{"id":"https://openalex.org/W1576273202","doi":"https://doi.org/10.1007/978-3-540-25929-9_99","title":"Extracting Protein-Protein Interaction Sentences by Applying Rough Set Data Analysis","display_name":"Extracting Protein-Protein Interaction Sentences by Applying Rough Set Data Analysis","publication_year":2004,"publication_date":"2004-01-01","ids":{"openalex":"https://openalex.org/W1576273202","doi":"https://doi.org/10.1007/978-3-540-25929-9_99","mag":"1576273202"},"language":"en","primary_location":{"is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-25929-9_99","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319965","https://openalex.org/P4310319900"],"host_organization_lineage_names":["Springer Nature","Springer Science+Business Media"],"type":"book series"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false},"type":"book-chapter","type_crossref":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019929457","display_name":"Filip Ginter","orcid":"https://orcid.org/0000-0002-5484-6103"},"institutions":[{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]},{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Filip Ginter","raw_affiliation_strings":["Turku Centre for Computer Science (TUCS)","Univ. of Turku"],"affiliations":[{"raw_affiliation_string":"Turku Centre for Computer Science (TUCS)","institution_ids":["https://openalex.org/I183173800"]},{"raw_affiliation_string":"Univ. of Turku","institution_ids":["https://openalex.org/I155660961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021993986","display_name":"Tapio Pahikkala","orcid":"https://orcid.org/0000-0003-4183-2455"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Tapio Pahikkala","raw_affiliation_strings":["Turku Centre for Computer Science (TUCS)","Univ. of Turku"],"affiliations":[{"raw_affiliation_string":"Univ. of Turku","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"Turku Centre for Computer Science (TUCS)","institution_ids":["https://openalex.org/I183173800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066925770","display_name":"Sampo Pyysalo","orcid":"https://orcid.org/0000-0002-6279-5000"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Sampo Pyysalo","raw_affiliation_strings":["Turku Centre for Computer Science (TUCS)","Univ. of Turku"],"affiliations":[{"raw_affiliation_string":"Univ. of Turku","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"Turku Centre for Computer Science (TUCS)","institution_ids":["https://openalex.org/I183173800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039033935","display_name":"Jorma Boberg","orcid":null},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Jorma Boberg","raw_affiliation_strings":["Turku Centre for Computer Science (TUCS)","Univ. of Turku"],"affiliations":[{"raw_affiliation_string":"Univ. of Turku","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"Turku Centre for Computer Science (TUCS)","institution_ids":["https://openalex.org/I183173800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091139212","display_name":"Jouni J\u00e4rvinen","orcid":"https://orcid.org/0000-0002-8729-8633"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Jouni J\u00e4rvinen","raw_affiliation_strings":["Turku Centre for Computer Science (TUCS)","Univ. of Turku"],"affiliations":[{"raw_affiliation_string":"Univ. of Turku","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"Turku Centre for Computer Science (TUCS)","institution_ids":["https://openalex.org/I183173800"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5105839982","display_name":"Tapio Salakoski","orcid":null},"institutions":[{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]},{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Tapio Salakoski","raw_affiliation_strings":["Turku Centre for Computer Science (TUCS)","Univ. of Turku"],"affiliations":[{"raw_affiliation_string":"Turku Centre for Computer Science (TUCS)","institution_ids":["https://openalex.org/I183173800"]},{"raw_affiliation_string":"Univ. of Turku","institution_ids":["https://openalex.org/I155660961"]}]}],"institution_assertions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392,"provenance":"doaj"},"apc_paid":null,"fwci":2.463,"has_fulltext":true,"fulltext_origin":"ngrams","cited_by_count":13,"citation_normalized_percentile":{"value":0.931301,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":83,"max":84},"biblio":{"volume":null,"issue":null,"first_page":"780","last_page":"785"},"is_retracted":false,"is_paratext":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Ontologies