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2020 – today
- 2022
[j9]Christian Baker
, Miguel Xochicale, Fang-Yu Lin, Sunish Mathews, Francois Joubert, Dzhoshkun I. Shakir, Richard Miles, Charles A. Mosse, Tianrui Zhao, Weidong Liang, Yada Kunpalin, Brian Dromey, Talisa Mistry, Neil J. Sebire, Edward Zhang, Sébastien Ourselin, Paul C. Beard, Anna L. David, Adrien E. Desjardins, Tom Vercauteren, Wenfeng Xia:
Intraoperative Needle Tip Tracking with an Integrated Fibre-Optic Ultrasound Sensor. Sensors 22(23): 9035 (2022)- 2021
- [j8]Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren:
Zero-Shot Super-Resolution With a Physically-Motivated Downsampling Kernel for Endomicroscopy. IEEE Trans. Medical Imaging 40(7): 1863-1874 (2021) - [i6]Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren:
Zero-shot super-resolution with a physically-motivated downsampling kernel for endomicroscopy. CoRR abs/2103.14015 (2021) - 2020
- [j7]Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Daniele Ravì, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren:
Learning from irregularly sampled data for endomicroscopy super-resolution: a comparative study of sparse and dense approaches. Int. J. Comput. Assist. Radiol. Surg. 15(7): 1167-1175 (2020) - [i5]Loïc Peter, Marcel Tella-Amo, Dzhoshkun Ismail Shakir, Jan Deprest, Sébastien Ourselin, Juan Eugenio Iglesias, Tom Vercauteren:
Active Annotation of Informative Overlapping Frames in Video Mosaicking Applications. CoRR abs/2012.15343 (2020)
2010 – 2019
- 2019
- [i4]Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Daniele Ravì, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren:
Learning from Irregularly Sampled Data for Endomicroscopy Super-resolution: A Comparative Study of Sparse and Dense Approaches. CoRR abs/1911.13169 (2019) - 2018
- [j6]Loïc Peter, Marcel Tella-Amo, Dzhoshkun Ismail Shakir, George Attilakos, Ruwan Wimalasundera, Jan Deprest, Sébastien Ourselin, Tom Vercauteren:
Retrieval and registration of long-range overlapping frames for scalable mosaicking of in vivo fetoscopy. Int. J. Comput. Assist. Radiol. Surg. 13(5): 713-720 (2018) - [j5]Daniele Ravì, Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Stephen P. Pereira, Tom Vercauteren:
Effective deep learning training for single-image super-resolution in endomicroscopy exploiting video-registration-based reconstruction. Int. J. Comput. Assist. Radiol. Surg. 13(6): 917-924 (2018) - [j4]Eli Gibson, Wenqi Li, Carole H. Sudre, Lucas Fidon, Dzhoshkun I. Shakir, Guotai Wang, Zach Eaton-Rosen, Robert J. Gray, Tom Doel, Yipeng Hu, Tom Whyntie, Parashkev Nachev, Marc Modat, Dean C. Barratt, Sébastien Ourselin, M. Jorge Cardoso, Tom Vercauteren:
NiftyNet: a deep-learning platform for medical imaging. Comput. Methods Programs Biomed. 158: 113-122 (2018) - [c9]Marcel Tella-Amo, Loïc Peter, Dzhoshkun I. Shakir, Jan Deprest, Danail Stoyanov, Juan Eugenio Iglesias, Tom Vercauteren, Sébastien Ourselin:
Technical note: probabilistic visual and electromagnetic data fusion for robust drift-free sequential mosaicking. Application to fetoscopy. Image-Guided Procedures 2018: 105760I - [i3]Loïc Peter, Marcel Tella-Amo, Dzhoshkun Ismail Shakir, George Attilakos, Ruwan Wimalasundera, Jan Deprest, Sébastien Ourselin, Tom Vercauteren:
Retrieval and Registration of Long-Range Overlapping Frames for Scalable Mosaicking of In Vivo Fetoscopy. CoRR abs/1802.10554 (2018) - [i2]Daniele Ravì, Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Stephen P. Pereira, Tom Vercauteren:
Effective deep learning training for single-image super-resolution in endomicroscopy exploiting video-registration-based reconstruction. CoRR abs/1803.08840 (2018) - 2017
- [j3]Frederic Monge, Dzhoshkun I. Shakir, Florence Lejeune, Xavier Morandi, Nassir Navab, Pierre Jannin:
Acquisition models in intraoperative positron surface imaging. Int. J. Comput. Assist. Radiol. Surg. 12(4): 691-703 (2017) - [j2]Tom Doel, Dzhoshkun I. Shakir, Rosalind Pratt, Michael Aertsen, James Moggridge, Erwin Bellon, Anna L. David, Jan Deprest, Tom Vercauteren, Sébastien Ourselin:
GIFT-Cloud: A data sharing and collaboration platform for medical imaging research. Comput. Methods Programs Biomed. 139: 181-190 (2017) - [j1]Sebastiano Ferraris, Dzhoshkun Ismail Shakir, Johannes L. van der Merwe, Willy Gsell, Jan Deprest, Tom Vercauteren:
Bruker2nifti: Magnetic Resonance Images converter from Bruker ParaVision to Nifti format. J. Open Source Softw. 2(16): 354 (2017) - [i1]Eli Gibson, Wenqi Li, Carole H. Sudre, Lucas Fidon, Dzhoshkun I. Shakir, Guotai Wang, Zach Eaton-Rosen, Robert J. Gray, Tom Doel, Yipeng Hu, Tom Whyntie, Parashkev Nachev, Dean C. Barratt, Sébastien Ourselin, M. Jorge Cardoso, Tom Vercauteren:
NiftyNet: a deep-learning platform for medical imaging. CoRR abs/1709.03485 (2017) - 2016
- [c8]Marcel Tella-Amo, Pankaj Daga, François Chadebecq, Stephen A. Thompson, Dzhoshkun I. Shakir, George Dwyer, Ruwan Wimalasundera, Jan Deprest, Danail Stoyanov, Tom Vercauteren, Sébastien Ourselin:
A Combined EM and Visual Tracking Probabilistic Model for Robust Mosaicking: Application to Fetoscopy. CVPR Workshops 2016: 524-532 - [c7]Pankaj Daga, François Chadebecq, Dzhoshkun I. Shakir, Luis Carlos García-Peraza-Herrera, Marcel Tella, George Dwyer, Anna L. David, Jan Deprest, Danail Stoyanov, Tom Vercauteren, Sébastien Ourselin:
Real-time mosaicing of fetoscopic videos using SIFT. Image-Guided Procedures 2016: 97861R - [c6]Frédéric Monge, Dzhoshkun I. Shakir, Nassir Navab, Pierre Jannin:
Partition-based acquisition model for speed up navigated beta-probe surface imaging. Image-Guided Procedures 2016: 97862P - 2014
- [b1]Dzhoshkun Ismail Shakir:
Intra-operative Nuclear Imaging Based on Positron-emitting Radiotracers (Intra-operative Nuklearmedizinische Bildgebung anhand Positronen-emittierender radioaktiver Tracer). Technical University of Munich, Germany, 2014 - 2013
- [c5]Asli Okur, Dzhoshkun I. Shakir, Philipp Matthies, Alexander Hartl, Sibylle Ilse Ziegler, Markus Essler, Tobias Lasser, Nassir Navab:
Freehand Tomographic Nuclear Imaging Using Tracked High-Energy Gamma Probes. Bildverarbeitung für die Medizin 2013: 362-367 - 2012
- [c4]Dzhoshkun I. Shakir, Asli Okur, Alexander Hartl, Philipp Matthies, Sibylle Ilse Ziegler, Markus Essler, Tobias Lasser, Nassir Navab:
Towards Intra-operative PET for Head and Neck Cancer: Lymph Node Localization Using High-Energy Probes. MICCAI (1) 2012: 430-437 - [c3]Alexander Hartl, Dzhoshkun I. Shakir, Risto Kojchev, Nassir Navab, Sibylle Ilse Ziegler, Tobias Lasser:
Freehand SPECT reconstructions using look up tables. Image-Guided Procedures 2012: 83162H - [c2]Dzhoshkun I. Shakir, Alexander Hartl, Florian R. Schneider, Jozef Pulko, Sibylle Ilse Ziegler, Nassir Navab, Tobias Lasser:
Two new ad-hoc models of detection physics and their evaluation for navigated beta probe surface imaging. Image-Guided Procedures 2012: 83162G - 2011
- [c1]Dzhoshkun I. Shakir, Alexander Hartl, Nassir Navab, Sibylle Ilse Ziegler:
Evaluation of an ad hoc model of detection physics for navigated beta-probe surface imaging. Image-Guided Procedures 2011: 796405
Coauthor Index
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