iBet uBet
web content aggregator. Adding the entire web to your favor.
Link to original content:
https://api.crossref.org/works/10.1186/S12918-014-0121-3
{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,8,27]],"date-time":"2024-08-27T05:07:23Z","timestamp":1724735243031},"reference-count":99,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2014,10,25]],"date-time":"2014-10-25T00:00:00Z","timestamp":1414195200000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Syst Biol"],"published-print":{"date-parts":[[2014,12]]},"DOI":"10.1186\/s12918-014-0121-3","type":"journal-article","created":{"date-parts":[[2014,10,24]],"date-time":"2014-10-24T16:09:26Z","timestamp":1414166966000},"update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":40,"title":["Understanding disease mechanisms with models of signaling pathway activities"],"prefix":"10.1186","volume":"8","author":[{"given":"Patricia","family":"Sebastian-Leon","sequence":"first","affiliation":[]},{"given":"Enrique","family":"Vidal","sequence":"additional","affiliation":[]},{"given":"Pablo","family":"Minguez","sequence":"additional","affiliation":[]},{"given":"Ana","family":"Conesa","sequence":"additional","affiliation":[]},{"given":"Sonia","family":"Tarazona","sequence":"additional","affiliation":[]},{"given":"Alicia","family":"Amadoz","sequence":"additional","affiliation":[]},{"given":"Carmen","family":"Armero","sequence":"additional","affiliation":[]},{"given":"Francisco","family":"Salavert","sequence":"additional","affiliation":[]},{"given":"Antonio","family":"Vidal-Puig","sequence":"additional","affiliation":[]},{"given":"David","family":"Montaner","sequence":"additional","affiliation":[]},{"given":"Joaqu\u00edn","family":"Dopazo","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2014,10,25]]},"reference":[{"issue":"6","key":"121_CR1","doi-asserted-by":"publisher","first-page":"489","DOI":"10.1056\/NEJMp1114866","volume":"366","author":"R Mirnezami","year":"2012","unstructured":"Mirnezami R, Nicholson J, Darzi A: Preparing for precision medicine. N Engl J Med. 2012, 366 (6): 489-491. 10.1056\/NEJMp1114866.","journal-title":"N Engl J Med"},{"issue":"1","key":"121_CR2","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1093\/nar\/gkn923","volume":"37","author":"W da Huang","year":"2009","unstructured":"da Huang W, Sherman BT, Lempicki RA: Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 2009, 37 (1): 1-13. 10.1093\/nar\/gkn923.","journal-title":"Nucleic Acids Res"},{"issue":"4","key":"121_CR3","doi-asserted-by":"publisher","first-page":"578","DOI":"10.1093\/bioinformatics\/btg455","volume":"20","author":"F Al-Shahrour","year":"2004","unstructured":"Al-Shahrour F, Diaz-Uriarte R, Dopazo J: FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes. Bioinformatics. 2004, 20 (4): 578-580. 10.1093\/bioinformatics\/btg455.","journal-title":"Bioinformatics"},{"issue":"1","key":"121_CR4","doi-asserted-by":"publisher","first-page":"R7","DOI":"10.1186\/gb-2003-4-1-r7","volume":"4","author":"SW Doniger","year":"2003","unstructured":"Doniger SW, Salomonis N, Dahlquist KD, Vranizan K, Lawlor SC, Conklin BR: MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data. Genome Biol. 2003, 4 (1): R7-10.1186\/gb-2003-4-1-r7.","journal-title":"Genome Biol"},{"issue":"5","key":"121_CR5","doi-asserted-by":"publisher","first-page":"3","DOI":"10.1186\/gb-2003-4-5-p3","volume":"4","author":"G