{"id":"https://openalex.org/W2162361870","doi":"https://doi.org/10.1093/bioinformatics/btr632","title":"NoRSE: noise reduction and state evaluator for high-frequency single event traces","display_name":"NoRSE: noise reduction and state evaluator for high-frequency single event traces","publication_year":2011,"publication_date":"2011-11-15","ids":{"openalex":"https://openalex.org/W2162361870","doi":"https://doi.org/10.1093/bioinformatics/btr632","mag":"2162361870","pmid":"https://pubmed.ncbi.nlm.nih.gov/22088841"},"language":"en","primary_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr632","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/2/296/48870203/bioinformatics_28_2_296.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true},"type":"article","type_crossref":"journal-article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/2/296/48870203/bioinformatics_28_2_296.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085604733","display_name":"Nigel F. Reuel","orcid":"https://orcid.org/0000-0003-3438-2919"},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["KR","US"],"is_corresponding":false,"raw_author_name":"Nigel F. Reuel","raw_affiliation_strings":["1 Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA and 2Department of Chemical Engineering, Hanyang University, Ansan 426-791, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"1 Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA and 2Department of Chemical Engineering, Hanyang University, Ansan 426-791, Republic of Korea","institution_ids":["https://openalex.org/I4575257","https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056596243","display_name":"Peter Bojo","orcid":"https://orcid.org/0000-0001-6820-4825"},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["KR","US"],"is_corresponding":false,"raw_author_name":"Peter Bojo","raw_affiliation_strings":["1 Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA and 2Department of Chemical Engineering, Hanyang University, Ansan 426-791, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"1 Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA and 2Department of Chemical Engineering, Hanyang University, Ansan 426-791, Republic of Korea","institution_ids":["https://openalex.org/I4575257","https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046409585","display_name":"Jingqing Zhang","orcid":"https://orcid.org/0000-0002-3291-0995"},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["KR","US"],"is_corresponding":false,"raw_author_name":"Jingqing Zhang","raw_affiliation_strings":["1 Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA and 2Department of Chemical Engineering, Hanyang University, Ansan 426-791, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"1 Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA and 2Department of Chemical Engineering, Hanyang University, Ansan 426-791, Republic of Korea","institution_ids":["https://openalex.org/I4575257","https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047276172","display_name":"Ardemis A. Boghossian","orcid":"https://orcid.org/0000-0001-6155-3985"},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["KR","US"],"is_corresponding":false,"raw_author_name":"Ardemis A. Boghossian","raw_affiliation_strings":["1 Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA and 2Department of Chemical Engineering, Hanyang University, Ansan 426-791, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"1 Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA and 2Department of Chemical Engineering, Hanyang University, Ansan 426-791, Republic of Korea","institution_ids":["https://openalex.org/I4575257","https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058197414","display_name":"Jin\u2010Ho Ahn","orcid":"https://orcid.org/0000-0002-1903-0248"},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["KR","US"],"is_corresponding":false,"raw_author_name":"Jin-Ho Ahn","raw_affiliation_strings":["1 Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA and 2Department of Chemical Engineering, Hanyang University, Ansan 426-791, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"1 Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA and 2Department of Chemical Engineering, Hanyang University, Ansan 426-791, Republic of Korea","institution_ids":["https://openalex.org/I4575257","https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043638062","display_name":"Jong\u2212Ho Kim","orcid":null},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["KR","US"],"is_corresponding":false,"raw_author_name":"Jong\u2212Ho Kim","raw_affiliation_strings":["1 Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA and 2Department of Chemical Engineering, Hanyang University, Ansan 426-791, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"1 Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA and 2Department of Chemical Engineering, Hanyang University, Ansan 426-791, Republic of Korea","institution_ids":["https://openalex.org/I4575257","https://openalex.org/I63966007"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041330438","display_name":"Michael S. Strano","orcid":"https://orcid.org/0000-0003-2944-808X"},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["KR","US"],"is_corresponding":true,"raw_author_name":"Michael S. Strano","raw_affiliation_strings":["1 Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA and 2Department of Chemical Engineering, Hanyang University, Ansan 426-791, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"1 Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA and 2Department of Chemical Engineering, Hanyang University, Ansan 426-791, Republic of Korea","institution_ids":["https://openalex.org/I4575257","https://openalex.org/I63966007"]}]}],"institution_assertions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5041330438"],"corresponding_institution_ids":["https://openalex.org/I4575257","https://openalex.org/I63966007"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618,"provenance":"doaj"},"apc_paid":null,"fwci":0.0,"has_fulltext":true,"fulltext_origin":"pdf","cited_by_count":14,"citation_normalized_percentile":{"value":0.837622,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":87,"max":88},"biblio":{"volume":"28","issue":"2","first_page":"296","last_page":"297"},"is_retracted":false,"is_paratext":false,"primary_topic":{"id":"https://openalex.org/T11005","display_name":"Fault