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ORCIDIsidore Rigoutsos
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2020 – today
- 2022
[j24]Nestoras Karathanasis
, Daniel Hwang, Vibol Heng, Rimal Abhimannyu, Phillip Slogoff-Sevilla, Gina Buchel, Victoria Frisbie, Peiyao Li, Dafni Kryoneriti, Isidore Rigoutsos:
Reproducibility efforts as a teaching tool: A pilot study. PLoS Comput. Biol. 18(11): 1010615 (2022)- 2021
- [j23]Phillipe Loher, Nestoras Karathanasis, Eric Londin, Paul F. Bray, Venetia Pliatsika, Aristeidis G. Telonis, Isidore Rigoutsos:
IsoMiRmap: fast, deterministic and exhaustive mining of isomiRs from short RNA-seq datasets. Bioinform. 37(13): 1828-1838 (2021) - 2020
- [j22]Thomas Desvignes, Phillipe Loher, Karen Eilbeck, Jeffery Ma, Gianvito Urgese, Bastian Fromm, Jason Sydes, Ernesto Aparicio-Puerta, Víctor Barrera, Roderic Espín, Florian Thibord, Xavier Bofill-De Ros, Eric Londin, Aristeidis G. Telonis, Elisa Ficarra, Marc R. Friedländer, John H. Postlethwait, Isidore Rigoutsos, Michael Hackenberg, Ioannis S. Vlachos, Marc K. Halushka, Lorena Pantano:
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API. Bioinform. 36(3): 698-703 (2020)
2010 – 2019
- 2018
- [j21]Venetia Pliatsika, Phillipe Loher, Rogan Magee, Aristeidis G. Telonis, Eric Londin, Megumi Shigematsu, Yohei Kirino, Isidore Rigoutsos:
MINTbase v2.0: a comprehensive database for tRNA-derived fragments that includes nuclear and mitochondrial fragments from all The Cancer Genome Atlas projects. Nucleic Acids Res. 46(Database-Issue): D152-D159 (2018) - 2017
- [j20]Rogan Magee, Phillipe Loher, Eric Londin, Isidore Rigoutsos:
Threshold-seq: a tool for determining the threshold in short RNA-seq datasets. Bioinform. 33(13): 2034-2036 (2017) - 2016
- [j19]Venetia Pliatsika, Phillipe Loher, Aristeidis G. Telonis, Isidore Rigoutsos:
MINTbase: a framework for the interactive exploration of mitochondrial and nuclear tRNA fragments. Bioinform. 32(16): 2481-2489 (2016) - [j18]Aristeidis G. Telonis, Phillipe Loher, Yohei Kirino, Isidore Rigoutsos:
Consequential considerations when mapping tRNA fragments. BMC Bioinform. 17: 123 (2016) - 2012
- [j17]Phillipe Loher, Isidore Rigoutsos:
Interactive exploration of RNA22 microRNA target predictions. Bioinform. 28(24): 3322-3323 (2012) - 2010
- [c17]Tien Huynh, Michail Vlachos, Isidore Rigoutsos:
Anchoring millions of distinct reads on the human genome within seconds. EDBT 2010: 252-262
2000 – 2009
- 2009
- [j16]Aristotelis Tsirigos, Isidore Rigoutsos:
Alu and B1 Repeats Have Been Selectively Retained in the Upstream and Intronic Regions of Genes of Specific Functional Classes. PLoS Comput. Biol. 5(12) (2009) - 2006
- [j15]Kyle L. Jensen, Mark P. Styczynski, Isidore Rigoutsos, Gregory Stephanopoulos:
A generic motif discovery algorithm for sequential data. Bioinform. 22(1): 21-28 (2006) - [j14]Irene M. Mullins, Mir S. Siadaty, Jason A. Lyman, Ken Scully, Carleton T. Garrett, W. Greg Miller, Rudy Muller, Barry Robson, Chid Apté, Sholom M. Weiss, Isidore Rigoutsos, Daniel E. Platt, Simona Cohen, William A. Knaus:
Data mining and clinical data repositories: Insights from a 667, 000 patient data set. Comput. Biol. Medicine 36(12): 1351-1377 (2006) - 2004
- [j13]Tien Huynh, Isidore Rigoutsos:
The web server of IBM's Bioinformatics and Pattern Discovery group: 2004 update. Nucleic Acids Res. 32(Web-Server-Issue): 10-15 (2004) - [j12]Mohammed Javeed Zaki, Shinichi Morishita, Isidore Rigoutsos:
Report on BIOKDD04: workshop on data mining in Bioinformatics. SIGKDD Explor. 6(2): 153-154 (2004) - [c16]Isidore Rigoutsos, Tien Huynh:
Chung-Kwei: a Pattern-discovery-based System for the Automatic Identification of Unsolicited E-mail Messages (SPAM). CEAS 2004 - [c15]Isidore Rigoutsos:
Of parts and relationships: an unending quest. CIKM 2004: 250 - [e1]Mohammed Javeed Zaki, Shinichi Morishita, Isidore Rigoutsos:
Proceedings of the 4th ACM SIGKDD Workshop on Data Mining in Bioinformatics (BIOKDD 2004), August 22th, 2004, Seattle, Washington, USA. 2004 [contents] - 2003
- [j11]Ioannis Iliopoulos, Sophia Tsoka, Miguel A. Andrade, Anton J. Enright, Mark Carroll, Patrick Poullet, Vasilis J. Promponas, Theodore Liakopoulos, Giorgos Palaios, Claude Pasquier, Stavros J. Hamodrakas, Javier Tamames, Asutosh T. Yagnik, Anna Tramontano, Damien Devos, Christian Blaschke, Alfonso Valencia, David Brett, David M. A. Martin, Christophe Leroy, Isidore Rigoutsos, Chris Sander, Christos A. Ouzounis:
Evaluation of annotation strategies using an entire genome sequence. Bioinform. 19(6): 717-726 (2003) - [j10]Tien Huynh, Isidore Rigoutsos, Laxmi Parida, Daniel E. Platt, Tetsuo Shibuya:
The web server of IBM's Bioinformatics and Pattern Discovery group. Nucleic Acids Res. 31(13): 3645-3650 (2003) - 2002
- [j9]Xiong Wang, Jason Tsong-Li Wang, Dennis E. Shasha, Bruce A. Shapiro, Isidore Rigoutsos, Kaizhong Zhang:
Finding Patterns in Three-Dimensional Graphs: Algorithms and Applications to Scientific Data Mining. IEEE Trans. Knowl. Data Eng. 14(4): 731-749 (2002) - 2001
- [j8]Aris Floratos, Isidore Rigoutsos, Laxmi Parida, Yuan Gao:
DELPHI: A pattern-based method for detecting sequence similarity. IBM J. Res. Dev. 45(3): 455-474 (2001) - [j7]Daniel E. Platt, Laxmi Parida, Yuan Gao, Aris Floratos, Isidore Rigoutsos:
QSAR in grossly underdetermined systems: Opportunities and issues. IBM J. Res. Dev. 45(3): 533-544 (2001) - [c14]Laxmi Parida, Isidore Rigoutsos, Daniel E. Platt:
An Output-Sensitive Flexible Pattern Discovery Algorithm. CPM 2001: 131-142 - 2000
- [c13]Aris Floratos, Igor Jurisica, Isidore Rigoutsos:
Knowledge discovery in biological domains (tutorial AM-3). KDD Tutorial Notes 2000: 95-163 - [c12]Laxmi Parida, Isidore Rigoutsos, Aris Floratos, Daniel E. Platt, Yuan Gao:
Pattern discovery on character sets and real-valued data: linear bound on irredundant motifs and an efficient polynomial time algorithm. SODA 2000: 297-308
1990 – 1999
- 1999
- [j6]Laxmi Parida, Aris Floratos, Isidore Rigoutsos:
An Approximation Algorithm for Alignment of Multiple Sequences using Motif Discovery. J. Comb. Optim. 3(2-3): 247-275 (1999) - [c11]Isidore Rigoutsos, Yuan Gao, Aris Floratos, Laxmi Parida:
Building Dictionaries of 1D and 3D Motifs by Mining the Unaligned 1D Sequences of 17 Archaeal and Bacterial Genomes. ISMB 1999: 223-233 - [c10]Aris Floratos, Isidore Rigoutsos, Laxmi Parida, Gustavo Stolovitzky, Yuan Gao:
Sequence homology detection through large scale pattern discovery. RECOMB 1999: 164-169 - [p2]Isidore Rigoutsos, Daniel E. Platt, Andrea Califano, B. David Silverman:
Representation and Matching of Small Flexible Molecules in Large Databases of 3D Molecular Information. Pattern Discovery in Biomolecular Data 1999: 111-129 - 1998
- [j5]Isidore Rigoutsos, Aris Floratos:
Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm [published erratum appears in Bioinformatics 1998;14(2): 229]. Bioinform. 14(1): 55-67 (1998) - [j4]Isidore Rigoutsos, Alex Delis:
Managing Statistical Behavior of Large Data Sets in Shared-Nothing Architectures. IEEE Trans. Parallel Distributed Syst. 9(11): 1073-1087 (1998) - [c9]Isidore Rigoutsos:
Well-Behaved, Tunable 3D-Affine Invariants. CVPR 1998: 455-460 - [c8]Isidore Rigoutsos:
Two-Dimensional Affine Invariants that Distribute Uniformly and can be Tuned to any Convex Feature Domain. ICCV 1998: 622-627 - [c7]Isidore Rigoutsos, Aris Floratos:
Motif discovery without alignment or enumeration (extended abstract). RECOMB 1998: 221-227 - 1997
- [c6]Xiong Wang, Jason Tsong-Li Wang, Dennis E. Shasha, Bruce A. Shapiro, Sitaram Dikshitulu, Isidore Rigoutsos, Kaizhong Zhang:
Automated Discovery of Active Motifs in Three Dimensional Molecules. KDD 1997: 89-95 - 1996
- [c5]Isidore Rigoutsos, Alex Delis:
The Impact of Hashing Function Choice on the Load Balancing in Very Large Dartasets. SEKE 1996: 301-308 - 1995
- [j3]Isidore Rigoutsos, Robert A. Hummel:
A Bayesian Approach to Model Matching with Geometric Hashing. Comput. Vis. Image Underst. 62(1): 11-26 (1995) - 1993
- [c4]Isidore Rigoutsos, Robert A. Hummel:
Distributed Bayesian object recognition. CVPR 1993: 180-186 - [c3]Andrea Califano, Isidore Rigoutsos:
FLASH: a fast look-up algorithm for string homology. CVPR 1993: 353-359 - [c2]Andrea Califano, Isidore Rigoutsos:
FLASH: A Fast Look-Up Algorithm for String Homology. ISMB 1993: 56-64 - 1992
- [b1]Isidore Rigoutsos:
Massively Parallel Bayesian Object Recognition. New York University, USA, 1992 - [j2]Isidore Rigoutsos, Robert A. Hummel:
Massively Parallel Model Matching: Geometric Hashing on the Connection Machine. Computer 25(2): 33-42 (1992) - [p1]Isidore Rigoutsos:
Visuo-Tactual Coarseness Estimation Tasks: Experiments and Modeling. Advances in Machine Vision 1992: 257-270 - 1991
- [j1]Marsha J. Berger, Isidore Rigoutsos:
An algorithm for point clustering and grid generation. IEEE Trans. Syst. Man Cybern. 21(5): 1278-1286 (1991)
1980 – 1989
- 1986
- [c1]Yiannis Aloimonos, Isidore Rigoutsos:
Determining the 3-D Motion of a Rigid Surface Patch Without Correspondence under Perspective Projection. AAAI 1986: 681-688
Coauthor Index
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