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Bindu Nanduri Nisha Pillai Athish Ram Das Moses Ayoola Ganga Gireesan Bindu Nanduri Mahalingam Ramkumar EndToEndML: An Open-Source End-to-End Pipeline for Machine Learning Applications. 350-358 2024 ICICT https://doi.org/10.1109/ICICT62343.2024.00063 conf/icict2/2024 db/conf/icict2/icict2024.html#PillaiDAGNR24 Nisha Pillai Ganga Gireesan Michael J. Rothrock Bindu Nanduri Zhiqian Chen Mahalingam Ramkumar Towards Interpreting Multi-Objective Feature Associations. 1-8 2024 SysCon https://doi.org/10.1109/SysCon61195.2024.10553467 conf/syscon/2024 db/conf/syscon/syscon2024.html#PillaiGRNCR24
Ganga Gireesan Nisha Pillai Michael J. Rothrock Bindu Nanduri Zhiqian Chen Mahalingam Ramkumar Deep Sensitivity Analysis for Objective-Oriented Combinatorial Optimization. 2024 abs/2403.00016 CoRR https://doi.org/10.48550/arXiv.2403.00016 db/journals/corr/corr2403.html#abs-2403-00016
Nisha Pillai Ganga Gireesan Michael J. Rothrock Jr. Bindu Nanduri Zhiqian Chen Mahalingam Ramkumar Towards Interpreting Multi-Objective Feature Associations. 2024 abs/2403.00017 CoRR https://doi.org/10.48550/arXiv.2403.00017 db/journals/corr/corr2403.html#abs-2403-00017
Nisha Pillai Athish Ram Das Moses Ayoola Ganga Gireesan Bindu Nanduri Mahalingam Ramkumar EndToEndML: An Open-Source End-to-End Pipeline for Machine Learning Applications. 2024 abs/2403.18203 CoRR https://doi.org/10.48550/arXiv.2403.18203 db/journals/corr/corr2403.html#abs-2403-18203
Nisha Pillai Bindu Nanduri Michael J. Rothrock Jr. Zhiqian Chen Mahalingam Ramkumar Bayesian-Guided Generation of Synthetic Microbiomes with Minimized Pathogenicity. 2024 abs/2405.00070 CoRR https://doi.org/10.48550/arXiv.2405.00070 db/journals/corr/corr2405.html#abs-2405-00070
Nisha Pillai Bindu Nanduri Michael J. Rothrock Zhiqian Chen Mahalingam Ramkumar Towards Optimal Microbiome to Inhibit Multidrug Resistance. 1-9 2023 CIBCB https://doi.org/10.1109/CIBCB56990.2023.10264914 conf/cibcb/2023 db/conf/cibcb/cibcb2023.html#PillaiNRCR23
Tayo Obafemi-Ajayi Andy D. Perkins Bindu Nanduri Donald C. Wunsch II James A. Foster Joan Peckham No-boundary thinking: a viable solution to ethical data-driven AI in precision medicine. 635-643 2022 2 AI Ethics 4 https://doi.org/10.1007/s43681-021-00118-4 https://www.wikidata.org/entity/Q115142892 db/journals/aiethics/aiethics2.html#Obafemi-AjayiPN22
Ramin Homayouni Huixiao Hong Prashanti Manda Bindu Nanduri Inimary T. Toby Editorial: Unleashing Innovation on Precision Public Health-Highlights From the MCBIOS and MAQC 2021 Joint Conference. 859700 2022 5 Frontiers Artif. Intell. https://doi.org/10.3389/frai.2022.859700 db/journals/frai/frai5.html#HomayouniHMNT22
Jonathan D. Wren Robert J. Doerksen Inimary T. Toby Bindu Nanduri Ramin Homayouni Prashanti Manda Shraddha Thakkar Proceedings of the 2018 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) conference. 95:1-95:5 2019 20-S BMC Bioinform. 2 https://doi.org/10.1186/s12859-019-2618-7 https://www.wikidata.org/entity/Q64091911 db/journals/bmcbi/bmcbi20S.html#WrenDTNHMT19
Jonathan D. Wren Mikhail G. Dozmorov Inimary T. Toby Bindu Nanduri Ramin Homayouni Prashanti Manda Shraddha Thakkar Proceedings of the 2017 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. 498:1-498:5 2017 18 BMC Bioinform. 14 https://doi.org/10.1186/s12859-017-1887-2 https://www.wikidata.org/entity/Q47107648 db/journals/bmcbi/bmcbi18S.html#WrenDTNHMT17
Mais G. Ammari Cathy R. Gresham Fiona M. McCarthy Bindu Nanduri HPIDB 2.0: a curated database for host-pathogen interactions. 2016 2016 Database J. Biol. Databases Curation https://doi.org/10.1093/database/baw103 https://www.wikidata.org/entity/Q37060118 db/journals/biodb/biodb2016.html#AmmariGMN16
