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2020 – today
- 2023
[j23]Pedro de Atauri
, Carles Foguet, Marta Cascante:
Control analysis in the identification of key enzymes driving metabolic adaptations: Towards drug target discovery. Biosyst. 231: 104984 (2023)- 2021
- [j22]Pedro de Atauri, Míriam Tarrado-Castellarnau, Josep Tarragó-Celada, Carles Foguet, Effrosyni Karakitsou, Josep J. Centelles, Marta Cascante:
Integrating systemic and molecular levels to infer key drivers sustaining metabolic adaptations. PLoS Comput. Biol. 17(7) (2021)
2010 – 2019
- 2019
- [j21]Payam Emami Khoonsari, Pablo A. Moreno, Sven Bergmann, Joachim Burman, Marco Capuccini, Matteo Carone, Marta Cascante, Pedro de Atauri, Carles Foguet, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Sijin He, Stephanie Herman, David Johnson, Namrata Kale, Anders Larsson, Steffen Neumann, Kristian Peters, Luca Pireddu, Philippe Rocca-Serra, Pierrick Roger, Rico Rueedi, Christoph Ruttkies, Noureddin Sadawi, Reza M. Salek, Susanna-Assunta Sansone, Daniel Schober, Vitaly A. Selivanov, Etienne A. Thévenot, Michael van Vliet, Gianluigi Zanetti, Christoph Steinbeck, Kim Kultima, Ola Spjuth:
Interoperable and scalable data analysis with microservices: applications in metabolomics. Bioinform. 35(19): 3752-3760 (2019) - [j20]Carles Foguet, Anusha Jayaraman, Silvia Marin, Vitaly A. Selivanov, Pablo A. Moreno, Ramon Messeguer, Pedro de Atauri, Marta Cascante:
p13CMFA: Parsimonious 13C metabolic flux analysis. PLoS Comput. Biol. 15(9) (2019) - 2018
- [j19]Igor Marín de Mas, Esther Aguilar, Erika Zodda, Cristina Balcells, Silvia Marin, Guido Dallmann, Timothy M. Thomson, Balázs Papp, Marta Cascante:
Model-driven discovery of long-chain fatty acid metabolic reprogramming in heterogeneous prostate cancer cells. PLoS Comput. Biol. 14(1) (2018) - 2017
- [j18]Igor Marín de Mas, Eric Fanchon, Balázs Papp, Susana G. Kalko, Josep Roca, Marta Cascante:
Molecular mechanisms underlying COPD-muscle dysfunction unveiled through a systems medicine approach. Bioinform. 33(1): 95-103 (2017) - [j17]Vitaly A. Selivanov, Adrián Benito, Anibal Miranda, Esther Aguilar, Ibrahim Halil Polat, Josep J. Centelles, Anusha Jayaraman, Paul W.-N. Lee, Silvia Marin, Marta Cascante:
MIDcor, an R-program for deciphering mass interferences in mass spectra of metabolites enriched in stable isotopes. BMC Bioinform. 18(1): 88:1-88:9 (2017) - [i1]Merlijn N. van Rijswijk, Charlie Beirnaert, Christophe Caron, Marta Cascante, Victoria Dominguez Del Angel, Warwick B. Dunn, Timothy M. D. Ebbels, Franck Giacomoni, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Jose L. Izquierdo-García, Rafael C. Jiménez, Fabien Jourdan, Namrata Kale, Maria I. Klapa, Oliver Kohlbacher, Kairi Koort, Kim Kultima, Gildas Le Corguillé, Nicholas K. Moschonas, Steffen Neumann, Claire O'Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato, Reza M. Salek, Susanna-Assunta Sansone, Venkata P. Satagopam, Daniel Schober, Ruth Shimmo, Rachel A. Spicer, Ola Spjuth, Etienne A. Thévenot, Mark R. Viant, Ralf J. M. Weber, Egon L. Willighagen, Gianluigi Zanetti, Christoph Steinbeck:
The future of metabolomics in ELIXIR. F1000Research 6: 1649- (2017) - 2016
- [j16]Ákos Tényi, Pedro de Atauri, David Gomez-Cabrero, Isaac Cano, Kim Clarke, Francesco Falciani, Marta Cascante, Josep Roca, Dieter Maier:
ChainRank, a chain prioritisation method for contextualisation of biological networks. BMC Bioinform. 17: 17 (2016) - [j15]Carles Foguet, Silvia Marin, Vitaly A. Selivanov, Eric Fanchon, Wai-Nang Paul Lee, Joan J. Guinovart, Pedro de Atauri, Marta Cascante:
HepatoDyn: A Dynamic Model of Hepatocyte Metabolism That Integrates 13C Isotopomer Data. PLoS Comput. Biol. 12(4) (2016) - 2015
- [j14]Michael Binns, Pedro de Atauri, Anestis Vlysidis, Marta Cascante, Constantinos Theodoropoulos:
Sampling with poling-based flux balance analysis: optimal versus sub-optimal flux space analysis of Actinobacillus succinogenes. BMC Bioinform. 16: 49:1-49:19 (2015) - 2014