Dennis Jr","year":"2003","unstructured":"Dennis G, Sherman BT, Hosack DA, Yang J, Gao W, Lane HC, Lempicki RA: DAVID: database for annotation, visualization, and integrated discovery. Genome Biol. 2003, 4 (5): 3-10.1186\/gb-2003-4-5-p3.","journal-title":"Genome Biol"},{"issue":"Web Server issu","key":"121_CR6","doi-asserted-by":"publisher","first-page":"W449","DOI":"10.1093\/nar\/gkh409","volume":"32","author":"P Khatri","year":"2004","unstructured":"Khatri P, Bhavsar P, Bawa G, Draghici S: Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments. Nucleic Acids Res. 2004, 32 (Web Server issue): W449-W456. 10.1093\/nar\/gkh409.","journal-title":"Nucleic Acids Res"},{"issue":"4","key":"121_CR7","doi-asserted-by":"publisher","first-page":"R28","DOI":"10.1186\/gb-2003-4-4-r28","volume":"4","author":"BR Zeeberg","year":"2003","unstructured":"Zeeberg BR, Feng W, Wang G, Wang MD, Fojo AT, Sunshine M, Narasimhan S, Kane DW, Reinhold WC, Lababidi S, Bussey KJ, Riss J, Barrett JC, Weinstein JN: GoMiner: a resource for biological interpretation of genomic and proteomic data. Genome Biol. 2003, 4 (4): R28-10.1186\/gb-2003-4-4-r28.","journal-title":"Genome Biol"},{"issue":"18","key":"121_CR8","doi-asserted-by":"publisher","first-page":"3587","DOI":"10.1093\/bioinformatics\/bti565","volume":"21","author":"P Khatri","year":"2005","unstructured":"Khatri P, Draghici S: Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinformatics. 2005, 21 (18): 3587-3595. 10.1093\/bioinformatics\/bti565.","journal-title":"Bioinformatics"},{"issue":"1","key":"121_CR9","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1038\/75556","volume":"25","author":"M Ashburner","year":"2000","unstructured":"Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G: Gene ontology: tool for the unification of biology: the gene ontology consortium. Nat Genet. 2000, 25 (1): 25-29. 10.1038\/75556.","journal-title":"Nat Genet"},{"issue":"Database issue","key":"121_CR10","doi-asserted-by":"publisher","first-page":"D109","DOI":"10.1093\/nar\/gkr988","volume":"40","author":"M Kanehisa","year":"2012","unstructured":"Kanehisa M, Goto S, Sato Y, Furumichi M, Tanabe M: KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res. 2012, 40 (Database issue): D109-D114. 10.1093\/nar\/gkr988.","journal-title":"Nucleic Acids Res"},{"issue":"3","key":"121_CR11","doi-asserted-by":"publisher","first-page":"267","DOI":"10.1038\/ng1180","volume":"34","author":"VK Mootha","year":"2003","unstructured":"Mootha VK, Lindgren CM, Eriksson KF, Subramanian A, Sihag S, Lehar J, Puigserver P, Carlsson E, Ridderstrale M, Laurila E, Houstis N, Daly MJ, Patterson N, Mesirov JP, Golub TR, Tamayo P, Spiegelman B, Lander ES, Hirschhorn JN, Altshuler D, Groop LC: PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes. Nat Genet. 2003, 34 (3): 267-273. 10.1038\/ng1180.","journal-title":"Nat Genet"},{"issue":"8","key":"121_CR12","doi-asserted-by":"publisher","first-page":"980","DOI":"10.1093\/bioinformatics\/btm051","volume":"23","author":"JJ Goeman","year":"2007","unstructured":"Goeman JJ, Buhlmann P: Analyzing gene expression data in terms of gene sets: methodological issues. Bioinformatics. 2007, 23 (8): 980-987. 