and Text Mining","score":0.9997,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Ontologies and Text Mining","score":0.9997,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Statistical Machine Translation and Natural Language Processing","score":0.989,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11063","display_name":"Rough Sets Theory and Applications","score":0.9869,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/probabilistic-rough-sets","display_name":"Probabilistic Rough Sets","score":0.55792},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural Language Processing","score":0.547772},{"id":"https://openalex.org/keywords/language-modeling","display_name":"Language Modeling","score":0.540063},{"id":"https://openalex.org/keywords/part-of-speech-tagging","display_name":"Part-of-Speech Tagging","score":0.516492},{"id":"https://openalex.org/keywords/rough-sets","display_name":"Rough Sets","score":0.51639},{"id":"https://openalex.org/keywords/spelling","display_name":"Spelling","score":0.45204926},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.42865306}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.82673776},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5972847},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.57969713},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5692501},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.56260556},{"id":"https://openalex.org/C2777801307","wikidata":"https://www.wikidata.org/wiki/Q2088390","display_name":"Spelling","level":2,"score":0.45204926},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.42865306},{"id":"https://openalex.org/C100660578","wikidata":"https://www.wikidata.org/wiki/Q18733","display_name":"Recall","level":2,"score":0.41920787},{"id":"https://openalex.org/C111012933","wikidata":"https://www.wikidata.org/wiki/Q3137210","display_name":"Rough set","level":2,"score":0.4141376},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.13192376},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-25929-9_99","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319965","https://openalex.org/P4310319900"],"host_organization_lineage_names":["Springer Nature","Springer Science+Business Media"],"type":"book series"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Peace, justice, and strong institutions","id":"https://metadata.un.org/sdg/16","score":0.8}],"grants":[],"datasets":[],"versions":[],"referenced_works_count":9,"referenced_works":["https://openalex.org/W1496832333","https://openalex.org/W1973805286","https://openalex.org/W2040745298","https://openalex.org/W2088544660","https://openalex.org/W2120433106","https://openalex.org/W2123280311","https://openalex.org/W2155320925","https://openalex.org/W2166474856","https://openalex.org/W64527363"],"related_works":["https://openalex.org/W611030372","https://openalex.org/W4367460280","https://openalex.org/W4298186509","https://openalex.org/W2556702969","https://openalex.org/W2358294942","https://openalex.org/W217221262","https://openalex.org/W2161008081","https://openalex.org/W2100947578","https://openalex.org/W1974418053","https://openalex.org/W1555832326"],"abstract_inverted_index":{"In":[0,41],"this":[1],"paper,":[2],"we":[3,51],"introduce":[4],"a":[5,53,75,83],"way":[6],"to":[7,13,43],"apply":[8],"rough":[9],"set":[10,46],"data":[11],"analysis":[12],"the":[14,45,63,68,71],"problem":[15],"of":[16,30,47,62,70,78,87],"extracting":[17],"protein-protein":[18],"interaction":[19,33,49,64],"sentences":[20,80],"in":[21,39],"biomedical":[22],"literature.":[23],"Our":[24],"approach":[25],"builds":[26],"on":[27,74],"decision":[28],"rules":[29],"protein":[31],"names,":[32],"words,":[34,50],"and":[35,59,81],"their":[36],"mutual":[37],"positions":[38],"sentences.":[40],"order":[42],"broaden":[44],"potential":[48],"develop":[52],"morphological":[54],"model":[55],"which":[56],"generates":[57],"spelling":[58],"inflection":[60],"variants":[61],"words.":[65],"We":[66],"evaluate":[67],"performance":[69,86],"proposed":[72],"method":[73],"hand-tagged":[76],"dataset":[77],"1894":[79],"show":[82],"precision-recall":[84],"break-even":[85],"79,8%":[88],"by":[89],"using":[90],"leave-one-out":[91],"crossvalidation.":[92]},"cited_by_api_url":"https://api.openalex.org/works?filter=cites:W1576273202","counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2}],"updated_date":"2024-09-19T12:39:06.511422","created_date":"2016-06-24"}
