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ORCIDSven Bergmann
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2020 – today
- 2023
[j18]Daniel Krefl, Alessandro Brandulas Cammarata
, Sven Bergmann:
PascalX: a Python library for GWAS gene and pathway enrichment tests. Bioinform. 39(5) (2023)- 2022
- [j17]Micha Hersch, Adriano Biasini, Ana C. Marques, Sven Bergmann:
Estimating RNA dynamics using one time point for one sample in a single-pulse metabolic labeling experiment. BMC Bioinform. 23(1): 147 (2022) - [j16]Daniel Krefl, Sven Bergmann:
Cross-GWAS coherence test at the gene and pathway level. PLoS Comput. Biol. 18(9): 1010517 (2022) - 2020
- [j15]Mattia Tomasoni, Sergio Gómez, Jake Crawford, Weijia Zhang, Sarvenaz Choobdar, Daniel Marbach, Sven Bergmann:
MONET: a toolbox integrating top-performing methods for network modularization. Bioinform. 36(12): 3920-3921 (2020)
2010 – 2019
- 2019
- [j14]Payam Emami Khoonsari, Pablo A. Moreno, Sven Bergmann, Joachim Burman, Marco Capuccini, Matteo Carone, Marta Cascante, Pedro de Atauri, Carles Foguet, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Sijin He, Stephanie Herman, David Johnson, Namrata Kale, Anders Larsson, Steffen Neumann, Kristian Peters, Luca Pireddu, Philippe Rocca-Serra, Pierrick Roger, Rico Rueedi, Christoph Ruttkies, Noureddin Sadawi, Reza M. Salek, Susanna-Assunta Sansone, Daniel Schober, Vitaly A. Selivanov, Etienne A. Thévenot, Michael van Vliet, Gianluigi Zanetti, Christoph Steinbeck, Kim Kultima, Ola Spjuth:
Interoperable and scalable data analysis with microservices: applications in metabolomics. Bioinform. 35(19): 3752-3760 (2019) - 2017
- [j13]David Lamparter, Daniel Marbach, Rico Rueedi, Sven Bergmann, Zoltán Kutalik:
Genome-Wide Association between Transcription Factor Expression and Chromatin Accessibility Reveals Regulators of Chromatin Accessibility. PLoS Comput. Biol. 13(1) (2017) - [j12]Rico Rueedi, Roger Mallol, Johannes Raffler, David Lamparter, Nele Friedrich, Peter Vollenweider, Gérard Waeber, Gabi Kastenmüller, Zoltán Kutalik, Sven Bergmann:
Metabomatching: Using genetic association to identify metabolites in proton NMR spectroscopy. PLoS Comput. Biol. 13(12) (2017) - 2016
- [j11]David Lamparter, Daniel Marbach, Rico Rueedi, Zoltán Kutalik, Sven Bergmann:
Fast and Rigorous Computation of Gene and Pathway Scores from SNP-Based Summary Statistics. PLoS Comput. Biol. 12(1) (2016) - 2014
- [j10]Heinz Stockinger, Adrian M. Altenhoff, Konstantin Arnold, Amos Bairoch, Frederic B. Bastian, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane, Philippe Le Mercier, Frédérique Lisacek, Olivier Michielin, Patricia M. Palagi, Jacques Rougemont, Torsten Schwede, Christian von Mering, Erik van Nimwegen, Daniel Walther, Ioannis Xenarios, Mihaela Zavolan, Evgeny M. Zdobnov, Vincent Zoete, Ron D. Appel:
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. Nucleic Acids Res. 42(Webserver-Issue): 436-441 (2014) - 2012
- [j9]Barbara Piasecka, Marc Robinson-Rechavi, Sven Bergmann:
Correcting for the bias due to expression specificity improves the estimation of constrained evolution of expression between mouse and human. Bioinform. 28(14): 1865-1872 (2012) - [j8]Micha Hersch, Aude Billard, Sven Bergmann:
Iterative Estimation of Rigid-Body Transformations - Application to Robust Object Tracking and Iterative Closest Point. J. Math. Imaging Vis. 43(1): 1-9 (2012) - 2011
- [j7]Charlotte N. Henrichsen, Gábor Csárdi, Marie-Thérèse Zabot, Carmela Fusco, Sven Bergmann, Giuseppe Merla, Alexandre Reymond:
Using Transcription Modules to Identify Expression Clusters Perturbed in Williams-Beuren Syndrome. PLoS Comput. Biol. 7(1) (2011) - [c3]Alex Alon, Sven Bergmann:
Connecting Points by Smooth Connection Functions Defines Shapes in the Smoothest Possible Way. SHAPES 2011 - [c2]Aitana Morton de Lachapelle, Sven Bergmann:
A New Scaling Measure Quantifies the Conservation of Proportions of Gene Expression Profiles in Developing Organic Shapes. SHAPES 2011 - 2010
- [j6]Robin Liechti, Gábor Csárdi, Sven Bergmann, Frédéric Schütz, Thierry Sengstag, Sylvia F. Boj, Joan-Marc Servitja, Jorge Ferrer, Leentje Van Lommel, Frans Schuit, Sonia Klinger, Bernard Thorens, Najib Naamane, Decio L. Eizirik, Lorella Marselli, Marco Bugliani, Piero Marchetti, Stephanie Lucas, Cecilia Holm, C. Victor Jongeneel, Ioannis Xenarios:
EuroDia: a beta-cell gene expression resource. Database J. Biol. Databases Curation 2010 (2010) - [j5]Gábor Csárdi, Zoltán Kutalik, Sven Bergmann:
Modular analysis of gene expression data with R. Bioinform. 26(10): 1376-1377 (2010) - [j4]Thierry Schüpbach, Ioannis Xenarios, Sven Bergmann, Karen Kapur:
FastEpistasis: a high performance computing solution for quantitative trait epistasis. Bioinform. 26(11): 1468-1469 (2010) - [j3]Andreas Lüscher, Gábor Csárdi, Aitana Morton de Lachapelle, Zoltán Kutalik, Bastian Peter, Sven Bergmann:
ExpressionView - an interactive viewer for modules identified in gene expression data. Bioinform. 26(16): 2062-2063 (2010)
2000 – 2009
- 2006
- [c1]Stefan Breuer, Sven Bergmann, Ralf Dragon, Sebastian Möller:
Set-up of a Unit-Selection Synthesis with a Prominent Voice. LREC 2006: 293-296 - 2004
- [j2]Jan Ihmels, Sven Bergmann:
Challenges and prospects in the analysis of large-scale gene expression data. Briefings Bioinform. 5(4): 313-327 (2004) - [j1]Jan Ihmels, Sven Bergmann, Naama Barkai:
Defining transcription modules using large-scale gene expression data. Bioinform. 20(13): 1993-2003 (2004)
Coauthor Index
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