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ORCIDTimothy M. D. Ebbels
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- affiliation: Imperial College London, UK
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2020 – today
- 2024
[j19]Melpomeni Kasapi
, Kexin Xu, Timothy M. D. Ebbels, Declan P. O'Regan, James S. Ware, Joram M. Posma:
LAVASET: Latent Variable Stochastic Ensemble of Trees. An ensemble method for correlated datasets with spatial, spectral, and temporal dependencies. Bioinform. 40(3) (2024)- [j18]Juliette Cooke, Maxime Delmas, Cecilia Wieder, Pablo Rodríguez-Mier, Clément Frainay, Florence Vinson, Timothy M. D. Ebbels, Nathalie Poupin, Fabien Jourdan:
Genome scale metabolic network modelling for metabolic profile predictions. PLoS Comput. Biol. 20(2) (2024) - [i4]Timothy M. D. Ebbels, Soha Hassoun, Ewy A. Mathé, Justin J. J. van der Hooft, Haley Chatelaine:
Computational Metabolomics: Towards Molecules, Models, and their Meaning (Dagstuhl Seminar 24181). Dagstuhl Reports 14(4): 124-141 (2024) - 2022
- [j17]Cecilia Wieder, Rachel P. J. Lai, Timothy M. D. Ebbels:
Single sample pathway analysis in metabolomics: performance evaluation and application. BMC Bioinform. 23(1): 481 (2022) - [i3]Corey Broeckling, Timothy M. D. Ebbels, Ewy A. Mathé, Nicola Zamboni, Cecilia Wieder:
Computational Metabolomics: From Spectra to Knowledge (Dagstuhl Seminar 22181). Dagstuhl Reports 12(5): 1-16 (2022) - 2021
- [j16]Alina Peluso, Robert C. Glen, Timothy M. D. Ebbels:
Multiple-testing correction in metabolome-wide association studies. BMC Bioinform. 22(1): 67 (2021) - [j15]Cecilia Wieder, Clément Frainay, Nathalie Poupin, Pablo Rodríguez-Mier, Florence Vinson, Juliette Cooke, Rachel P. J. Lai, Jacob G. Bundy, Fabien Jourdan, Timothy M. D. Ebbels:
Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis. PLoS Comput. Biol. 17(9) (2021) - 2020
- [j14]Chiung-Ting Wu, Yizhi Wang, Yinxue Wang, Timothy M. D. Ebbels, Ibrahim Karaman, Gonçalo Graça, Rui Pinto, David M. Herrington, Yue Wang, Guoqiang Yu:
Targeted realignment of LC-MS profiles by neighbor-wise compound-specific graphical time warping with misalignment detection. Bioinform. 36(9): 2862-2871 (2020) - [j13]Takoua Jendoubi, Timothy M. D. Ebbels:
Integrative analysis of time course metabolic data and biomarker discovery. BMC Bioinform. 21(1): 11 (2020)
2010 – 2019
- 2019
- [j12]Marcelo P. Segura-Lepe, Hector C. Keun, Timothy M. D. Ebbels:
Predictive modelling using pathway scores: robustness and significance of pathway collections. BMC Bioinform. 20(1): 543:1-543:11 (2019) - [i2]Jianliang Gao, Noureddin Sadawi, Ibrahim Karaman, Jake T. M. Pearce, Pablo A. Moreno, Anders Larsson, Marco Capuccini, Paul Elliott, Jeremy K. Nicholson, Timothy M. D. Ebbels, Robert C. Glen:
Metabolomics in the Cloud: Scaling Computational Tools to Big Data. CoRR abs/1904.02288 (2019) - 2017
- [i1]Merlijn N. van Rijswijk, Charlie Beirnaert, Christophe Caron, Marta Cascante, Victoria Dominguez Del Angel, Warwick B. Dunn, Timothy M. D. Ebbels, Franck Giacomoni, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Jose L. Izquierdo-García, Rafael C. Jiménez, Fabien Jourdan, Namrata Kale, Maria I. Klapa, Oliver Kohlbacher, Kairi Koort, Kim Kultima, Gildas Le Corguillé, Nicholas K. Moschonas, Steffen Neumann, Claire O'Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato, Reza M. Salek, Susanna-Assunta Sansone, Venkata P. Satagopam, Daniel Schober, Ruth Shimmo, Rachel A. Spicer, Ola Spjuth, Etienne A. Thévenot, Mark R. Viant, Ralf J. M. Weber, Egon L. Willighagen, Gianluigi Zanetti, Christoph Steinbeck:
