jobs on the IBM Blue Gene/Q: Simulation-Based Study. JSSPP 2017: 83-102 - [c35]Jian Ren, Evita T. Sadimin, David J. Foran, Xin Qi:
Computer aided analysis of prostate histopathology images to support a refined Gleason grading system. Medical Imaging: Image Processing 2017: 101331V - 2016
- [j20]Hardik J. Pandya, Kihan Park, Wenjin Chen, Lauri A. Goodell, David J. Foran, Jaydev P. Desai:
Toward a Portable Cancer Diagnostic Tool Using a Disposable MEMS-Based Biochip. IEEE Trans. Biomed. Eng. 63(7): 1347-1353 (2016) - [c34]Yan Wu, Emmanuel Zachariah, Judith Amorosa, Anjani Naidu, Mina L. Labib, Jamil Shaikh, Donna Eckstein, Sinae Kim, John E. Langenfeld, Joseph Aisner, John L. Nosher, Robert S. DiPaola, David J. Foran:
A Support Vector Machine based Prediction Model for Discrimination of Malignant Pulmonary Nodules from Benign Nodules. BIOIMAGING 2016: 129-133 - 2015
- [j19]Tahsin M. Kurç, Xin Qi, Daihou Wang, Fusheng Wang, George Teodoro, Lee A. D. Cooper, Michael Nalisnik, Lin Yang, Joel H. Saltz, David J. Foran:
Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies. BMC Bioinform. 16: 399:1-399:21 (2015) - [c33]Daihou Wang, David J. Foran, Jian Ren, Hua Zhong, Isaac Y. Kim, Xin Qi:
Exploring automatic prostate histopathology image gleason grading via local structure modeling. EMBC 2015: 2649-2652 - [c32]Jian Ren, Evita T. Sadimin, Daihou Wang, Jonathan I. Epstein, David J. Foran, Xin Qi:
Computer aided analysis of prostate histopathology images Gleason grading especially for Gleason score 7. EMBC 2015: 3013-3016 - [c31]Hai Su, Yong Shen, Fuyong Xing, Xin Qi, Kim M. Hirshfield, Lin Yang, David J. Foran:
Robust automatic breast cancer staging using a combination of functional genomics and image-omics. EMBC 2015: 7226-7229 - [c30]Daihou Wang, David J. Foran, Xin Qi, Manish Parashar:
HetroCV: Auto-tuning Framework and Runtime for Image Processing and Computer Vision Applications on Heterogeneous Platform. ICPP Workshops 2015: 119-128 - 2014
- [j18]Lin Yang, Xin Qi, Fuyong Xing, Tahsin M. Kurç, Joel H. Saltz, David J. Foran:
Parallel content-based sub-image retrieval using hierarchical searching. Bioinform. 30(7): 996-1002 (2014) - [j17]Xin Qi, Daihou Wang, Ivan Rodero, Javier Diaz Montes, Rebekah H. Gensure, Fuyong Xing, Hua Zhong, Lauri A. Goodell, Manish Parashar, David J. Foran, Lin Yang:
Content-based histopathology image retrieval using CometCloud. BMC Bioinform. 15: 287 (2014) - [j16]Rajarshi Roy, Wenjin Chen, Lei Cong, Lauri A. Goodell, David J. Foran, Jaydev P. Desai:
Probabilistic Estimation of Mechanical Properties of Biomaterials Using Atomic Force Microscopy. IEEE Trans. Biomed. Eng. 61(2): 547-556 (2014) - [c29]Mengsong Zou, Javier Diaz Montes, Ivan Rodero, Manish Parashar, Ioan Petri, Omer F. Rana, Xin Qi, David J. Foran:
Collaborative marketplaces for eScience: A medical imaging use case. CTS 2014: 500-506 - 2013
- [j15]Rajarshi Roy, Wenjin Chen, Lei Cong, Lauri A. Goodell, David J. Foran, Jaydev P. Desai:
A Semi-Automated Positioning System for Contact-Mode Atomic Force Microscopy (AFM). IEEE Trans Autom. Sci. Eng. 10(2): 462-465 (2013) - [c28]Xin Qi, Rebekah H. Gensure, David J. Foran, Lin Yang:
Content-based white blood cell retrieval on bright-field pathology images. Medical Imaging: Digital Pathology 2013: 86760L - 2012
- [j14]William J. Cukierski, Kaustav Nandy, Prabhakar R. Gudla, Karen J. Meaburn, Tom Misteli, David J. Foran, Stephen J. Lockett:
Ranked retrieval of segmented nuclei for objective assessment of cancer gene repositioning. BMC Bioinform. 13: 232 (2012) - [j13]Xin Qi, Fuyong Xing, David J. Foran, Lin Yang:
Robust Segmentation of Overlapping Cells in Histopathology Specimens Using Parallel Seed Detection and Repulsive Level Set. IEEE Trans. Biomed. Eng. 59(3): 754-765 (2012) - [c27]Fuyong Xing, Baiyang Liu, Xin Qi, David J. Foran, Lin Yang:
Digitized tissue microarray classification using sparse reconstruction. Medical Imaging: Image Processing 2012: 83144W - 2011
- [j12]David J. Foran, Lin Yang, Wenjin Chen, Jun Hu, Lauri A. Goodell, Michael Reiss, Fusheng Wang, Tahsin M. Kurç, Tony Pan, Ashish Sharma, Joel H. Saltz:
ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology. J. Am. Medical Informatics Assoc. 18(4): 403-415 (2011) - [c26]Baiyang Liu, Lin Yang, Casimir A. Kulikowski, Leiguang Gong, David J. Foran, Salma K. Jabbour, Ning J. Yue:
Dynamic online registration guided collaborative tracking of lung tumor movement in fluoroscopic videos. ISBI 2011: 414-418 - [c25]Xin Qi, Fuyong Xing, David J. Foran, Lin Yang:
Comparative performance analysis of stained histopathology specimens using RGB and multispectral imaging. Medical Imaging: Computer-Aided Diagnosis 2011: 79633B - 2010
- [c24]William J. Cukierski, David J. Foran:
Metamerism in multispectral imaging of histopathology specimens. ISBI 2010: 145-148 - [c23]Baiyang Liu, Lin Yang, Casimir A. Kulikowski, Jinghao Zhou, Leiguang Gong, David J. Foran, Salma J. Jabbour, Ning J. Yue:
An adaptive tracking algorithm of lung tumors in fluoroscopy using online learned collaborative trackers. ISBI 2010: 209-212 - [c22]Patrick M. Widener, Tahsin M. Kurç, Wenjin Chen, Fusheng Wang, Lin Yang, Jun Hu, Vijay Kumar, Vicky Chu, Lee A. D. Cooper, Jun Kong, Ashish Sharma, Tony Pan, Joel H. Saltz, David J. Foran:
High Performance Computing Techniques for Scaling Image Analysis Workflows. PARA (2) 2010: 67-77
2000 – 2009
- 2009
- [j11]Gabriela Niculescu, John L. Nosher, M. D. Benjamin Schneider, David J. Foran:
A deformable model for tracking tumors across consecutive imaging studies. Int. J. Comput. Assist. Radiol. Surg. 4(4): 337-347 (2009) - [j10]Lin Yang, Oncel Tuzel, Wenjin Chen, Peter Meer, Gratian Salaru, Lauri A. Goodell, David J. Foran:
PathMiner: A Web-Based Tool for Computer-Assisted Diagnostics in Pathology. IEEE Trans. Inf. Technol. Biomed. 13(3): 291-299 (2009) - [j9]Lin Yang, Wenjin Chen, Peter Meer, Gratian Salaru, Lauri A. Goodell, Viktors Berstis, David J. Foran:
Virtual Microscopy and Grid-Enabled Decision Support for Large-Scale Analysis of Imaged Pathology Specimens. IEEE Trans. Inf. Technol. Biomed. 13(4): 636-644 (2009) - [c21]Lin Yang, Leiguang Gong, Hong Zhang, John L. Nosher, David J. Foran:
A Parallel Point Matching Algorithm for Landmark Based Image Registration Using Multicore Platform. Euro-Par 2009: 936-947 - [c20]Hyunjoo Kim, Manish Parashar, David J. Foran, Lin Yang:
Investigating the use of autonomic cloudbursts for high-throughput medical image registration. GRID 2009: 34-41 - [c19]Hong Zhang, Lin Yang, David J. Foran, John L. Nosher, Peter J. Yim:
3D Segmentation of the Liver Using Free-Form Deformation Based on Boosting and Deformation Gradients. ISBI 2009: 494-497 - [c18]William J. Cukierski, Xin Qi, David J. Foran:
Moving Beyond Color: the Case for Multispectral Imaging in Brightfield Pathology. ISBI 2009: 1111-1114 - [c17]David J. Foran, Lin Yang, Oncel Tuzel, Wenjin Chen, Jun Hu, Tahsin M. Kurç, Renato Ferreira, Joel H. Saltz:
A caGrid-Enabled, Learning Based Image Segmentation Method for Histopathology Specimens. ISBI 2009: 1306-1309 - 2008
- [j8]Bonnie Hall, Monica Ianosi-Irimie, Parisa Javidian, Wenjin Chen, Shridar Ganesan, David J. Foran:
Computer-assisted assessment of the Human Epidermal Growth Factor Receptor 2 immunohistochemical assay in imaged histologic sections using a membrane isolation algorithm and quantitative analysis of positive controls. BMC Medical Imaging 8: 11 (2008) - [c16]William J. Cukierski, David J. Foran:
Using Betweenness Centrality to Identify Manifold Shortcuts. ICDM Workshops 2008: 949-958 - [c15]Lin Yang, Bogdan Georgescu, Yefeng Zheng, David J. Foran, Dorin Comaniciu:
A fast and accurate tracking algorithm of left ventricles in 3D echocardiography. ISBI 2008: 221-224 - [c14]Lin Yang, Oncel Tuzel, Peter Meer, David J. Foran:
Automatic Image Analysis of Histopathology Specimens Using Concave Vertex Graph. MICCAI (1) 2008: 833-841 - 2007
- [j7]Oncel Tuzel, Lin Yang, Peter Meer, David J. Foran:
Classification of hematologic malignancies using texton signatures. Pattern Anal. Appl. 10(4): 277-290 (2007) - [c13]Lin Yang, Peter Meer, David J. Foran:
Multiple Class Segmentation Using A Unified Framework over Mean-Shift Patches. CVPR 2007 - [c12]Lin Yang, David J. Foran:
A Variational Framework for Partially Occluded Image Segmentation using Coarse to Fine Shape Alignment and Semi-Parametric Density Approximation. ICIP (1) 2007: 37-40 - [c11]Bonnie Hall, Wenjin Chen, Michael Reiss, David J. Foran:
A Clinically Motivated 2-Fold Framework for Quantifying and Classifying Immunohistochemically Stained Specimens. MICCAI (2) 2007: 287-294 - [c10]Lin Yang, Wenjin Chen, Peter Meer, Gratian Salaru, Michael D. Feldman, David J. Foran:
High Throughput Analysis of Breast Cancer Specimens on the Grid. MICCAI (1) 2007: 617-625 - 2005
- [j6]Wenjin Chen, Peter Meer, Bogdan Georgescu, Wei He, Lauri A. Goodell, David J. Foran:
Image mining for investigative pathology using optimized feature extraction and data fusion. Comput. Methods Programs Biomed. 79(1): 59-72 (2005) - [j5]Lin Yang, Peter Meer, David J. Foran:
Unsupervised segmentation based on robust estimation and color active contour models. IEEE Trans. Inf. Technol. Biomed. 9(3): 475-486 (2005) - 2004
- [j4]Wenjin Chen, Michael Reiss, David J. Foran:
A Prototype for Unsupervised Analysis of Tissue Microarrays for Cancer Research and Diagnostics. IEEE Trans. Inf. Technol. Biomed. 8(2): 89-96 (2004) - [c9]Cristina Schmidt, Manish Parashar, Wenjin Chen, David J. Foran:
Engineering a Peer-to-Peer Collaboratory for Tissue Microarray Research. CLADE 2004: 64 - 2003
- [c8]Peter J. Yim, David J. Foran:
Volumetry of Hepatic Metastases in Computed Tomography Using the Watershed and Active Contour Algorithms. CBMS 2003: 329-335 - 2002
- [c7]Wenjin Chen, David J. Foran, Michael Reiss:
Unsupervised imaging, registration and archiving of tissue microarrays. AMIA 2002 - [c6]Gabriela Niculescu, Louay Toni, David J. Foran, John L. Nosher, Kevin J. DeMarco:
A Dynamic Imaging Database for 3-D Morphologic Analysis and Clinical Assessment in Diagnostic Radiology. AMIA 2002 - 2000
- [j3]David J. Foran, Dorin Comaniciu, Peter Meer, Lauri A. Goodell:
Computer-assisted discrimination among malignant lymphomas and leukemia using immunophenotyping, intelligent image repositories, and telemicroscopy. IEEE Trans. Inf. Technol. Biomed. 4(4): 265-273 (2000)
1990 – 1999
- 1999
- [j2]Dorin Comaniciu, Peter Meer, David J. Foran:
Image-guided decision support system for pathology. Mach. Vis. Appl. 11(4): 213-224 (1999) - [c5]Dorin Comaniciu, Bogdan Georgescu, Peter Meer, Wenjin Chen, David J. Foran:
Decision Support System for Multiuser Remote Microscopy in Telepathology. CBMS 1999: 150-155 - 1998
- [c4]Dorin Comaniciu, Peter Meer, David J. Foran:
Shape-based image indexing and retrieval for diagnostic pathology. ICPR 1998: 902-904 - [c3]Dorin Comaniciu, Peter Meer, David J. Foran, Attila Medl:
Bimodal system for interactive indexing and retrieval of pathology images. WACV 1998: 76-81 - [c2]Dorin Comaniciu, Peter Meer, David J. Foran, Attila Medl:
Bimodal system for interactive indexing and retrieval of pathology images. WACV 1998: 268-269 - 1997
- [j1]David J. Foran, Peter Meer, Thomas V. Papathomas, Ivan Marsic:
Compression guidelines for diagnostic telepathology. IEEE Trans. Inf. Technol. Biomed. 1(1): 55-60 (1997) - 1996
- [c1]David J. Foran, Peter Meer, Thomas V. Papathomas, Ivan Marsic, Leiguang Gong, Casimir A. Kulikowski, R. L. Trelstad:
Establishing perceptual criteria on image quality in diagnostic telepathology. ICIP (1) 1996: 873-876
Coauthor Index
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