BibTeX records: Ali Rana Atilgan

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@article{DBLP:journals/jcisd/CetinGKGTADA23,
  author       = {Ebru {\c{C}}etin and
                  Tandac F. Guclu and
                  Isik Kantarcioglu and
                  Ilona K. Gaszek and
                  Erdal Toprak and
                  Ali Rana Atilgan and
                  Burcu Dedeoglu and
                  Canan Atilgan},
  title        = {Kinetic Barrier to Enzyme Inhibition Is Manipulated by Dynamical Local
                  Interactions in \emph{E. coli} {DHFR}},
  journal      = {J. Chem. Inf. Model.},
  volume       = {63},
  number       = {15},
  pages        = {4839--4849},
  year         = {2023},
  url          = {https://doi.org/10.1021/acs.jcim.3c00818},
  doi          = {10.1021/ACS.JCIM.3C00818},
  timestamp    = {Sun, 06 Oct 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/CetinGKGTADA23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcisd/CetinAA22,
  author       = {Ebru {\c{C}}etin and
                  Ali Rana Atilgan and
                  Canan Atilgan},
  title        = {{DHFR} Mutants Modulate Their Synchronized Dynamics with the Substrate
                  by Shifting Hydrogen Bond Occupancies},
  journal      = {J. Chem. Inf. Model.},
  volume       = {62},
  number       = {24},
  pages        = {6715--6726},
  year         = {2022},
  url          = {https://doi.org/10.1021/acs.jcim.2c00507},
  doi          = {10.1021/ACS.JCIM.2C00507},
  timestamp    = {Sat, 13 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/CetinAA22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/compnet/OkanTAAO21,
  author       = {Osman Burak Okan and
                  Deniz Turgut and
                  Canan Atilgan and
                  Ali Rana Atilgan and
                  Rahmi Ozisik},
  title        = {Could network structures generated with simple rules imposed on a
                  cubic lattice reproduce the structural descriptors of globular proteins?},
  journal      = {J. Complex Networks},
  volume       = {10},
  number       = {1},
  year         = {2021},
  url          = {https://doi.org/10.1093/comnet/cnab048},
  doi          = {10.1093/COMNET/CNAB048},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/compnet/OkanTAAO21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcisd/GucluKAA21,
  author       = {Tandac F. Guclu and
                  Nazli Kocatug and
                  Ali Rana Atilgan and
                  Canan Atilgan},
  title        = {N-Terminus of the Third {PDZ} Domain of {PSD-95} Orchestrates Allosteric
                  Communication for Selective Ligand Binding},
  journal      = {J. Chem. Inf. Model.},
  volume       = {61},
  number       = {1},
  pages        = {347--357},
  year         = {2021},
  url          = {https://doi.org/10.1021/acs.jcim.0c01079},
  doi          = {10.1021/ACS.JCIM.0C01079},
  timestamp    = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/GucluKAA21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/RossNGAAAB18,
  author       = {Caroline J. Ross and
                  Bilal Nizami and
                  Michael Glenister and
                  Olivier Sheik Amamuddy and
                  Ali Rana Atilgan and
                  Canan Atilgan and
                  {\"{O}}zlem Tastan Bishop},
  title        = {{MODE-TASK:} large-scale protein motion tools},
  journal      = {Bioinform.},
  volume       = {34},
  number       = {21},
  pages        = {3759--3763},
  year         = {2018},
  url          = {https://doi.org/10.1093/bioinformatics/bty427},
  doi          = {10.1093/BIOINFORMATICS/BTY427},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RossNGAAAB18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/BrownPARAAB17,
  author       = {David K. Brown and
                  David L. Penkler and
                  Olivier Sheik Amamuddy and
                  Caroline J. Ross and
                  Ali Rana Atilgan and
                  Canan Atilgan and
                  {\"{O}}zlem Tastan Bishop},
  title        = {{MD-TASK:} a software suite for analyzing molecular dynamics trajectories},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {17},
  pages        = {2768--2771},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btx349},
  doi          = {10.1093/BIOINFORMATICS/BTX349},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BrownPARAAB17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/AykutAA13,
  author       = {Ayse Ozlem Aykut and
                  Ali Rana Atilgan and
                  Canan Atilgan},
  title        = {Designing Molecular Dynamics Simulations to Shift Populations of the
                  Conformational States of Calmodulin},
  journal      = {PLoS Comput. Biol.},
  volume       = {9},
  number       = {12},
  year         = {2013},
  url          = {https://doi.org/10.1371/journal.pcbi.1003366},
  doi          = {10.1371/JOURNAL.PCBI.1003366},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ploscb/AykutAA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/corr/abs-1010-3096,
  author       = {Deniz Turgut and
                  Ali Rana Atilgan and
                  Canan Atilgan},
  title        = {Assortative Mixing in Close-Packed Spatial Networks},
  journal      = {CoRR},
  volume       = {abs/1010.3096},
  year         = {2010},
  url          = {http://arxiv.org/abs/1010.3096},
  eprinttype    = {arXiv},
  eprint       = {1010.3096},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1010-3096.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/corr/abs-1012-5961,
  author       = {Serdar {\c{C}}olak and
                  Hilmi Lus and
                  Ali Rana Atilgan},
  title        = {Vulnerability of Networks Against Critical Link Failures},
  journal      = {CoRR},
  volume       = {abs/1012.5961},
  year         = {2010},
  url          = {http://arxiv.org/abs/1012.5961},
  eprinttype    = {arXiv},
  eprint       = {1012.5961},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1012-5961.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/AtilganA09,
  author       = {Canan Atilgan and
                  Ali Rana Atilgan},
  title        = {Perturbation-Response Scanning Reveals Ligand Entry-Exit Mechanisms
                  of Ferric Binding Protein},
  journal      = {PLoS Comput. Biol.},
  volume       = {5},
  number       = {10},
  year         = {2009},
  url          = {https://doi.org/10.1371/journal.pcbi.1000544},
  doi          = {10.1371/JOURNAL.PCBI.1000544},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ploscb/AtilganA09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/advcs/AtilganAD08,
  author       = {Canan Atilgan and
                  Ali Rana Atilgan and
                  G{\"{u}}ven Demirel},
  title        = {Collective Behavior of el Farol Attendees},
  journal      = {Adv. Complex Syst.},
  volume       = {11},
  number       = {4},
  pages        = {629--639},
  year         = {2008},
  url          = {https://doi.org/10.1142/S0219525908001829},
  doi          = {10.1142/S0219525908001829},
  timestamp    = {Sun, 25 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/advcs/AtilganAD08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}