10.1093\/bioinformatics\/btm051.","journal-title":"Bioinformatics"},{"issue":"2\u20133","key":"121_CR13","doi-asserted-by":"publisher","first-page":"97","DOI":"10.1016\/j.artmed.2008.08.003","volume":"45","author":"J Dopazo","year":"2009","unstructured":"Dopazo J: Formulating and testing hypotheses in functional genomics. Artif Intell Med. 2009, 45 (2\u20133): 97-107. 10.1016\/j.artmed.2008.08.003.","journal-title":"Artif Intell Med"},{"issue":"3","key":"121_CR14","doi-asserted-by":"publisher","first-page":"189","DOI":"10.1093\/bib\/bbn001","volume":"9","author":"D Nam","year":"2008","unstructured":"Nam D, Kim SY: Gene-set approach for expression pattern analysis. Brief Bioinform. 2008, 9 (3): 189-197. 10.1093\/bib\/bbn001.","journal-title":"Brief Bioinform"},{"key":"121_CR15","doi-asserted-by":"publisher","first-page":"114","DOI":"10.1186\/1471-2105-8-114","volume":"8","author":"F Al-Shahrour","year":"2007","unstructured":"Al-Shahrour F, Arbiza L, Dopazo H, Huerta-Cepas J, Minguez P, Montaner D, Dopazo J: From genes to functional classes in the study of biological systems. BMC Bioinformatics. 2007, 8: 114-10.1186\/1471-2105-8-114.","journal-title":"BMC Bioinformatics"},{"issue":"11","key":"121_CR16","doi-asserted-by":"publisher","first-page":"e79217","DOI":"10.1371\/journal.pone.0079217","volume":"8","author":"AL Tarca","year":"2013","unstructured":"Tarca AL, Bhatti G, Romero R: A comparison of gene set analysis methods in terms of sensitivity, prioritization and specificity. PLoS One. 2013, 8 (11): e79217-10.1371\/journal.pone.0079217.","journal-title":"PLoS One"},{"key":"121_CR17","doi-asserted-by":"publisher","first-page":"197","DOI":"10.1186\/1471-2164-10-197","volume":"10","author":"D Montaner","year":"2009","unstructured":"Montaner D, Minguez P, Al-Shahrour F, Dopazo J: Gene set internal coherence in the context of functional profiling. BMC Genomics. 2009, 10: 197-10.1186\/1471-2164-10-197.","journal-title":"BMC Genomics"},{"issue":"3","key":"121_CR18","doi-asserted-by":"publisher","first-page":"R39","DOI":"10.1186\/gb-2007-8-3-r39","volume":"8","author":"I Vastrik","year":"2007","unstructured":"Vastrik I, D'Eustachio P, Schmidt E, Joshi-Tope G, Gopinath G, Croft D, de Bono B, Gillespie M, Jassal B, Lewis S, Matthews L, Wu G, Birney E, Stein L: Reactome: a knowledge base of biologic pathways and processes. Genome Biol. 2007, 8 (3): R39-10.1186\/gb-2007-8-3-r39.","journal-title":"Genome Biol"},{"issue":"7","key":"121_CR19","doi-asserted-by":"publisher","first-page":"64","DOI":"10.1186\/gm468","volume":"5","author":"MJ Davis","year":"2013","unstructured":"Davis MJ, Ragan MA: Understanding cellular function and disease with comparative pathway analysis. Genome Med. 2013, 5 (7): 64-10.1186\/gm468.","journal-title":"Genome Med"},{"issue":"2","key":"121_CR20","doi-asserted-by":"publisher","first-page":"e1002375","DOI":"10.1371\/journal.pcbi.1002375","volume":"8","author":"P Khatri","year":"2012","unstructured":"Khatri P, Sirota M, Butte AJ: Ten years of pathway analysis: current approaches and outstanding challenges. PLoS Comput Biol. 2012, 8 (2): e1002375-10.1371\/journal.pcbi.1002375.","journal-title":"PLoS Comput Biol"},{"key":"121_CR21","doi-asserted-by":"crossref","first-page":"Article16","DOI":"10.2202\/1544-6115.1055","volume":"3","author":"J Rahnenfuhrer","year":"2004","unstructured":"Rahnenfuhrer J, Domingues FS, Maydt J, Lengauer T: Calculating the statistical significance of changes in pathway activity from gene expression data. Stat Appl Genet Mol Biol. 2004, 3: Article16-","journal-title":"Stat Appl Genet Mol Biol"},{"issue":"10","key":"121_CR22","doi-asserted-by":"publisher","first-page":"1537","DOI":"10.1101\/gr.6202607","volume":"17","author":"S Draghici","year":"2007","unstructured":"Draghici S, Khatri P, Tarca AL, Amin K, Done A, Voichita C, Georgescu C, Romero R: A systems biology approach for pathway level analysis. Genome Res. 2007, 17 (10): 1537-1545. 