@article{DBLP:journals/corr/abs-2401-16131,
author = {Hadar Hezi and
Matan Gelber and
Alexander Balabanov and
Yosef E. Maruvka and
Moti Freiman},
title = {{CIMIL-CRC:} a clinically-informed multiple instance learning framework
for patient-level colorectal cancer molecular subtypes classification
from H{\textbackslash}{\&}E stained images},
journal = {CoRR},
volume = {abs/2401.16131},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2401.16131},
doi = {10.48550/ARXIV.2401.16131},
eprinttype = {arXiv},
eprint = {2401.16131},
timestamp = {Tue, 06 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2401-16131.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2409-11119,
author = {Sharon Peled and
Yosef E. Maruvka and
Moti Freiman},
title = {Multi-Cohort Framework with Cohort-Aware Attention and Adversarial
Mutual-Information Minimization for Whole Slide Image Classification},
journal = {CoRR},
volume = {abs/2409.11119},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2409.11119},
doi = {10.48550/ARXIV.2409.11119},
eprinttype = {arXiv},
eprint = {2409.11119},
timestamp = {Mon, 21 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2409-11119.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clip-ws/ShaniFM23,
author = {Guy Shani and
Moti Freiman and
Yosef E. Maruvka},
editor = {Stefan Wesarg and
Esther Puyol{-}Ant{\'{o}}n and
John S. H. Baxter and
Marius Erdt and
Klaus Drechsler and
Cristina Oyarzun Laura and
Moti Freiman and
Yufei Chen and
Islem Rekik and
Roy Eagleson and
Aasa Feragen and
Andrew P. King and
Veronika Cheplygina and
Melanie Ganz{-}Benjaminsen and
Enzo Ferrante and
Ben Glocker and
Daniel Moyer and
Eike Petersen},
title = {An Efficient and Accurate Neural Network Tool for Finding Correlation
Between Gene Expression and Histological Images},
booktitle = {Clinical Image-Based Procedures, Fairness of {AI} in Medical Imaging,
and Ethical and Philosophical Issues in Medical Imaging - 12th International
Workshop, {CLIP} 2023 1st International Workshop, {FAIMI} 2023 and
2nd International Workshop, {EPIMI} 2023 Vancouver, BC, Canada, October
8 and October 12, 2023 Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14242},
pages = {81--88},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-45249-9\_8},
doi = {10.1007/978-3-031-45249-9\_8},
timestamp = {Tue, 20 Aug 2024 07:54:44 +0200},
biburl = {https://dblp.org/rec/conf/clip-ws/ShaniFM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2303-14703,
author = {Hadar Hezi and
Daniel Shats and
Daniel Gurevich and
Yosef E. Maruvka and
Moti Freiman},
title = {Biologically-primed deep neural network improves colorectal Cancer
Molecular subtypes prediction from H{\&}E stained images},
journal = {CoRR},
volume = {abs/2303.14703},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2303.14703},
doi = {10.48550/ARXIV.2303.14703},
eprinttype = {arXiv},
eprint = {2303.14703},
timestamp = {Fri, 14 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2303-14703.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccv/ShatsHSMF22,
author = {Daniel Shats and
Hadar Hezi and
Guy Shani and
Yosef E. Maruvka and
Moti Freiman},
editor = {Leonid Karlinsky and
Tomer Michaeli and
Ko Nishino},
title = {Patient-Level Microsatellite Stability Assessment from Whole Slide