Jonathan D. Wren Inimary T. Toby Huxiao Hong Bindu Nanduri Rakesh Kaundal Mikhail G. Dozmorov Shraddha Thakkar Proceedings of the 2016 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. 356 2016 17 BMC Bioinform. S-13 https://doi.org/10.1186/s12859-016-1213-4 https://www.wikidata.org/entity/Q42381144 db/journals/bmcbi/bmcbi17S.html#WrenTHNKDT16
Xiuzhen Huang Steven F. Jennings Barry Bruce Alison Buchan Liming Cai Pengyin Chen Carole L. Cramer Weihua Guan Uwe Hilgert Hongmei Jiang Zenglu Li Gail McClure Donald F. McMullen Bindu Nanduri Andy D. Perkins Bhanu Rekepalli Saeed Salem Jennifer Specker Karl Walker Donald C. Wunsch Donghai Xiong Shuzhong Zhang Yu Zhang Zhongming Zhao Jason H. Moore Big data - a 21st century science Maginot Line? No-boundary thinking: shifting from the big data paradigm. 7 2015 8 BioData Min. https://doi.org/10.1186/s13040-015-0037-5 https://www.wikidata.org/entity/Q30891300 db/journals/biodatamining/biodatamining8.html#HuangJBBCCCGHJL15
Prashanti Manda Fiona M. McCarthy Bindu Nanduri Susan M. Bridges Information Theoretic Interestingness Measures for Cross-Ontology Data Mining in the Mouse Anatomy Ontology and the Gene Ontology. 2015 abs/1504.08027 CoRR http://arxiv.org/abs/1504.08027 db/journals/corr/corr1504.html#MandaMNB15
Xiuzhen Huang Barry Bruce Alison Buchan Clare Bates Congdon Carole L. Cramer Steven F. Jennings Hongmei Jiang Zenglu Li Gail McClure Rick McMullen Jason H. Moore Bindu Nanduri Joan Peckham Andy D. Perkins Shawn W. Polson Bhanu Rekepalli Saeed Salem Jennifer Specker Donald C. Wunsch Donghai Xiong Shuzhong Zhang Zhongming Zhao No-boundary thinking in bioinformatics research. 19 2013 6 BioData Min. https://doi.org/10.1186/1756-0381-6-19 https://www.wikidata.org/entity/Q37308031 db/journals/biodatamining/biodatamining6.html#HuangBBCCJJLMMMNPPPRSSWXZZ13
Tamer Aldwairi Bindu Nanduri Mahalingam Ramkumar Dilip Gautam Michael Johnson Andy D. Perkins Statistical Methods for Ambiguous Sequence Mappings. 674 2013 BCB https://doi.org/10.1145/2506583.2506678 conf/bcb/2013 db/conf/bcb/bcb2013.html#AldwairiNRGJP13
Joseph S. Reddy Ranjit Kumar James M. Watt Mark L. Lawrence Shane C. Burgess Bindu Nanduri Transcriptome profile of a bovine respiratory disease pathogen: Mannheimia haemolytica PHL213. S4 2012 13 BMC Bioinform. S-15 https://doi.org/10.1186/1471-2105-13-S15-S4 https://www.wikidata.org/entity/Q28727915 db/journals/bmcbi/bmcbi13S.html#ReddyKWLBN12
William S. Sanders Nan Wang 0002 Susan M. Bridges Brandon M. Malone Yoginder S. Dandass Fiona M. McCarthy Bindu Nanduri Mark L. Lawrence Shane C. Burgess The Proteogenomic Mapping Tool. 115 2011 12 BMC Bioinform. https://doi.org/10.1186/1471-2105-12-115 https://www.wikidata.org/entity/Q33879768 db/journals/bmcbi/bmcbi12.html#SandersWBMDMNLB11
Ranjit Kumar Shane C. Burgess Mark L. Lawrence Bindu Nanduri TAAPP: Tiling Array Analysis Pipeline for Prokaryotes. 56-62 2011 9 Genom. Proteom. Bioinform. 1-2 https://doi.org/10.1016/S1672-0229(11)60008-9 https://www.wikidata.org/entity/Q37318464 db/journals/gpb/gpb9.html#KumarBLN11
Ranjit Kumar Bindu Nanduri HPIDB - a unified resource for host-pathogen interactions. S16 2010 11 BMC Bioinform. S-6 https://doi.org/10.1186/1471-2105-11-S6-S16 https://www.wikidata.org/entity/Q30990369 db/journals/bmcbi/bmcbi11S.html#KumarN10
Prashanti Manda McKinley G. Freeman Susan M. Bridges T. J. Jankun-Kelly Bindu Nanduri Fiona M. McCarthy Shane C. Burgess GOModeler- A tool for hypothesis-testing of functional genomics datasets. S29 2010 11 BMC Bioinform. S-6 https://doi.org/10.1186/1471-2105-11-S6-S29 https://www.wikidata.org/entity/Q33718617 db/journals/bmcbi/bmcbi11S.html#MandaFBJNMB10
