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ORCIDNicola J. Mulder
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- affiliation: University of Cape Town, South Africa
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2020 – today
- 2024
[j62]Anmol M. Kiran, Mariem Hanachi
, Nihad Alsayed, Meriem Fassatoui, Ovokeraye Achinike-Oduaran, Imane Allali, Suresh Maslamoney, Ayton Meintjes, Lyndon Zass, Jorge Da Rocha, Rym Kefi, Alia Benkahla, Kais Ghedira, Sumir Panji, Nicola J. Mulder, Faisal M. Fadlelmola, Oussema Souiai:
The African Human Microbiome Portal: a public web portal of curated metagenomic metadata. Database J. Biol. Databases Curation 2024 (2024)- [j61]Lyndon Zass, Lamech M. Mwapagha, Adetola F. Louis-Jacques, Imane Allali, Julius Mulindwa, Anmol M. Kiran, Mariem Hanachi, Oussama Souiai, Nicola J. Mulder, Ovokeraye Achinike-Oduaran:
Advancing microbiome research through standardized data and metadata collection: introducing the Microbiome Research Data Toolkit. Database J. Biol. Databases Curation 2024 (2024) - 2023
- [j60]Stephanie O. M. Dyke, Kathleen Connor, Victoria Nembaware, Nchangwi S. Munung, Kathy Reinold, Giselle Kerry, Mamana Mbiyavanga, Lyndon Zass, Mauricio Moldes, Samir Das, John Mike Davis, Jordi Rambla De Argila, J. Dylan Spalding, Alan C. Evans, Nicola J. Mulder, Jason Karamchandani:
Consent Codes: Maintaining Consent in an Ever-expanding Open Science Ecosystem. Neuroinformatics 21(1): 89-100 (2023) - [j59]Matthys G. Potgieter, Andrew J. M. Nel, Suereta Fortuin, Shaun Garnett, Jerome M. Wendoh, David L. Tabb, Nicola J. Mulder, Jonathan M. Blackburn:
MetaNovo: An open-source pipeline for probabilistic peptide discovery in complex metaproteomic datasets. PLoS Comput. Biol. 19(6) (2023) - 2022
- [j58]Gaston K. Mazandu, Jade Hotchkiss, Victoria Nembaware, Ambroise Wonkam, Nicola J. Mulder:
The Sickle Cell Disease Ontology: recent development and expansion of the universal sickle cell knowledge representation. Database J. Biol. Databases Curation 2022(2022) (2022) - [j57]Benjamin L. Moore, Patricia Carvajal López, Paballo Abel Chauke, Marco Cristancho, Victoria Dominguez Del Angel, Selene L. Fernandez-Valverde, Amel Ghouila, Piraveen Gopalasingam, Fatma Zahra Guerfali, Alice Matimba, Sarah L. Morgan, Guilherme Oliveira, Verena Ras, Alejandro Reyes, Javier De Las Rivas, Nicola J. Mulder:
Correction: Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries. PLoS Comput. Biol. 18(5) (2022) - 2021
- [j56]Gaston K. Mazandu, Christopher Hooper, Kenneth Opap, Funmilayo L. Makinde, Victoria Nembaware, Nicholas E. Thomford, Emile R. Chimusa, Ambroise Wonkam, Nicola J. Mulder:
IHP-PING - generating integrated human protein-protein interaction networks on-the-fly. Briefings Bioinform. 22(4) (2021) - [j55]Funmilayo L. Makinde, Milaine S. S. Tchamga, James Jafali, Segun A. Fatumo, Emile R. Chimusa, Nicola J. Mulder, Gaston K. Mazandu:
Reviewing and assessing existing meta-analysis models and tools. Briefings Bioinform. 22(6) (2021) - [j54]Faisal M. Fadlelmola, Kais Ghedira, Yosr Hamdi, Mariem Hanachi, Fouzia Radouani, Imane Allali, Anmol M. Kiran, Lyndon Zass, Nihad Alsayed, Meriem Fassatoui, Chaimae Samtal, Samah Ahmed, Jorge Da Rocha, Souad Chaqsare, Reem M. Sallam, Melek Chaouch, Mohammed Farahat, Alfred Ssekagiri, Ziyaad Parker, Mai Adil, Michael Turkson, Aymen Benchaalia, Alia Benkahla, Sumir Panji, Samar Kamal Kassim, Oussema Souiai, Nicola J. Mulder:
H3ABioNet genomic medicine and microbiome data portals hackathon proceedings. Database J. Biol. Databases Curation 2021 (2021) - [j53]Faisal M. Fadlelmola, Lyndon Zass, Melek Chaouch, Chaimae Samtal, Verena Ras, Judit Kumuthini, Sumir Panji, Nicola J. Mulder:
Data Management Plans in the genomics research revolution of Africa: Challenges and recommendations. J. Biomed. Informatics 122: 103900 (2021) - [j52]Verena Ras, Gerrit Botha, Shaun Aron, Katie Lennard, Imane Allali, Shantelle Claassen-Weitz, Kilaza Samson Mwaikono, Dane Kennedy, Jessica R. Holmes, Gloria Rendon, Sumir Panji, Christopher J. Fields, Nicola J. Mulder:
Using a multiple-delivery-mode training approach to develop local capacity and infrastructure for advanced bioinformatics in Africa. PLoS Comput. Biol. 17(2) (2021) - [j51]Benjamin L. Moore, Patricia Carvajal López, Paballo Abel Chauke, Marco Cristancho, Victoria Dominguez Del Angel, Selene L. Fernandez-Valverde, Amel Ghouila, Piraveen Gopalasingam, Fatma Zahra Guerfali, Alice Matimba, Sarah L. Morgan, Guilherme Oliveira, Verena Ras, Alejandro Reyes, Javier De Las Rivas, Nicola J. Mulder:
Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries. PLoS Comput. Biol. 17(8) (2021) - [j50]Shaun Aron, C. Victor Jongeneel, Paballo Abel Chauke, Melek Chaouch, Judit Kumuthini, Lyndon Zass, Fouzia Radouani, Samar Kamal Kassim, Faisal M. Fadlelmola, Nicola J. Mulder:
Ten simple rules for developing bioinformatics capacity at an academic institution. PLoS Comput. Biol. 17(12) (2021) - 2020
- [j49]Ephifania Geza, Nicola J. Mulder, Emile R. Chimusa, Gaston K. Mazandu:
FRANC: a unified framework for multi-way local ancestry deconvolution with high density SNP data. Briefings Bioinform. 21(5): 1837-1845 (2020)
2010 – 2019
- 2019
- [j48]Ephifania Geza, Jacquiline W. Mugo, Nicola J. Mulder, Ambroise Wonkam, Emile R. Chimusa, Gaston K. Mazandu:
A comprehensive survey of models for dissecting local ancestry deconvolution in human genome. Briefings Bioinform. 20(5): 1709-1724 (2019) - [j47]Jon Mitchell Ambler, Shandukani Mulaudzi, Nicola J. Mulder:
GenGraph: a python module for the simple generation and manipulation of genome graphs. BMC Bioinform. 20(1): 519:1-519:8 (2019) - [j46]Judit Kumuthini, Lyndon Zass, Sumir Panji, Samson P. Salifu, Jonathan K. Kayondo, Victoria Nembaware, Mamana Mbiyavanga, Ajayi Olabode, Ali Kishk, Gordon Wells, Nicola J. Mulder:
The H3ABioNet helpdesk: an online bioinformatics resource, enhancing Africa's capacity for genomics research. BMC Bioinform. 20(1): 741 (2019) - [j45]Judit Kumuthini, Lyndon Zass, Melek Chaouch, Michael Thompson, Paul Olowoyo, Mamana Mbiyavanga, Moyinoluwalogo Faniyan, Gordon Wells, Victoria Nembaware, Nicola J. Mulder, Mayowa Owolabi:
Proposed Guideline for Minimum Information Stroke Research and Clinical Data Reporting. Data Sci. J. 18: 26 (2019) - [j44]Ziyaad Parker, Suresh Maslamoney, Ayton Meintjes, Gerrit Botha, Sumir Panji, Scott Hazelhurst, Nicola J. Mulder:
Building Infrastructure for African Human Genomic Data Management. Data Sci. J. 18: 47 (2019) - [j43]Faisal M. Fadlelmola, Sumir Panji, Azza E. Ahmed, Amel Ghouila, Wisdom A. Akurugu, Jean-Baka Domelevo Entfellner, Oussema Souiai, Nicola J. Mulder, H3ABioNet Consortium:
Ten simple rules for organizing a webinar series. PLoS Comput. Biol. 15(4) (2019) - [i3]John D. Van Horn, Sumiko Abe, José Luis Ambite, Teresa K. Attwood, Niall Beard, Louisa Bellis, Avnish Bhattrai, Alex A. T. Bui, Gully Burns, Lily Fierro, Jonathan Gordon, Jeffrey S. Grethe, Jeana Kamdar, Xiaoyu Lei, Kristina Lerman, Annette McGrath, Nicola J. Mulder, Caroline O'Driscoll, Crystal Stewart, Sonika Tyagi:
Advancing the international data science workforce through shared training and education. F1000Research 8: 251 (2019) - 2018
- [j42]Gaston K. Mazandu, Emile R. Chimusa, Kayleigh Rutherford, Elsa-Gayle Zekeng, Zoe Z. Gebremariam, Maryam Y. Onifade, Nicola J. Mulder:
Large-scale data-driven integrative framework for extracting essential targets and processes from disease-associated gene data sets. Briefings Bioinform. 19(6): 1141-1152 (2018) - [j41]Shakuntala Baichoo, Yassine Souilmi, Sumir Panji, Gerrit Botha, Ayton Meintjes, Scott Hazelhurst, Hocine Bendou, Eugene de Beste, Phelelani T. Mpangase, Oussema Souiai, Mustafa Alghali, Long Yi, Brian D. O'Connor, Michael R. Crusoe, Don Armstrong, Shaun Aron, Fourie Joubert, Azza E. Ahmed, Mamana Mbiyavanga, Peter van Heusden, Lerato E. Magosi, Jennie Zermeno, Liudmila S. Mainzer, Faisal M. Fadlelmola, C. Victor Jongeneel, Nicola J. Mulder:
Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics. BMC Bioinform. 19(1): 457:1-457:13 (2018) - [j40]Nicola J. Mulder, Russell Schwartz, Michelle D. Brazas, Cath Brooksbank, Bruno A. Gaëta, Sarah L. Morgan, Mark A. Pauley, Anne G. Rosenwald, Gabriella Rustici, Michael L. Sierk, Tandy J. Warnow, Lonnie R. Welch:
The development and application of bioinformatics core competencies to improve bioinformatics training and education. PLoS Comput. Biol. 14(2) (2018) - [j39]Ryman Shoko, Justen Manasa, Mcebisi Maphosa, Joshua Mbanga, Reagan Mudziwapasi, Victoria Nembaware, Walter T. Sanyika, Tawanda Tinago, Zedias Chikwambi, Cephas Mawere, Alice Matimba, Grace Mugumbate, Jonathan Mufandaedza, Nicola J. Mulder, Hugh Patterton:
Strategies and opportunities for promoting bioinformatics in Zimbabwe. PLoS Comput. Biol. 14(11) (2018) - [c5]Samar S. M. Elsheikh, Emile R. Chimusa, Nicola J. Mulder, Alessandro Crimi:
Relating connectivity changes in brain networks to genetic information in Alzheimer patients. ISBI 2018: 1390-1393 - [c4]Samar S. M. Elsheikh, Spyridon Bakas, Nicola J. Mulder, Emile R. Chimusa, Christos Davatzikos, Alessandro Crimi:
Multi-stage Association Analysis of Glioblastoma Gene Expressions with Texture and Spatial Patterns. BrainLes@MICCAI (1) 2018: 239-250 - 2017
- [j38]Gaston K. Mazandu, Emile R. Chimusa, Nicola J. Mulder:
Gene Ontology semantic similarity tools: survey on features and challenges for biological knowledge discovery. Briefings Bioinform. 18(5): 886-901 (2017) - [j37]Jacquiline W. Mugo, Ephifania Geza, Joel Defo, Samar S. M. Elsheikh, Gaston K. Mazandu, Nicola J. Mulder, Emile R. Chimusa:
A multi-scenario genome-wide medical population genetics simulation framework. Bioinform. 33(19): 2995-3002 (2017) - [j36]Nicola J. Mulder, Clement A. Adebamowo, Sally N. Adebamowo, Oladimeji Adebayo, Osimhiarherhuo Adeleye, Mohamed Alibi, Shakuntala Baichoo, Alia Benkahla, Faisal M. Fadlelmola, Hassan Ghazal, Kais Ghedira, Alice Matimba, Ahmed Moussa, Zahra Mungloo-Dilmohamud, Mayowa Owolabi, Fouzia Radouani, Charles Rotimi, Dan J. Stein, Oussama Souiai:
Genomic Research Data Generation, Analysis and Sharing - Challenges in the African Setting. Data Sci. J. 16: 49 (2017) - [j35]Bruno A. Gaëta, Javier De Las Rivas, Paul Horton, Pieter Meysman, Nicola J. Mulder, Paolo Romano, Lonnie R. Welch:
Ten simple rules for forming a scientific professional society. PLoS Comput. Biol. 13(3) (2017) - [j34]C. Victor Jongeneel, Ovokeraye Achinike-Oduaran, Ezekiel F. Adebiyi, Marion O. Adebiyi, Seun Adeyemi, Bola Akanle, Shaun Aron, Efejiro Ashano, Hocine Bendou, Gerrit Botha, Emile R. Chimusa, Ananyo Choudhury, Ravikiran Donthu, Jenny Drnevich, Oluwadamilare Falola, Christopher J. Fields, Scott Hazelhurst, Liesl Hendry, Itunuoluwa Isewon, Radhika S. Khetani, Judit Kumuthini, Magambo Phillip Kimuda, Lerato E. Magosi, Liudmila S. Mainzer, Suresh Maslamoney, Mamana Mbiyavanga, Ayton Meintjes, Danny Mugutso, Phelelani T. Mpangase, Richard Munthali, Victoria Nembaware, Andrew Ndhlovu, Trust Odia, Adaobi Okafor, Olaleye Oladipo, Sumir Panji, Venesa Pillay, Gloria Rendon, Dhriti Sengupta, Nicola J. Mulder:
Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network. PLoS Comput. Biol. 13(6) (2017) - [j33]Kim T. Gurwitz, Shaun Aron, Sumir Panji, Suresh Maslamoney, Pedro L. Fernandes, David P. Judge, Amel Ghouila, Jean-Baka Domelevo Entfellner, Fatma Z. Guerfali, Colleen Saunders, Ahmed Mansour Alzohairy, Samson P. Salifu, Rehab Ahmed, Ruben Cloete, Jonathan K. Kayondo, Deogratius Ssemwanga, Nicola J. Mulder, H3ABioNet Consortium:
Designing a course model for distance-based online bioinformatics training in Africa: The H3ABioNet experience. PLoS Comput. Biol. 13(10) (2017) - [i2]Rafael C. Jiménez, Mateusz Kuzak, Monther Alhamdoosh, Michelle Barker, Bérénice Batut, Mikael Borg, Salvador Capella-Gutiérrez, Neil P. Chue Hong, Martin Cook, Manuel Corpas, Madison Flannery, Leyla J. García, Josep Lluis Gelpí, Simon L. Gladman, Carole A. Goble, Montserrat González Ferreiro, Alejandra N. González-Beltrán, Philippa C. Griffin, Björn A. Grüning, Jonas Hagberg, Petr Holub, Rob W. W. Hooft, Jon C. Ison, Daniel S. Katz, Brane Leskosek, Federico López-Gómez, Luis J. Oliveira, David Mellor, Rowland Mosbergen, Nicola J. Mulder, Yasset Pérez-Riverol, Robert Pergl, Horst Pichler, Bernard J. Pope, Ferran Sanz, Maria Victoria Schneider, Victoria Stodden, Radoslaw Suchecki, Radka Svobodová Vareková, Harry-Anton Talvik, Ilian T. Todorov, Andrew E. Treloar, Sonika Tyagi, Maarten van Gompel, Daniel Vaughan, Allegra Via, Xiaochuan Wang, Nathan S. Watson-Haigh, Steve Crouch:
Four simple recommendations to encourage best practices in research software. F1000Research 6: 876- (2017) - 2016
- [j32]Gaston K. Mazandu, Emile R. Chimusa, Mamana Mbiyavanga, Nicola J. Mulder:
A-DaGO-Fun: an adaptable Gene Ontology semantic similarity-based functional analysis tool. Bioinform. 32(3): 477-479 (2016) - [j31]Emile R. Chimusa, Mamana Mbiyavanga, Gaston K. Mazandu, Nicola J. Mulder:
ancGWAS: a post genome-wide association study method for interaction, pathway and ancestry analysis in homogeneous and admixed populations. Bioinform. 32(4): 549-556 (2016) - [j30]Nicola J. Mulder, Alan Christoffels, Tulio de Oliveira, Junaid Gamieldien, Scott Hazelhurst, Fourie Joubert, Judit Kumuthini, Ché S. Pillay, Jacky L. Snoep, Özlem Tastan Bishop, Nicki Tiffin:
The Development of Computational Biology in South Africa: Successes Achieved and Lessons Learnt. PLoS Comput. Biol. 12(2) (2016) - [j29]Lonnie R. Welch, Cath Brooksbank, Russell Schwartz, Sarah L. Morgan, Bruno A. Gaëta, Alastair M. Kilpatrick, Daniel Mietchen, Benjamin L. Moore, Nicola J. Mulder, Mark A. Pauley, William R. Pearson, Predrag Radivojac, Naomi Rosenberg, Anne G. Rosenwald, Gabriella Rustici, Tandy J. Warnow:
Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB's Education Committee). PLoS Comput. Biol. 12(5) (2016) - 2015
- [j28]Özlem Tastan Bishop, Ezekiel F. Adebiyi, Ahmed M. Alzohairy, Dean Everett, Kais Ghedira, Amel Ghouila, Judit Kumuthini, Nicola J. Mulder, Sumir Panji, Hugh-George Patterton:
Bioinformatics Education - Perspectives and Challenges out of Africa. Briefings Bioinform. 16(2): 355-364 (2015) - [j27]Aidan Budd, Manuel Corpas, Michelle D. Brazas, Jonathan C. Fuller, Jeremy Goecks, Nicola J. Mulder, Magali Michaut, B. F. Francis Ouellette, Aleksandra Pawlik, Niklas Blomberg:
A Quick Guide for Building a Successful Bioinformatics Community. PLoS Comput. Biol. 11(2) (2015) - [j26]Teresa K. Attwood, Erik Bongcam-Rudloff, Michelle D. Brazas, Manuel Corpas, Pascale Gaudet, Fran Lewitter, Nicola J. Mulder, Patricia M. Palagi, Maria Victoria Schneider, Celia W. G. van Gelder:
GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training. PLoS Comput. Biol. 11(4) (2015) - 2014
- [j25]Gustavo A. Salazar, Ayton Meintjes, Gaston K. Mazandu, Holifidy A. Rapanoël, Richard O. Akinola, Nicola J. Mulder:
A web-based protein interaction network visualizer. BMC Bioinform. 15: 129 (2014) - [i1]Gustavo A. Salazar, Ayton Meintjes, Nicola J. Mulder:
PPI layouts: BioJS components for the display of Protein-Protein Interactions. F1000Research 3: 50 (2014) - 2013
- [j24]Allegra Via, Thomas Blicher, Erik Bongcam-Rudloff, Michelle D. Brazas, Catherine Brooksbank, Aidan Budd, Javier De Las Rivas, Jacqueline Dreyer, Pedro L. Fernandes, Celia W. G. van Gelder, Joachim Jacob, Rafael C. Jiménez, Jane E. Loveland, Federico Morán, Nicola J. Mulder, Tommi H. Nyrönen, Kristian Rother, Maria Victoria Schneider, Teresa K. Attwood:
Best practices in bioinformatics training for life scientists. Briefings Bioinform. 14(5): 528-537 (2013) - [j23]Rafael C. Jiménez, Juan P. Albar, Jong Bhak, Marie-Claude Blatter, Thomas Blicher, Michelle D. Brazas, Catherine Brooksbank, Aidan Budd, Javier De Las Rivas, Jacqueline Dreyer, Marc A. van Driel, Michael J. Dunn, Pedro L. Fernandes, Celia W. G. van Gelder, Henning Hermjakob, Vassilios Ioannidis, David Phillip Judge, Pascal Kahlem, Eija Korpelainen, Hans-Joachim Kraus, Jane E. Loveland, Christine Mayer, Jennifer McDowall, Federico Morán, Nicola J. Mulder, Tommi H. Nyrönen, Kristian Rother, Gustavo A. Salazar, Reinhard Schneider, Allegra Via, Jose M. Villaveces, Ping Yu, Maria Victoria Schneider, Teresa K. Attwood, Manuel Corpas:
iAnn: an event sharing platform for the life sciences. Bioinform. 29(15): 1919-1921 (2013) - [j22]Gaston K. Mazandu, Nicola J. Mulder:
DaGO-Fun: tool for Gene Ontology-based functional analysis using term information content measures. BMC Bioinform. 14: 284 (2013) - [c3]Carl Barton, Costas S. Iliopoulos, Nicola J. Mulder, Bruce W. Watson:
Identification of All Exact and Approximate Inverted Repeats in Regular and Weighted Sequences. EANN (2) 2013: 11-19 - 2012
- [j21]Gaston K. Mazandu, Nicola J. Mulder:
A Topology-Based Metric for Measuring Term Similarity in the Gene Ontology. Adv. Bioinformatics 2012: 975783:1-975783:17 (2012) - [j20]Sarah W. Burge, Elizabeth Kelly, David Lonsdale, Prudence Mutowo-Meullenet, Craig McAnulla, Alex L. Mitchell, Amaia Sangrador-Vegas, Siew-Yit Yong, Nicola J. Mulder, Sarah Hunter:
Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Database J. Biol. Databases Curation 2012 (2012) - [j19]Sarah Hunter, Philip Jones, Alex L. Mitchell, Rolf Apweiler, Teresa K. Attwood, Alex Bateman, Thomas Bernard, David Binns, Peer Bork, Sarah W. Burge, Edouard De Castro, Penny C. Coggill, Matthew Corbett, Ujjwal Das, Louise C. Daugherty, Lauranne Duquenne, Robert D. Finn, Matthew Fraser, Julian Gough, Daniel H. Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Ivica Letunic, David Lonsdale, Rodrigo Lopez, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Conor McMenamin, Huaiyu Mi, Prudence Mutowo-Meullenet, Nicola J. Mulder, Darren A. Natale, Christine A. Orengo, Sebastien Pesseat, Marco Punta, Antony F. Quinn, Catherine Rivoire, Amaia Sangrador-Vegas, Jeremy D. Selengut, Christian J. A. Sigrist, Maxim Scheremetjew, John G. Tate, Manjulapramila Thimmajanarthanan, Paul D. Thomas, Cathy H. Wu, Corin Yeats, Siew-Yit Yong:
InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res. 40(Database-Issue): 306-312 (2012) - 2011
- [j18]Gaston K. Mazandu, Nicola J. Mulder:
Generation and Analysis of Large-Scale Data-Driven Mycobacterium tuberculosis Functional Networks for Drug Target Identification. Adv. Bioinformatics 2011: 801478:1-801478:14 (2011) - [j17]Ludwig Geistlinger, Gergely Csaba, Robert Küffner, Nicola J. Mulder, Ralf Zimmer:
From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems. Bioinform. 27(13): 366-373 (2011) - [j16]Jose M. Villaveces, Rafael C. Jiménez, Leyla J. García, Gustavo A. Salazar, Bernat Gel, Nicola J. Mulder, Maria Jesus Martin, Alexander García Castro, Henning Hermjakob:
Dasty3, a WEB framework for DAS. Bioinform. 27(18): 2616-2617 (2011) - [j15]Andre J. Faure, Cathal Seoighe, Nicola J. Mulder:
Investigating the effect of paralogs on microarray gene-set analysis. BMC Bioinform. 12: 29 (2011) - [j14]Gustavo A. Salazar, Rafael C. Jiménez, Alexander García Castro, Henning Hermjakob, Nicola J. Mulder, Edwin H. Blake:
DAS Writeback: A Collaborative Annotation System. BMC Bioinform. 12: 143 (2011)
2000 – 2009
- 2009
- [j13]Sarah Hunter, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Ujjwal Das, Louise C. Daugherty, Lauranne Duquenne, Robert D. Finn, Julian Gough, Daniel H. Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Aurélie Laugraud, Ivica Letunic, David Lonsdale, Rodrigo Lopez, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex L. Mitchell, Nicola J. Mulder, Darren A. Natale, Christine A. Orengo, Antony F. Quinn, Jeremy D. Selengut, Christian J. A. Sigrist, Manjula Thimma, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats:
InterPro: the integrative protein signature database. Nucleic Acids Res. 37(Database-Issue): 211-215 (2009) - 2007
- [j12]Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Virginie Buillard, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Louise C. Daugherty, Mark Dibley, Robert D. Finn, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicolas Hulo, Sarah Hunter, Daniel Kahn, Alexander Kanapin, Anish Kejariwal, Alberto Labarga, Petra S. Langendijk-Genevaux, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex L. Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Christine A. Orengo, Robert Petryszak, Jeremy D. Selengut, Christian J. A. Sigrist, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats:
New developments in the InterPro database. Nucleic Acids Res. 35(Database-Issue): 224-228 (2007) - 2005