Images by Combining Momentum Contrast Learning and Group Patch Embeddings},
booktitle = {Computer Vision - {ECCV} 2022 Workshops - Tel Aviv, Israel, October
23-27, 2022, Proceedings, Part {III}},
series = {Lecture Notes in Computer Science},
volume = {13803},
pages = {454--465},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-25066-8\_25},
doi = {10.1007/978-3-031-25066-8\_25},
timestamp = {Sat, 25 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eccv/ShatsHSMF22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2208-10429,
author = {Daniel Shats and
Hadar Hezi and
Guy Shani and
Yosef E. Maruvka and
Moti Freiman},
title = {Patient-level Microsatellite Stability Assessment from Whole Slide
Images By Combining Momentum Contrast Learning and Group Patch Embeddings},
journal = {CoRR},
volume = {abs/2208.10429},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2208.10429},
doi = {10.48550/ARXIV.2208.10429},
eprinttype = {arXiv},
eprint = {2208.10429},
timestamp = {Mon, 29 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2208-10429.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/RheinbayNAWSTHH20,
author = {Esther Rheinbay and
Morten Muhlig Nielsen and
Federico Abascal and
Jeremiah Wala and
Ofer Shapira and
Grace Tiao and
Henrik Hornsh{\o}j and
Julian M. Hess and
Randi Istrup Juul and
Ziao Lin and
Lars Feuerbach and
Radhakrishnan Sabarinathan and
Tobias Madsen and
Jaegil Kim and
Loris Mularoni and
Shimin Shuai and
Andr{\'{e}}s Lanz{\'{o}}s and
Carl Herrmann and
Yosef E. Maruvka and
Ciyue Shen and
Samirkumar B. Amin and
Pratiti Bandopadhayay and
Johanna Bertl and
Keith A. Boroevich and
John Busanovich and
Joana Carlevaro{-}Fita and
Dimple Chakravarty and
Calvin Wing Yiu Chan and
David Craft and
Priyanka Dhingra and
Klev Diamanti and
Nuno A. Fonseca and
Abel Gonzalez{-}Perez and
Qianyun Guo and
Mark P. Hamilton and
Nicholas J. Haradhvala and
Chen Hong and
Keren Isaev and
Todd A. Johnson and
Malene Juul and
Andr{\'{e}} Kahles and
Abdullah Kahraman and
Youngwook Kim and
Jan Komorowski and
Kiran Kumar and
Sushant Kumar and
Donghoon Lee and
Kjong{-}Van Lehmann and
Yilong Li and
Eric Minwei Liu and
Lucas Lochovsky and
Keunchil Park and
Oriol Pich and
Nicola D. Roberts and
Gordon Saksena and
Steven E. Schumacher and
Nikos Sidiropoulos and
Lina Sieverling and
Nasa Sinnott{-}Armstrong and
Chip Stewart and
David Tamborero and
Jose M. C. Tubio and
Husen M. Umer and
Liis Uusk{\"{u}}la{-}Reimand and
Claes Wadelius and
Lina Wadi and
Xiaotong Yao and
Cheng{-}Zhong Zhang and
Jing Zhang and
James E. Haber and
Asger Hobolth and
Marcin Imielinski and
Manolis Kellis and
Michael S. Lawrence and
Christian von Mering and
Hidewaki Nakagawa and
Benjamin J. Raphael and
Mark A. Rubin and
Chris Sander and
Lincoln D. Stein and
Joshua M. Stuart and
Tatsuhiko Tsunoda and
David A. Wheeler and
Rory Johnson and
J{\"{u}}ri Reimand and
Mark Gerstein and
Ekta Khurana and
Peter J. Campbell and
N{\'{u}}ria L{\'{o}}pez{-}Bigas and
Gary D. Bader and
Jonathan Barenboim and
Rameen Beroukhim and
S{\o}ren Brunak and
Ken Chen and
Jung Kyoon Choi and
Jordi Deu{-}Pons and
J. Lynn Fink and
Joan Frigola and
Carlo Gambacorti Passerini and
Dale W. Garsed and
Gad Getz and
Ivo Glynne Gut and