Mais G. Ammari Fiona M. McCarthy Bindu Nanduri Lesya M. Pinchuk Analysis of Bovine Viral Diarrhea Viruses-infected monocytes: identification of cytopathic and non-cytopathic biotype differences. S9 2010 11 BMC Bioinform. S-6 https://doi.org/10.1186/1471-2105-11-S6-S9 https://www.wikidata.org/entity/Q33718636 db/journals/bmcbi/bmcbi11S.html#AmmariMNP10
Bindu Nanduri Nan Wang 0002 Mark L. Lawrence Susan M. Bridges Shane C. Burgess Gene Model Detection Using Mass Spectrometry. 137-144 2010 Proteome Bioinformatics https://doi.org/10.1007/978-1-60761-444-9_10 https://www.wikidata.org/entity/Q51766634 books/daglib/0032063 db/books/collections/HJ2010.html#NanduriWLBB10
Ken Pendarvis Ranjit Kumar Shane C. Burgess Bindu Nanduri An automated proteomic data analysis workflow for mass spectrometry. 17 2009 10 BMC Bioinform. S-11 https://doi.org/10.1186/1471-2105-10-S11-S17 https://www.wikidata.org/entity/Q33509207 db/journals/bmcbi/bmcbi10S.html#PendarvisKBN09
Divyaswetha Peddinti Bindu Nanduri Abdullah Kaya Jean M. Feugang Shane C. Burgess Erdogan Memili Comprehensive proteomic analysis of bovine spermatozoa of varying fertility rates and identification of biomarkers associated with fertility. 19 2008 2 BMC Syst. Biol. https://doi.org/10.1186/1752-0509-2-19 https://www.wikidata.org/entity/Q33320889 db/journals/bmcsb/bmcsb2.html#PeddintiNKFBM08
Nan Wang 0002 Changhe Yuan Shane C. Burgess Bindu Nanduri Mark L. Lawrence Susan Bridges Integrating Evidence for Evaluation of Potential Novel Protein-coding Genes Using Bayesian Networks. 838-843 2008 BIOCOMP conf/biocomp/2008 db/conf/biocomp/biocomp2008.html#WangYBNLB08
Susan M. Bridges G. Bryce Magee Nan Wang 0002 W. Paul Williams Shane C. Burgess Bindu Nanduri ProtQuant: a tool for the label-free quantification of MudPIT proteomics data. 2007 8 BMC Bioinform. S-7 https://doi.org/10.1186/1471-2105-8-S7-S24 https://www.wikidata.org/entity/Q21284217 db/journals/bmcbi/bmcbi8S.html#BridgesMWWBN07
William S. Sanders Susan M. Bridges Fiona M. McCarthy Bindu Nanduri Shane C. Burgess Prediction of peptides observable by mass spectrometry applied at the experimental set level. 2007 8 BMC Bioinform. S-7 https://doi.org/10.1186/1471-2105-8-S7-S23 https://www.wikidata.org/entity/Q33307859 db/journals/bmcbi/bmcbi8S.html#SandersBMNB07
Bindu Nanduri Robert L. Eoff Alan J. Tackett Kevin D. Raney Measurement of steady-state kinetic parameters for DNA unwinding by the bacteriophage T4 Dda helicase: use of peptide nucleic acids to trap single-stranded DNA products of helicase reactions. 2829-2835 2001 29 Nucleic Acids Res. 13 db/journals/nar/nar29.html#NanduriETR01 https://doi.org/10.1093/nar/29.13.2829 https://www.wikidata.org/entity/Q33940320
Tamer Aldwairi Mais G. Ammari Moses Ayoola Susan M. BridgesSusan Bridges Barry Bruce Alison Buchan Shane C. Burgess Liming Cai Pengyin Chen Zhiqian Chen Clare Bates Congdon Carole L. Cramer Yoginder S. Dandass Athish Ram Das Robert J. Doerksen Mikhail G. Dozmorov Robert L. Eoff Jean M. Feugang James A. Foster McKinley G. Freeman Dilip Gautam Ganga Gireesan Cathy R. Gresham Weihua Guan Uwe Hilgert Ramin Homayouni Huixiao Hong Huxiao Hong Xiuzhen Huang T. J. Jankun-Kelly Steven F. Jennings Hongmei Jiang Michael Johnson Rakesh Kaundal Abdullah Kaya Ranjit Kumar Mark L. Lawrence Zenglu Li G. Bryce Magee Brandon M. Malone Prashanti Manda Fiona M. McCarthy Gail McClure Donald F. McMullen Rick McMullen Erdogan Memili Jason H. Moore Tayo Obafemi-Ajayi Joan Peckham Divyaswetha Peddinti Ken Pendarvis Andy D. Perkins Nisha Pillai Lesya M. Pinchuk Shawn W. Polson Mahalingam Ramkumar Kevin D. Raney Joseph S. Reddy Bhanu Rekepalli Michael J. Rothrock Michael J. Rothrock Jr. Saeed Salem William S. Sanders Jennifer Specker Alan J. Tackett Shraddha Thakkar Inimary T. Toby Karl Walker Nan Wang 0002 James M. Watt W. Paul Williams Jonathan D. Wren Donald C. Wunsch IIDonald C. Wunsch Donghai Xiong Changhe Yuan Shuzhong Zhang Yu Zhang Zhongming Zhao