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2020 – today
- 2024
[j4]Steven A. Hofmeyr
, Aydin Buluç, Robert Riley, Rob Egan, Oguz Selvitopi, Leonid Oliker, Katherine A. Yelick, Migun Shakya, Brett Youtsey, Ariful Azad:
Exabiome: Advancing Microbial Science through Exascale Computing. Comput. Sci. Eng. 26(2): 8-15 (2024)- 2023
- [c7]Doru-Thom Popovici, Muaaz Gul Awan, Giulia Guidi, Rob Egan, Steven A. Hofmeyr, Leonid Oliker, Katherine A. Yelick:
Designing Efficient SIMD Kernels for High Performance Sequence Alignment. IPDPS Workshops 2023: 167-176 - 2022
- [j3]Jingchao Sun, Zhining Qiu, Rob Egan, Harrison Ho, Yue Li, Zhong Wang:
Persistent memory as an effective alternative to random access memory in metagenome assembly. BMC Bioinform. 23(1): 513 (2022) - 2021
- [c6]Muaaz Gul Awan, Steven A. Hofmeyr, Rob Egan, Nan Ding, Aydin Buluç, Jack Deslippe, Leonid Oliker, Katherine A. Yelick:
Accelerating large scale de novo metagenome assembly using GPUs. SC 2021: 7 - 2020
- [i3]Katherine A. Yelick, Aydin Buluç, Muaaz G. Awan, Ariful Azad, Benjamin Brock, Rob Egan, Saliya Ekanayake, Marquita Ellis, Evangelos Georganas, Giulia Guidi, Steven A. Hofmeyr, Oguz Selvitopi, Cristina Teodoropol, Leonid Oliker:
The Parallelism Motifs of Genomic Data Analysis. CoRR abs/2001.06989 (2020)
2010 – 2019
- 2019
- [j2]Nathan LaPierre, Rob Egan, Wei Wang, Zhong Wang:
De novo Nanopore read quality improvement using deep learning. BMC Bioinform. 20(1): 552:1-552:9 (2019) - 2018
- [c5]Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Eugene Goltsman, Bill Arndt, Andrew Tritt, Aydin Buluç, Leonid Oliker, Katherine A. Yelick:
Extreme scale de novo metagenome assembly. SC 2018: 10:1-10:13 - [i2]Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Eugene Goltsman, Bill Arndt, Andrew Tritt, Aydin Buluç, Leonid Oliker, Katherine A. Yelick:
Extreme Scale De Novo Metagenome Assembly. CoRR abs/1809.07014 (2018) - 2017
- [c4]Marquita Ellis, Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Aydin Buluç, Brandon Cook, Leonid Oliker, Katherine A. Yelick:
Performance Characterization of De Novo Genome Assembly on Leading Parallel Systems. Euro-Par 2017: 79-91 - [c3]Evangelos Georganas, Marquita Ellis, Rob Egan, Steven A. Hofmeyr, Aydin Buluç, Brandon Cook, Leonid Oliker, Katherine A. Yelick:
MerBench: PGAS Benchmarks for High Performance Genome Assembly. PAW@SC 2017: 5:1-5:4 - [i1]Evangelos Georganas, Steven A. Hofmeyr, Rob Egan, Aydin Buluç, Leonid Oliker, Daniel Rokhsar, Katherine A. Yelick:
Extreme-Scale De Novo Genome Assembly. CoRR abs/1705.11147 (2017) - 2015
- [c2]Evangelos Georganas, Aydin Buluç, Jarrod Chapman, Steven A. Hofmeyr, Chaitanya Aluru, Rob Egan, Leonid Oliker, Daniel Rokhsar, Katherine A. Yelick:
HipMer: an extreme-scale de novo genome assembler. SC 2015: 14:1-14:11 - 2013
- [j1]Scott C. Clark, Rob Egan, Peter I. Frazier, Zhong Wang:
ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies. Bioinform. 29(4): 435-443 (2013) - [c1]Taghrid Samak, Rob Egan, Brian Bushnell, Daniel K. Gunter, Alex Copeland, Zhong Wang:
Automatic Outlier Detection for Genome Assembly Quality Assessment. e-Science 2013: 45-52
Coauthor Index
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