David Haan and
Arif Ozgun Harmanci and
Mohamed Helmy and
Ermin Hodzic and
Jos{\'{e}} M. G. Izarzugaza and
Jong K. Kim and
Jan O. Korbel and
Erik Larsson and
Shantao Li and
Xiaotong Li and
Shaoke Lou and
Kathleen Marchal and
I{\~{n}}igo Martincorena and
Alexander Mart{\'{\i}}nez{-}Fundichely and
Patrick D. McGillivray and
William Meyerson and
Ferran Mui{\~{n}}os and
Marta Paczkowska and
Kiejung Park and
Jakob Skou Pedersen and
Tirso Pons and
Sergio Pulido{-}Tamayo and
Iker Reyes{-}Salazar and
Matthew A. Reyna and
Carlota Rubio{-}Perez and
S{\"{u}}leyman Cenk Sahinalp and
Leonidas Salichos and
Mark Shackleton and
Raunak Shrestha and
Alfonso Valencia and
Miguel Vazquez and
Lieven P. C. Verbeke and
Jiayin Wang and
Jonathan Warrell and
Sebastian M. Waszak and
Joachim Weischenfeldt and
Guanming Wu and
Jun Yu and
Xuanping Zhang and
Yan Zhang and
Zhongming Zhao and
Lihua Zou and
Kadir C. Akdemir and
Eva G. Alvarez and
Adrian Baez{-}Ortega and
Paul C. Boutros and
David D. L. Bowtell and
Benedikt Brors and
Kathleen H. Burns and
Kin Chan and
Isidro Cort{\'{e}}s{-}Ciriano and
Ana Dueso{-}Barroso and
Andrew J. Dunford and
Paul A. Edwards and
Xavier Estivill and
Dariush Etemadmoghadam and
Milana Frenkel{-}Morgenstern and
Dmitry A. Gordenin and
Barbara Hutter and
David T. W. Jones and
Young Seok Ju and
Marat D. Kazanov and
Leszek J. Klimczak and
Youngil Koh and
Eunjung Alice Lee and
Jake June{-}Koo Lee and
Andy G. Lynch and
Geoff MacIntyre and
Florian Markowetz and
Matthew Meyerson and
Satoru Miyano and
Fabio C. P. Navarro and
Stephan Ossowski and
Peter J. Park and
John V. Pearson and
Montserrat Puiggr{\`{o}}s and
Karsten Rippe and
Steven A. Roberts and
Bernardo Rodriguez{-}Martin and
Ralph Scully and
David Torrents and
Izar Villasante and
Nicola Waddell and
Jeremiah A. Wala and
Lixing Yang and
Sung{-}Soo Yoon and
Jorge Zamora},
title = {Analyses of non-coding somatic drivers in 2,658 cancer whole genomes},
journal = {Nat.},
volume = {578},
number = {7793},
pages = {102--111},
year = {2020},
url = {https://doi.org/10.1038/s41586-020-1965-x},
doi = {10.1038/S41586-020-1965-X},
timestamp = {Thu, 11 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nature/RheinbayNAWSTHH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/Chapal-IlaniMSRASS13,
author = {Noa Chapal{-}Ilani and
Yosef E. Maruvka and
Adam Spiro and
Yitzhak Reizel and
Rivka Adar and
Liran I. Shlush and
Ehud Shapiro},
title = {Comparing Algorithms That Reconstruct Cell Lineage Trees Utilizing
Information on Microsatellite Mutations},
journal = {PLoS Comput. Biol.},
volume = {9},
number = {11},
year = {2013},
url = {https://doi.org/10.1371/journal.pcbi.1003297},
doi = {10.1371/JOURNAL.PCBI.1003297},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/Chapal-IlaniMSRASS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/MaruvkaS09,
author = {Yosef E. Maruvka and
Nadav M. Shnerb},
title = {Polymorphism Data Can Reveal the Origin of Species Abundance Statistics},
journal = {PLoS Comput. Biol.},
volume = {5},
number = {4},
year = {2009},
url = {https://doi.org/10.1371/journal.pcbi.1000359},
doi = {10.1371/JOURNAL.PCBI.1000359},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/MaruvkaS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
