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ORCIDFrontiers in Neuroinformatics, Volume 13
Volume 13, 2019
- David N. Kennedy
, Sanu Ann Abraham, Julianna F. Bates, Albert Crowley, Satrajit S. Ghosh, Tom Gillespie, Mathias Goncalves, Jeffrey S. Grethe, Yaroslav O. Halchenko, Michael Hanke, Christian Haselgrove, Steven M. Hodge, Dorota Jarecka, Jakub Kaczmarzyk, David B. Keator, Kyle Meyer, Maryann E. Martone, Smruti Padhy, Jean-Baptiste Poline, Nina Preuss, Troy Sincomb, Matt Travers:
Everything Matters: The ReproNim Perspective on Reproducible Neuroimaging. 1 - Artemis Zavaliangos-Petropulu, Talia M. Nir, Sophia I. Thomopoulos, Robert I. Reid, Matt A. Bernstein, Bret J. Borowski, Clifford R. Jack Jr., Michael W. Weiner, Neda Jahanshad, Paul M. Thompson:
Diffusion MRI Indices and Their Relation to Cognitive Impairment in Brain Aging: The Updated Multi-protocol Approach in ADNI3. 2 - Anisha Keshavan, Jean-Baptiste Poline:
From the Wet Lab to the Web Lab: A Paradigm Shift in Brain Imaging Research. 3 - Jie Xiang, Cheng Tian, Yan Niu, Ting Yan, Dandan Li, Rui Cao, Hao Guo, Xiaohong Cui, Huifang Cui, Shuping Tan, Bin Wang:
Abnormal Entropy Modulation of the EEG Signal in Patients With Schizophrenia During the Auditory Paired-Stimulus Paradigm. 4 - Bo-yong Park, Kyoungseob Byeon, Hyunjin Park:
FuNP (Fusion of Neuroimaging Preprocessing) Pipelines: A Fully Automated Preprocessing Software for Functional Magnetic Resonance Imaging. 5 - Wei Wang, Qingyuan He, Jin Hou, Dehua Chui, Mingyong Gao, Aibo Wang, Hongbin Han, Huipo Liu:
Stimulation Modeling on Three-Dimensional Anisotropic Diffusion of MRI Tracer in the Brain Interstitial Space. 6 - Csaba Erö, Marc-Oliver Gewaltig, Daniel Keller, Henry Markram:
Corrigendum: A Cell Atlas for the Mouse Brain. 7 - Shivakeshavan Ratnadurai-Giridharan, Disha Gupta, Ajay Pal, Asht M. Mishra, N. Jeremy Hill, Jason B. Carmel:
Motometrics: A Toolbox for Annotation and Efficient Analysis of Motor Evoked Potentials. 8 - Andrei Irimia, Alexander S. Maher, Kenneth A. Rostowsky, Nahian F. Chowdhury, Darryl H. Hwang, Meng Law:
Brain Segmentation From Computed Tomography of Healthy Aging and Geriatric Concussion at Variable Spatial Resolutions. 9 - Meng Wang, Chunlin Li, Wenjing Zhang, Yonghao Wang, Yuan Feng, Ying Liang, Jing Wei, Xu Zhang, Xia Li, Renji Chen:
Support Vector Machine for Analyzing Contributions of Brain Regions During Task-State fMRI. 10 - Rodrigo Amaducci, Manuel Reyes-Sanchez, Irene Elices, Francisco de Borja Rodríguez, Pablo Varona:
RTHybrid: A Standardized and Open-Source Real-Time Software Model Library for Experimental Neuroscience. 11 - Gregory Kiar, Shawn T. Brown, Tristan Glatard, Alan C. Evans:
A Serverless Tool for Platform Agnostic Computational Experiment Management. 12 - Weina Zhao, Xuetong Wang, Changhao Yin, Mengfei He, Shuyu Li, Ying Han:
Trajectories of the Hippocampal Subfields Atrophy in the Alzheimer's Disease: A Structural Imaging Study. 13 - Etienne Combrisson, Raphael Vallat, Christian O'Reilly, Mainak Jas, Annalisa Pascarella, Anne-Lise Saive, Thomas Thiery, David Meunier, Dmitrii Altukhov, Tarek Lajnef, Perrine Ruby, Aymeric Guillot, Karim Jerbi:
Visbrain: A Multi-Purpose GPU-Accelerated Open-Source Suite for Multimodal Brain Data Visualization. 14 - Andreas Wolfram Henkel, Lulwa A. A. D. Al-Abdullah, Mohammed S. Al-Qallaf, Zoran B. Redzic:
Quantitative Determination of Cellular-and Neurite Motility Speed in Dense Cell Cultures. 15 - Peter V. Kochunov, Binish Patel, Habib Ganjgahi, Brian Donohue, Meghann Ryan, L. Elliot Hong, Xu Chen, Bhim M. Adhikari, Neda Jahanshad, Paul M. Thompson, Dennis van 't Ent, Anouk den Braber, Eco J. C. de Geus, Rachel M. Brouwer, Dorret I. Boomsma, Hilleke E. Hulshoff Pol, Greig I. de Zubicaray, Katie L. McMahon, Nicholas G. Martin, Margaret J. Wright, Thomas E. Nichols:
Homogenizing Estimates of Heritability Among SOLAR-Eclipse, OpenMx, APACE, and FPHI Software Packages in Neuroimaging Data. 16 - Guilin Meng, Yong Huang, Qi Yu, Ying Ding, David J. Wild, Yanxin Zhao, Xueyuan Liu, Min Song:
Adopting Text Mining on Rehabilitation Therapy Repositioning for Stroke. 17 - Sergio Oscar Verduzco-Flores, Erik De Schutter:
Draculab: A Python Simulator for Firing Rate Neural Networks With Delayed Adaptive Connections. 18 - Carlos Fernandez Musoles, Daniel Coca, Paul Richmond:
Communication Sparsity in Distributed Spiking Neural Network Simulations to Improve Scalability. 19 - Peter Höller, Eugen Trinka, Yvonne Höller:
MEEGIPS - A Modular EEG Investigation and Processing System for Visual and Automated Detection of High Frequency Oscillations. 20 - Shengyong Chen, Yu He, Huili Qiu, Xi Yan, Meng Zhao:
Spatial Localization of EEG Electrodes in a TOF+CCD Camera System. 21 - Penghui Song, Hua Lin, Chunyan Liu, Yuanling Jiang, Yicong Lin, Qing Xue, Peng Xu, Yuping Wang:
Transcranial Magnetic Stimulation to the Middle Frontal Gyrus During Attention Modes Induced Dynamic Module Reconfiguration in Brain Networks. 22 - Michael B. Gerber, Alasdair C. McLean, Samuel J. Stephen, Alex G. Chalco, Usman M. Arshad, Gary W. Thickbroom, Josh Silverstein, K. Zoe Tsagaris, Amy Kuceyeski, Kathleen Friel, Taiza E. G. Santos, Dylan J. Edwards:
NeuroMeasure: A Software Package for Quantification of Cortical Motor Maps Using Frameless Stereotaxic Transcranial Magnetic Stimulation. 23 - Thomas H. Haid, Matteo Zago, Arunee Promsri, Aude-Clémence Doix, Peter Federolf:
PManalyzer: A Software Facilitating the Study of Sensorimotor Control of Whole-Body Movements. 24 - Shenghua Cheng, Xiaojun Wang, Yurong Liu, Lei Su, Tingwei Quan, Ning Li, Fangfang Yin, Feng Xiong, Xiaomao Liu, Qingming Luo, Hui Gong, Shaoqun Zeng:
DeepBouton: Automated Identification of Single-Neuron Axonal Boutons at the Brain-Wide Scale. 25 - Ziqi Wang, Kaini Qiao, Guanqun Chen, Danyang Sui, Hao-Ming Dong, Yinshan Wang, Huijie Li, Jie Lu, Xi-Nian Zuo, Ying Han:
Functional Connectivity Changes Across the Spectrum of Subjective Cognitive Decline, Amnestic Mild Cognitive Impairment and Alzheimer's Disease. 26 - Qiangqiang Ouyang, Juan Wu, Zhiyu Shao, Miao Wu, Zhiyong Cao:
A Python Code for Simulating Single Tactile Receptors and the Spiking Responses of Their Afferents. 27 - B. Tyr Fothergill, William Knight, Bernd Carsten Stahl, Inga Ulnicane:
Responsible Data Governance of Neuroscience Big Data. 28 - Anisha Keshavan, Jason D. Yeatman, Ariel Rokem:
Combining Citizen Science and Deep Learning to Amplify Expertise in Neuroimaging. 29 - Hancan Zhu, Feng Shi, Li Wang, Sheng-Che Hung, Meng-Hsiang Chen, Shuai Wang, Weili Lin, Dinggang Shen:
Dilated Dense U-Net for Infant Hippocampus Subfield Segmentation. 30 - Cui Zhao, Ying Liang, Chunlin Li, Runshi Gao, Jing Wei, Rui Zuo, Yihua Zhong, Zhaohui Ren, Xinling Geng, Guojun Zhang, Xu Zhang:
Localization of Epileptogenic Zone Based on Cortico-Cortical Evoked Potential (CCEP): A Feature Extraction and Graph Theory Approach. 31 - Xue Fan, Henry Markram:
A Brief History of Simulation Neuroscience. 32 - Carlos Pérez Leguízamo, Maria del C. Valdés Hernández, Muhammad Febrian Rachmadi, Taku Komura:
Evaluation of Enhanced Learning Techniques for Segmenting Ischaemic Stroke Lesions in Brain Magnetic Resonance Perfusion Images Using a Convolutional Neural Network Scheme. 33 - Sahar Ahmad, Jingfan Fan, Pei Dong, Xiaohuan Cao, Pew-Thian Yap, Dinggang Shen:
Deep Learning Deformation Initialization for Rapid Groupwise Registration of Inhomogeneous Image Populations. 34 - Aaron Shifman, John E. Lewis:
ELFENN: A Generalized Platform for Modeling Ephaptic Coupling in Spiking Neuron Models. 35 - Roozbeh Farhoodi, Benjamin James Lansdell, Konrad Paul Körding:
Quantifying How Staining Methods Bias Measurements of Neuron Morphologies. 36 - Stefano Casali, Elisa Marenzi, Chaitanya Medini, Claudia Casellato, Egidio D'Angelo:
Reconstruction and Simulation of a Scaffold Model of the Cerebellar Network. 37 - Sook-Lei Liew, Lianne Schmaal, Neda Jahanshad:
Editorial: Collaborative Efforts for Understanding the Human Brain. 38 - Keita Watanabe, Tatsuya Haga, Masami Tatsuno, David R. Euston, Tomoki Fukai:
Unsupervised Detection of Cell-Assembly Sequences by Similarity-Based Clustering. 39 - Arturo Martínez-Rodrigo, Beatriz García-Martínez, Luciano Zunino, Raúl Alcaraz, Antonio Fernández-Caballero:
Multi-Lag Analysis of Symbolic Entropies on EEG Recordings for Distress Recognition. 40 - Alessandro Bria, Massimo Bernaschi, Massimiliano Guarrasi, Giulio Iannello:
Exploiting Multi-Level Parallelism for Stitching Very Large Microscopy Images. 41 - Niklas Pallast, Michael Diedenhofen, Stefan Blaschke, Frederique Wieters, Dirk Wiedermann, Mathias Hoehn, Gereon R. Fink, Markus Aswendt:
Processing Pipeline for Atlas-Based Imaging Data Analysis of Structural and Functional Mouse Brain MRI (AIDAmri). 42 - Xuan Gu, Anders Eklund, Evren Özarslan, Hans Knutsson:
Using the Wild Bootstrap to Quantify Uncertainty in Mean Apparent Propagator MRI. 43 - Tao Han, Zhe-Xue Li, Jialin Du, Qilin Zhou, Tao Yu, Chunyan Liu, Yuping Wang:
Ictal High-Frequency Oscillation for Lateralizing Patients With Suspected Bitemporal Epilepsy Using Wavelet Transform and Granger Causality Analysis. 44 - Wessam Al-salman, Yan Li, Peng Wen:
Detection of EEG K-Complexes Using Fractal Dimension of Time Frequency Images Technique Coupled With Undirected Graph Features. 45 - Yueyang Xu, Ashish Raj, Jonathan D. Victor:
Systematic Differences Between Perceptually Relevant Image Statistics of Brain MRI and Natural Images. 46 - Simanto Saha, Md. Shakhawat Hossain, Khawza I. Ahmed, Raqibul Mostafa, Leontios J. Hadjileontiadis, Ahsan Khandoker, Mathias Baumert:
Wavelet Entropy-Based Inter-subject Associative Cortical Source Localization for Sensorimotor BCI. 47 - Andrés Ortiz, Jorge Munilla, Manuel Martínez-Ibañez, Juan Manuel Górriz, Javier Ramírez, Diego Salas-Gonzalez:
Parkinson's Disease Detection Using Isosurfaces-Based Features and Convolutional Neural Networks. 48 - Shengyu Fan, Yueyan Bian, Erling Wang, Yan Kang, Danny J. J. Wang, Qi Yang, Xunming Ji:
An Automatic Estimation of Arterial Input Function Based on Multi-Stream 3D CNN. 49 - Alice Geminiani, Claudia Casellato, Francesca Locatelli, Francesca Prestori, Alessandra Pedrocchi, Egidio D'Angelo:
Corrigendum: Complex Dynamics in Simplified Neuronal Models: Reproducing Golgi Cell Electroresponsiveness. 50 - Stefano Casali, Elisa Marenzi, Chaitanya Medini, Claudia Casellato, Egidio D'Angelo:
Corrigendum: Reconstruction and Simulation of a Scaffold Model of the Cerebellar Network. 51 - Erik B. Bloss, David L. Hunt:
Revealing the Synaptic Hodology of Mammalian Neural Circuits With Multiscale Neurocartography. 52 - Sucheta Chauhan, Lovekesh Vig, Michele De Filippo De Grazia, Maurizio Corbetta, Shandar Ahmad, Marco Zorzi:
A Comparison of Shallow and Deep Learning Methods for Predicting Cognitive Performance of Stroke Patients From MRI Lesion Images. 53 - Bruno R. C. Magalhães, Thomas Sterling, Michael L. Hines, Felix Schürmann:
Asynchronous Branch-Parallel Simulation of Detailed Neuron Models. 54 - Sebastián Castaño-Candamil, Andreas Meinel, Michael Tangermann:
Post-hoc Labeling of Arbitrary M/EEG Recordings for Data-Efficient Evaluation of Neural Decoding Methods. 55 - Raghu Sesha Iyengar, Madhav Vinodh Pithapuram, Avinash Kumar Singh, Mohan Raghavan:
Curated Model Development Using NEUROiD: A Web-Based NEUROmotor Integration and Design Platform. 56 - Valentina A. Unakafova, Alexander Gail:
Comparing Open-Source Toolboxes for Processing and Analysis of Spike and Local Field Potentials Data. 57 - Gianmaria Mancioppi, Laura Fiorini, Marco T. Sportiello, Filippo Cavallo:
Novel Technological Solutions for Assessment, Treatment, and Assistance in Mild Cognitive Impairment. 58 - Felix G. Knorr, Johannes Petzold, Michael Marxen:
PyParadigm - A Python Library to Build Screens in a Declarative Way. 59 - Hosung Kim, Andrei Irimia, Sam Hobel, Mher Pogosyan, Haoteng Tang, Petros Petrosyan, Rita Esquivel Castelo Blanco, Ben A. Duffy, Lu Zhao, Karen L. Crawford, Sook-Lei Liew, Kristi Clark, Meng Law, Pratik Mukherjee, Geoffrey T. Manley, John D. Van Horn, Arthur W. Toga:
The LONI QC System: A Semi-Automated, Web-Based and Freely-Available Environment for the Comprehensive Quality Control of Neuroimaging Data. 60 - John Muschelli:
Recommendations for Processing Head CT Data. 61 - Julia Sprenger, Lyuba Zehl, Jana Pick, Michael Sonntag, Jan Grewe, Thomas Wachtler, Sonja Grün, Michael Denker:
odMLtables: A User-Friendly Approach for Managing Metadata of Neurophysiological Experiments. 62 - Pramod S. Kumbhar, Michael L. Hines, Jeremy Fouriaux, Aleksandr Ovcharenko, James Gonzalo King, Fabien Delalondre, Felix Schürmann:
CoreNEURON : An Optimized Compute Engine for the NEURON Simulator. 63 - Rutger Henri Jacques Fick, Demian Wassermann, Rachid Deriche:
The Dmipy Toolbox: Diffusion MRI Multi-Compartment Modeling and Microstructure Recovery Made Easy. 64 - Maximilian Beier, Thomas Penzel, Dagmar Krefting:
A Performant Web-Based Visualization, Assessment, and Collaboration Tool for Multidimensional Biosignals. 65 - Chai Meei Tyng, Hafeez Ullah Amin, Lila Iznita Izhar, Mohamad Naufal Mohamad Saad, Mohammad Abdul Rahman, Aamir Saeed Malik, Tong Boon Tang:
Exploring EEG Effective Connectivity Network in Estimating Influence of Color on Emotion and Memory. 66 - Patrick McClure, Nao Rho, John A. Lee, Jakub R. Kaczmarzyk, Charles Y. Zheng, Satrajit S. Ghosh, Dylan Nielson, Adam G. Thomas, Peter A. Bandettini, Francisco Pereira:
Knowing What You Know in Brain Segmentation Using Bayesian Deep Neural Networks. 67 - Dezhe Z. Jin, Ting Zhao, David L. Hunt, Rachel P. Tillage, Ching-Lung Hsu, Nelson Spruston:
ShuTu: Open-Source Software for Efficient and Accurate Reconstruction of Dendritic Morphology. 68 - Joshua C. Crone, Manuel M. Vindiola, Alfred B. Yu, David L. Boothe, David Beeman, Kelvin S. Oie, Piotr J. Franaszczuk:
Enabling Large-Scale Simulations With the GENESIS Neuronal Simulator. 69 - Taban Eslami, Vahid Mirjalili, Alvis Cheuk M. Fong, Angela R. Laird, Fahad Saeed:
ASD-DiagNet: A Hybrid Learning Approach for Detection of Autism Spectrum Disorder Using fMRI Data. 70 - Jun Igarashi, Hiroshi Yamaura, Tadashi Yamazaki:
Large-Scale Simulation of a Layered Cortical Sheet of Spiking Network Model Using a Tile Partitioning Method. 71 - Alexandra Badea, Wenlin Wu, Jordan Shuff, Michele Wang, Robert J. Anderson, Yi Qi, G. Allan Johnson, Joan G. Wilson, Serge Koudoro, Eleftherios Garyfallidis, Carol A. Colton, David B. Dunson:
Identifying Vulnerable Brain Networks in Mouse Models of Genetic Risk Factors for Late Onset Alzheimer's Disease. 72 - Grzegorz M. Wójcik, Jolanta Masiak, Andrzej Kawiak, Lukasz Kwasniewicz, Piotr Schneider, Filip Postepski, Anna Gajos-Balinska:
Analysis of Decision-Making Process Using Methods of Quantitative Electroencephalography and Machine Learning Tools. 73 - Ksenia Volkova, Mikhail A. Lebedev, Alexander Kaplan, Alexei Ossadtchi:
Decoding Movement From Electrocorticographic Activity: A Review. 74 - Sharon C. Yates, Nicolaas E. Groeneboom, Christopher Coello, Stefan F. Lichtenthaler, Peer-Hendrik Kuhn, Hans-Ulrich Demuth, Maike Hartlage-Rübsamen, Steffen Roßner, Trygve B. Leergaard, Anna Kreshuk, Maja A. Puchades, Jan G. Bjaalie:
QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. 75 - Xuan Gu, Anders Eklund:
Evaluation of Six Phase Encoding Based Susceptibility Distortion Correction Methods for Diffusion MRI. 76 - Shengyu Fan, Yueyan Bian, Hao Chen, Yan Kang, Qi Yang, Tao Tan:
Unsupervised Cerebrovascular Segmentation of TOF-MRA Images Based on Deep Neural Network and Hidden Markov Random Field Model. 77 - Francesca Mandino, Domenic H. Cerri, Clément M. Garin, Milou Straathof, Geralda A. F. van Tilborg, M. Mallar Chakravarty, Marc Dhenain, Rick M. Dijkhuizen, Alessandro Gozzi, Andreas Hess, Shella D. Keilholz, Jason P. Lerch, Yen-Yu Ian Shih, Joanes Grandjean:
Animal Functional Magnetic Resonance Imaging: Trends and Path Toward Standardization. 78 - Xiaohong Cui, Jihai Xiao, Hao Guo, Bin Wang, Dandan Li, Yan Niu, Jie Xiang, Junjie Chen:
Clustering of Brain Function Network Based on Attribute and Structural Information and Its Application in Brain Diseases. 79
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