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2010 – 2019
- 2016
[j17]Francisco García-García
, Joaquin Panadero, Joaquín Dopazo, David Montaner:
Integrated gene set analysis for microRNA studies. Bioinform. 32(18): 2809-2816 (2016)- 2015
- [j16]Roberto Alonso, Francisco Salavert, Francisco García-García, José Carbonell-Caballero, Marta Bleda, Luz Garcia-Alonso, Alba Sanchis-Juan, Daniel Perez-Gil, Pablo Marín-García, Rubén Sánchez, Cankut Çubuk, Marta R. Hidalgo, Alicia Amadoz, Rosa D. Hernansaiz-Ballesteros, Alejandro Alemán, Joaquín Tárraga, David Montaner, Ignacio Medina, Joaquín Dopazo:
Babelomics 5.0: functional interpretation for new generations of genomic data. Nucleic Acids Res. 43(Webserver-Issue): W117-W121 (2015) - 2014
- [j15]Patricia Sebastián-León, Enrique Vidal, Pablo Minguez, Ana Conesa, Sonia Tarazona, Alicia Amadoz, Carmen Armero, Francisco Salavert, Antonio Vidal-Puig, David Montaner, Joaquín Dopazo:
Understanding disease mechanisms with models of signaling pathway activities. BMC Syst. Biol. 8: 121 (2014) - [j14]Ignacio Ponzoni, María José Nueda, Sonia Tarazona, Stefan Götz, David Montaner, Julieta Sol Dussaut, Joaquín Dopazo, Ana Conesa:
Pathway network inference from gene expression data. BMC Syst. Biol. 8(S-2): S7 (2014) - 2010
- [j13]Ignacio Medina, José Carbonell, Luis Pulido, Sara C. Madeira, Stefan Götz, Ana Conesa, Joaquín Tárraga, Alberto D. Pascual-Montano, Rubén Nogales-Cadenas, Javier Santoyo, Francisco García-García, Martina Marbà, David Montaner, Joaquín Dopazo:
Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. Nucleic Acids Res. 38(Web-Server-Issue): 210-213 (2010)
2000 – 2009
- 2009
- [j12]Pablo Minguez, Stefan Götz, David Montaner, Fátima Al-Shahrour, Joaquín Dopazo:
SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks. Nucleic Acids Res. 37(Web-Server-Issue): 109-114 (2009) - [j11]Ignacio Medina, David Montaner, Nuria Bonifaci, Miguel Angel Pujana, José Carbonell, Joaquín Tárraga, Fátima Al-Shahrour, Joaquín Dopazo:
Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies. Nucleic Acids Res. 37(Web-Server-Issue): 340-344 (2009) - 2008
- [j10]Joan Valls, Mònica Grau, Xavier Solé, Pilar Hernández, David Montaner, Joaquín Dopazo, Miguel A. Peinado, Gabriel Capellá, Víctor Moreno, Miguel Angel Pujana:
CLEAR-test: Combining inference for differential expression and variability in microarray data analysis. J. Biomed. Informatics 41(1): 33-45 (2008) - [j9]Joaquín Tárraga, Ignacio Medina, José Carbonell, Jaime Huerta-Cepas, Pablo Minguez, Eva Alloza, Fátima Al-Shahrour, Susana Vegas-Azcárate, Stefan Götz, Pablo Escobar, Francisco García-García, Ana Conesa, David Montaner, Joaquín Dopazo:
GEPAS, a web-based tool for microarray data analysis and interpretation. Nucleic Acids Res. 36(Web-Server-Issue): 308-314 (2008) - [j8]Fátima Al-Shahrour, José Carbonell, Pablo Minguez, Stefan Götz, Ana Conesa, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo:
Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments. Nucleic Acids Res. 36(Web-Server-Issue): 341-346 (2008) - 2007
- [j7]Ignacio Medina, David Montaner, Joaquín Tárraga, Joaquín Dopazo:
Prophet, a web-based tool for class prediction using microarray data. Bioinform. 23(3): 390-391 (2007) - [j6]Pablo Minguez, Fátima Al-Shahrour, David Montaner, Joaquín Dopazo:
Functional profiling of microarray experiments using text-mining derived bioentities. Bioinform. 23(22): 3098-3099 (2007) - [j5]Fátima Al-Shahrour, Leonardo Arbiza, Hernán Dopazo, Jaime Huerta-Cepas, Pablo Minguez, David Montaner, Joaquín Dopazo:
From genes to functional classes in the study of biological systems. BMC Bioinform. 8 (2007) - [j4]Lucía Conde, David Montaner, Jordi Burguet-Castell, Joaquín Tárraga, Ignacio Medina, Fátima Al-Shahrour, Joaquín Dopazo:
ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling. Nucleic Acids Res. 35(Web-Server-Issue): 81-85 (2007) - [j3]Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo:
FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments. Nucleic Acids Res. 35(Web-Server-Issue): 91-96 (2007) - 2006
- [j2]Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, David Montaner, Eva Alloza, Juan M. Vaquerizas, Lucía Conde, Christian Blaschke, Javier Vera, Joaquín Dopazo:
BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments. Nucleic Acids Res. 34(Web-Server-Issue): 472-476 (2006) - [j1]David Montaner, Joaquín Tárraga, Jaime Huerta-Cepas, Jordi Burguet-Castell, Juan M. Vaquerizas, Lucía Conde, Pablo Minguez, Javier Vera, Sach Mukherjee, Joan Valls, Miguel A. G. Pujana, Eva Alloza, Javier Herrero, Fátima Al-Shahrour, Joaquín Dopazo:
Next station in microarray data analysis: GEPAS. Nucleic Acids Res. 34(Web-Server-Issue): 486-491 (2006)
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