10.1101\/gr.6202607.","journal-title":"Genome Res"},{"issue":"1","key":"121_CR23","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1093\/bioinformatics\/btn577","volume":"25","author":"AL Tarca","year":"2009","unstructured":"Tarca AL, Draghici S, Khatri P, Hassan SS, Mittal P, Kim JS, Kim CJ, Kusanovic JP, Romero R: A novel signaling pathway impact analysis. Bioinformatics. 2009, 25 (1): 75-82. 10.1093\/bioinformatics\/btn577.","journal-title":"Bioinformatics"},{"issue":"3","key":"121_CR24","doi-asserted-by":"publisher","first-page":"407","DOI":"10.1089\/cmb.2008.0081","volume":"16","author":"A Shojaie","year":"2009","unstructured":"Shojaie A, Michailidis G: Analysis of gene sets based on the underlying regulatory network. J Comput Biol. 2009, 16 (3): 407-426. 10.1089\/cmb.2008.0081.","journal-title":"J Comput Biol"},{"issue":"1","key":"121_CR25","doi-asserted-by":"publisher","first-page":"65","DOI":"10.1186\/1752-0509-6-65","volume":"6","author":"Y Liu","year":"2012","unstructured":"Liu Y, Koyuturk M, Barnholtz-Sloan JS, Chance MR: Gene interaction enrichment and network analysis to identify dysregulated pathways and their interactions in complex diseases. BMC Syst Biol. 2012, 6 (1): 65-10.1186\/1752-0509-6-65.","journal-title":"BMC Syst Biol"},{"issue":"5","key":"121_CR26","doi-asserted-by":"publisher","first-page":"e425","DOI":"10.1371\/journal.pone.0000425","volume":"2","author":"S Efroni","year":"2007","unstructured":"Efroni S, Schaefer CF, Buetow KH: Identification of key processes underlying cancer phenotypes using biologic pathway analysis. PLoS One. 2007, 2 (5): e425-10.1371\/journal.pone.0000425.","journal-title":"PLoS One"},{"issue":"11","key":"121_CR27","doi-asserted-by":"publisher","first-page":"e1000217","DOI":"10.1371\/journal.pcbi.1000217","volume":"4","author":"E Lee","year":"2008","unstructured":"Lee E, Chuang HY, Kim JW, Ideker T, Lee D: Inferring pathway activity toward precise disease classification. PLoS Comput Biol. 2008, 4 (11): e1000217-10.1371\/journal.pcbi.1000217.","journal-title":"PLoS Comput Biol"},{"issue":"1","key":"121_CR28","doi-asserted-by":"publisher","first-page":"e19","DOI":"10.1093\/nar\/gks866","volume":"41","author":"P Martini","year":"2013","unstructured":"Martini P, Sales G, Massa MS, Chiogna M, Romualdi C: Along signal paths: an empirical gene set approach exploiting pathway topology. Nucleic Acids Res. 2013, 41 (1): e19-10.1093\/nar\/gks866.","journal-title":"Nucleic Acids Res"},{"issue":"3","key":"121_CR29","doi-asserted-by":"publisher","first-page":"e1002967","DOI":"10.1371\/journal.pcbi.1002967","volume":"9","author":"WA Haynes","year":"2013","unstructured":"Haynes WA, Higdon R, Stanberry L, Collins D, Kolker E: Differential expression analysis for pathways. PLoS Comput Biol. 2013, 9 (3): e1002967-10.1371\/journal.pcbi.1002967.","journal-title":"PLoS Comput Biol"},{"issue":"4","key":"121_CR30","doi-asserted-by":"publisher","first-page":"e31685","DOI":"10.1371\/journal.pone.0031685","volume":"7","author":"S