Tolerance in Electronic Systems","score":0.9981,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11005","display_name":"Fault Tolerance in Electronic Systems","score":0.9981,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10074","display_name":"Carbon Nanotubes and their Applications","score":0.9976,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10363","display_name":"Low-Power VLSI Circuit Design and Optimization","score":0.9895,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/flagging","display_name":"Flagging","score":0.5900689},{"id":"https://openalex.org/keywords/trace","display_name":"TRACE (psycholinguistics)","score":0.53176033},{"id":"https://openalex.org/keywords/statistical-timing-analysis","display_name":"Statistical Timing Analysis","score":0.500802}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7062852},{"id":"https://openalex.org/C111335779","wikidata":"https://www.wikidata.org/wiki/Q3454686","display_name":"Reduction (mathematics)","level":2,"score":0.6099798},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.6060404},{"id":"https://openalex.org/C2777548347","wikidata":"https://www.wikidata.org/wiki/Q5456937","display_name":"Flagging","level":2,"score":0.5900689},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.56406164},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.53724766},{"id":"https://openalex.org/C75291252","wikidata":"https://www.wikidata.org/wiki/Q1315756","display_name":"TRACE (psycholinguistics)","level":2,"score":0.53176033},{"id":"https://openalex.org/C163294075","wikidata":"https://www.wikidata.org/wiki/Q581861","display_name":"Noise reduction","level":2,"score":0.5055239},{"id":"https://openalex.org/C2780365114","wikidata":"https://www.wikidata.org/wiki/Q169478","display_name":"MATLAB","level":2,"score":0.48841494},{"id":"https://openalex.org/C48103436","wikidata":"https://www.wikidata.org/wiki/Q599031","display_name":"State (computer science)","level":2,"score":0.4231633},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40372917},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16481057},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1535612},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07979691},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":"","qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015374","descriptor_name":"Biosensing Techniques","qualifier_ui":"","qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D036103","descriptor_name":"Nanotechnology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D036103","descriptor_name":"Nanotechnology","qualifier_ui":"","qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D037742","descriptor_name":"Nanotubes, Carbon","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D037742","descriptor_name":"Nanotubes, Carbon","qualifier_ui":"","qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr632","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/2/296/48870203/bioinformatics_28_2_296.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22088841","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":["National Institutes of Health"],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false}],"best_oa_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr632","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/2/296/48870203/bioinformatics_28_2_296.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311647","https://openalex.org/P4310311648"],"host_organization_lineage_names":["University of Oxford","Oxford University Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true},"sustainable_development_goals":[],"grants":[],"datasets":[],"versions":[],"referenced_works_count":6,"referenced_works":["https://openalex.org/W1965151798","https://openalex.org/W2027209208","https://openalex.org/W2027311423","https://openalex.org/W2040563603","https://openalex.org/W2092301242","https://openalex.org/W2124875473"],"related_works":["https://openalex.org/W629652118","https://openalex.org/W4316012730","https://openalex.org/W3156260480","https://openalex.org/W3036271325","https://openalex.org/W2357967280","https://openalex.org/W2231820892","https://openalex.org/W2183597019","https://openalex.org/W2080431051","https://openalex.org/W2052466137","https://openalex.org/W1608555937"],"abstract_inverted_index":{"NoRSE":[0,51,129],"was":[1],"developed":[2],"to":[3,41,68,104,114],"analyze":[4],"high-frequency":[5],"datasets":[6,28],"collected":[7],"from":[8,81],"multistate,":[9],"dynamic":[10,34],"experiments,":[11],"such":[12],"as":[13,132],"molecular":[14],"adsorption":[15],"and":[16,53,61,84,88,111,119],"desorption":[17],"onto":[18],"carbon":[19],"nanotubes.":[20],"As":[21],"technology":[22],"improves":[23],"sampling":[24],"frequency,":[25],"these":[26],"stochastic":[27,98],"become":[29],"increasingly":[30],"large":[31],"with":[32,93],"faster":[33,118],"events.":[35],"More":[36],"efficient":[37],"algorithms":[38],"are":[39,90],"needed":[40],"accurately":[42],"locate":[43],"the":[44,125],"unique":[45,71],"states":[46],"in":[47],"each":[48],"time":[49],"trace.":[50],"adapts":[52],"optimizes":[54],"a":[55,63,94],"previously":[56],"published":[57,107],"noise":[58],"reduction":[59],"algorithm":[60,75,101,110],"uses":[62],"custom":[64],"peak":[65],"flagging":[66],"routine":[67],"rapidly":[69],"identify":[70],"event":[72],"states.":[73],"The":[74,100],"is":[76,102,112,130],"explained":[77],"using":[78],"experimental":[79,127],"data":[80],"our":[82],"lab":[83],"its":[85],"fitting":[86],"accuracy":[87],"efficiency":[89],"then":[91],"shown":[92],"generalized":[95,126],"model":[96],"of":[97,124],"datasets.":[99],"compared":[103],"another":[105],"recently":[106],"state":[108],"finding":[109],"found":[113],"be":[115],"27":[116],"times":[117],"more":[120],"accurate":[121],"over":[122],"55%":[123],"space.":[128],"written":[131],"an":[133],"M-file":[134],"for":[135],"Matlab.http://web.mit.edu/stranogroup/NoRSE.txt.":[136]},"cited_by_api_url":"https://api.openalex.org/works?filter=cites:W2162361870","counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1}],"updated_date":"2024-11-18T01:39:53.853839","created_date":"2016-06-24"}