- [j11]Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Paul Bradley, Peer Bork, Phillip Bucher, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Jennifer McDowall, Alex L. Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Marco Pagni, Chris P. Ponting, Emmanuel Quevillon, Jeremy D. Selengut, Christian J. A. Sigrist, Ville Silventoinen, David J. Studholme, Robert Vaughan, Cathy H. Wu:
InterPro, progress and status in 2005. Nucleic Acids Res. 33(Database-Issue): 201-205 (2005) - [j10]Emmanuel Quevillon, Ville Silventoinen, Sharmila Pillai, Nicola Harte, Nicola J. Mulder, Rolf Apweiler, Rodrigo Lopez:
InterProScan: protein domains identifier. Nucleic Acids Res. 33(Web-Server-Issue): 116-120 (2005) - 2003
- [j9]Catherine Brooksbank, Evelyn Camon, Midori A. Harris, Michele Magrane, Maria Jesus Martin, Nicola J. Mulder, Claire O'Donovan, Helen E. Parkinson, Mary Ann Tuli, Rolf Apweiler, Ewan Birney, Alvis Brazma, Kim Henrick, Rodrigo Lopez, Guenter Stoesser, Peter Stoehr, Graham Cameron:
The European Bioinformatics Institute's data resources. Nucleic Acids Res. 31(1): 43-50 (2003) - [j8]Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan, Evgeni M. Zdobnov:
The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res. 31(1): 315-318 (2003) - [j7]Manuela Pruess, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Isabelle Phan, Florence Servant, Rolf Apweiler:
The Proteome Analysis database: a tool for the in silico analysis of whole proteomes. Nucleic Acids Res. 31(1): 414-417 (2003) - 2002
- [j6]Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist:
InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites. Briefings Bioinform. 3(3): 225-235 (2002) - [j5]Margaret Biswas, Joseph F. O'Rourke, Evelyn Camon, Gillian Fraser, Alexander Kanapin, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Isabelle Phan, Florence Servant, Rolf Apweiler:
Applications of InterPro in Protein Annotation and Genome Analysis. Briefings Bioinform. 3(3): 285-295 (2002) - [j4]Alexander Kanapin, Rolf Apweiler, Margaret Biswas, Wolfgang Fleischmann, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Thomas M. Oinn, Isabelle Phan, Florence Servant, Evgeni M. Zdobnov:
Interactive InterPro-based comparisons of proteins in whole genomes. Bioinform. 18(2): 374-375 (2002) - [c2]Rolf Apweiler, Margaret Biswas, Wolfgang Fleischmann, Evgenia V. Kriventseva, Nicola J. Mulder:
Automation of Protein Sequence Characterization and Its Application in Whole Proteome Analysis. Gene Regulations and Metabolism 2002: 19-47 - 2001
- [j3]Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov:
The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res. 29(1): 37-40 (2001) - [j2]Rolf Apweiler, Margaret Biswas, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Isabelle Phan, Evgeni M. Zdobnov:
Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes. Nucleic Acids Res. 29(1): 44-48 (2001) - 2000
- [j1]Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov:
InterPro-an integrated documentation resource for protein families, domains and functional sites. Bioinform. 16(12): 1145-1150 (2000) - [c1]Margaret Biswas, Rolf Apweiler, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Thomas M. Oinn, Isabelle Phan, Evgeni M. Zdobnov:
Proteome Analysis: Application of InterPro and CluSTr for the Functional Classification of Proteins in Whole Genomes. German Conference on Bioinformatics 2000: 149-158
Coauthor Index
Terri K. Attwood
aka: Teresa K. Attwood
aka: Teresa K. Attwood
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