- [j13]Shirley Guzmán, Silvia Marin, Anibal Miranda, Vitaly A. Selivanov, Josep J. Centelles, Romain Harmancey, Fatima Smih, Annie Turkieh, Yves Durocher, Antonio Zorzano, Philippe Rouet, Marta Cascante:
13C metabolic flux analysis shows that resistin impairs the metabolic response to insulin in L6E9 myotubes. BMC Syst. Biol. 8: 109 (2014) - 2012
- [j12]Vitaly A. Selivanov, Marta Cascante, Mark Friedman, Mark F. Schumaker, Massimo Trucco, Tatyana V. Votyakova:
Multistationary and Oscillatory Modes of Free Radicals Generation by the Mitochondrial Respiratory Chain Revealed by a Bifurcation Analysis. PLoS Comput. Biol. 8(9) (2012) - 2011
- [j11]Jon Pey, Constantinos Theodoropoulos, Alberto Rezola, Angel Rubio, Marta Cascante, Francisco J. Planes:
Do elementary flux modes combine linearly at the "atomic" level? Integrating tracer-based metabolomics data and elementary flux modes. Biosyst. 105(2): 140-146 (2011) - [j10]Dieter Maier, Wenzel Kalus, Martin Wolff, Susana G. Kalko, Josep Roca, Igor Marín de Mas, Nil Turan, Marta Cascante, Francesco Falciani, Miguel Hernandez, Jordi Villà-Freixa, Sascha Losko:
Knowledge management for systems biology a general and visually driven framework applied to translational medicine. BMC Syst. Biol. 5: 38 (2011) - [j9]Igor Marín de Mas, Vitaly A. Selivanov, Silvia Marin, Josep Roca, Matej Oresic, Loranne Agius, Marta Cascante:
Compartmentation of glycogen metabolism revealed from 13C isotopologue distributions. BMC Syst. Biol. 5: 175 (2011) - [j8]Vitaly A. Selivanov, Tatyana V. Votyakova, Violetta N. Pivtoraiko, Jennifer Zeak, Tatiana Sukhomlin, Massimo Trucco, Josep Roca, Marta Cascante:
Reactive Oxygen Species Production by Forward and Reverse Electron Fluxes in the Mitochondrial Respiratory Chain. PLoS Comput. Biol. 7(3) (2011) - [j7]Nil Turan, Susana G. Kalko, Anna Stincone, Kim Clarke, Ayesha Sabah, Katherine Howlett, S. John Curnow, Diego A. Rodriguez, Marta Cascante, Laura O'Neill, Stuart Egginton, Josep Roca, Francesco Falciani:
A Systems Biology Approach Identifies Molecular Networks Defining Skeletal Muscle Abnormalities in Chronic Obstructive Pulmonary Disease. PLoS Comput. Biol. 7(9) (2011) - 2010
- [j6]Vitaly A. Selivanov, Pedro Vizán, Faustino Mollinedo, Teresa W.-M. Fan, Paul W.-N. Lee, Marta Cascante:
Edelfosine-induced metabolic changes in cancer cells that precede the overproduction of reactive oxygen species and apoptosis. BMC Syst. Biol. 4: 135 (2010)
2000 – 2009
- 2009
- [j5]Vitaly A. Selivanov, Tatyana V. Votyakova, Jennifer Zeak, Massimo Trucco, Josep Roca, Marta Cascante:
Bistability of Mitochondrial Respiration Underlies Paradoxical Reactive Oxygen Species Generation Induced by Anoxia. PLoS Comput. Biol. 5(12) (2009) - 2007
- [j4]Julio Vera, Raul Curto, Marta Cascante, Néstor V. Torres:
Detection of potential enzyme targets by metabolic modelling and optimization: Application to a simple enzymopathy. Bioinform. 23(17): 2281-2289 (2007) - 2006
- [j3]Vitaly A. Selivanov, Silvia Marin, Paul W.-N. Lee, Marta Cascante:
Software for dynamic analysis of tracer-based metabolomic data: estimation of metabolic fluxes and their statistical analysis. Bioinform. 22(22): 2806-2812 (2006) - 2005
- [j2]Vitaly A. Selivanov, Ludmilla E. Meshalkina, Olga N. Solovjeva, Philip W. Kuchel, Antonio Ramos-Montoya, German A. Kochetov, Paul W.-N. Lee, Marta Cascante:
Rapid simulation and analysis of isotopomer distributions using constraints based on enzyme mechanisms: an example from HT29 cancer cells. Bioinform. 21(17): 3558-3564 (2005) - 2004
- [j1]Vitaly A. Selivanov, Joaquim Puigjaner, Antonio Sillero, Josep J. Centelles, Antonio Ramos-Montoya, Paul W.-N. Lee, Marta Cascante:
An optimized algorithm for flux estimation from isotopomer distribution in glucose metabolites. Bioinform. 20(18): 3387-3397 (2004)
Coauthor Index
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