The future of metabolomics in ELIXIR. F1000Research 6: 1649- (2017) - 2015
- [j11]Yotsawat Pomyen, Marcelo Segura, Timothy M. D. Ebbels, Hector C. Keun:
Over-representation of correlation analysis (ORCA): a method for identifying associations between variable sets. Bioinform. 31(1): 102-108 (2015) - [j10]Diana M. Hendrickx, Hugo J. W. L. Aerts, Florian Caiment, Dominic Clark, Timothy M. D. Ebbels, Chris T. A. Evelo, Hans Gmuender, Dennie G. A. J. Hebels, Ralf Herwig, Jürgen Hescheler, Danyel G. J. Jennen, Marlon J. A. Jetten, Stathis Kanterakis, Hector C. Keun, Vera Matser, John P. Overington, Ekaterina Pilicheva, Ugis Sarkans, Marcelo P. Segura-Lepe, Isaia Sotiriadou, Timo Wittenberger, Clemens Wittwehr, Antonella Zanzi, Jos C. S. Kleinjans:
diXa: a data infrastructure for chemical safety assessment. Bioinform. 31(9): 1505-1507 (2015) - 2012
- [j9]Jie Hao, William J. Astle, Maria De Iorio, Timothy M. D. Ebbels:
BATMAN - an R package for the automated quantification of metabolites from nuclear magnetic resonance spectra using a Bayesian model. Bioinform. 28(15): 2088-2090 (2012) - 2011
- [j8]Maurice Berk, Timothy M. D. Ebbels, Giovanni Montana:
A statistical framework for biomarker discovery in metabolomic time course data. Bioinform. 27(14): 1979-1985 (2011) - [j7]Atanas Kamburov, Rachel Cavill, Timothy M. D. Ebbels, Ralf Herwig, Hector C. Keun:
Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA. Bioinform. 27(20): 2917-2918 (2011) - [j6]Rachel Cavill, Atanas Kamburov, James K. Ellis, Toby J. Athersuch, Marcus S. C. Blagrove, Ralf Herwig, Timothy M. D. Ebbels, Hector C. Keun:
Consensus-Phenotype Integration of Transcriptomic and Metabolomic Data Implies a Role for Metabolism in the Chemosensitivity of Tumour Cells. PLoS Comput. Biol. 7(3) (2011) - 2010
- [j5]H. Paul Benton, Elizabeth J. Want, Timothy M. D. Ebbels:
Correction of mass calibration gaps in liquid chromatography-mass spectrometry metabolomics data. Bioinform. 26(19): 2488-2489 (2010) - [j4]Harriet J. Muncey, Rebecca Jones, Maria De Iorio, Timothy M. D. Ebbels:
MetAssimulo: Simulation of Realistic NMR Metabolic Profiles. BMC Bioinform. 11: 496 (2010) - [j3]Elizabeth Allen, Annick Moing, Timothy M. D. Ebbels, Mickaël Maucourt, A. Deri Tomos, Dominique Rolin, Mark A. Hooks:
Correlation Network Analysis reveals a sequential reorganization of metabolic and transcriptional states during germination and gene-metabolite relationships in developing seedlings of Arabidopsis. BMC Syst. Biol. 4: 62 (2010)
2000 – 2009
- 2009
- [j2]Rachel Cavill, Hector C. Keun, Elaine Holmes, John C. Lindon, Jeremy K. Nicholson, Timothy M. D. Ebbels:
Genetic algorithms for simultaneous variable and sample selection in metabonomics. Bioinform. 25(1): 112-118 (2009) - 2008
- [j1]Mattias Rantalainen, Olivier Cloarec, Timothy M. D. Ebbels, Torbjörn Lundstedt, Jeremy K. Nicholson, Elaine Holmes, Johan Trygg:
Piecewise multivariate modelling of sequential metabolic profiling data. BMC Bioinform. 9 (2008) - 2006
- [c1]Timothy M. D. Ebbels, Bernard F. Buxton, David T. Jones:
springScape: visualisation of microarray and contextual bioinformatic data using spring embedding and an "information landscape". ISMB (Supplement of Bioinformatics) 2006: 99-107
Coauthor Index
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