Nam","year":"2012","unstructured":"Nam S, Park T: Pathway-based evaluation in early onset colorectal cancer suggests focal adhesion and immunosuppression along with epithelial-mesenchymal transition. PLoS One. 2012, 7 (4): e31685-10.1371\/journal.pone.0031685.","journal-title":"PLoS One"},{"issue":"2","key":"121_CR31","doi-asserted-by":"publisher","first-page":"561","DOI":"10.1214\/11-AOAS528","volume":"6","author":"L Jacob","year":"2012","unstructured":"Jacob L, Neuvial P, Dudoit S: More power via graph-structured tests for differential expression of gene networks. Ann Appl Stat. 2012, 6 (2): 561-600. 10.1214\/11-AOAS528.","journal-title":"Ann Appl Stat"},{"issue":"5","key":"121_CR32","doi-asserted-by":"publisher","first-page":"649","DOI":"10.1093\/bioinformatics\/btq714","volume":"27","author":"X Chen","year":"2011","unstructured":"Chen X, Xu J, Huang B, Li J, Wu X, Ma L, Jia X, Bian X, Tan F, Liu L, Chen S, Li X: A sub-pathway-based approach for identifying drug response principal network. Bioinformatics. 2011, 27 (5): 649-654. 10.1093\/bioinformatics\/btq714.","journal-title":"Bioinformatics"},{"issue":"5","key":"121_CR33","doi-asserted-by":"publisher","first-page":"563","DOI":"10.1089\/cmb.2011.0182","volume":"19","author":"MA Ibrahim","year":"2012","unstructured":"Ibrahim MA, Jassim S, Cawthorne MA, Langlands K: A topology-based score for pathway enrichment. J Comput Biol. 2012, 19 (5): 563-573. 10.1089\/cmb.2011.0182.","journal-title":"J Comput Biol"},{"issue":"7","key":"121_CR34","doi-asserted-by":"publisher","first-page":"961","DOI":"10.1089\/cmb.2007.0041","volume":"14","author":"F Emmert-Streib","year":"2007","unstructured":"Emmert-Streib F: The chronic fatigue syndrome: a comparative pathway analysis. J Comput Biol. 2007, 14 (7): 961-972. 10.1089\/cmb.2007.0041.","journal-title":"J Comput Biol"},{"issue":"4","key":"121_CR35","doi-asserted-by":"publisher","first-page":"R44","DOI":"10.1186\/gb-2009-10-4-r44","volume":"10","author":"R Thomas","year":"2009","unstructured":"Thomas R, Gohlke JM, Stopper GF, Parham FM, Portier CJ: Choosing the right path: enhancement of biologically relevant sets of genes or proteins using pathway structure. Genome Biol. 2009, 10 (4): R44-10.1186\/gb-2009-10-4-r44.","journal-title":"Genome Biol"},{"issue":"3","key":"121_CR36","doi-asserted-by":"publisher","first-page":"1425","DOI":"10.1093\/nar\/gks1299","volume":"41","author":"T Judeh","year":"2013","unstructured":"Judeh T, Johnson C, Kumar A, Zhu D: TEAK: topology enrichment analysis framework for detecting activated biological subpathways. Nucleic Acids Res. 2013, 41 (3): 1425-1437. 10.1093\/nar\/gks1299.","journal-title":"Nucleic Acids Res"},{"key":"121_CR37","doi-asserted-by":"publisher","first-page":"331","DOI":"10.1038\/msb.2009.87","volume":"5","author":"J Saez-Rodriguez","year":"2009","unstructured":"Saez-Rodriguez J, Alexopoulos LG, Epperlein J, Samaga R, Lauffenburger DA, Klamt S, Sorger PK: Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction. Mol Syst Biol. 2009, 5: 331-10.1038\/msb.2009.87.","journal-title":"Mol Syst Biol"},{"issue":"8","key":"121_CR38","doi-asserted-by":"publisher","first-page":"e1000438","DOI":"10.1371\/journal.pcbi.1000438","volume":"5","author":"R Samaga","year":"2009","unstructured":"Samaga R, Saez-Rodriguez J, Alexopoulos LG, Sorger PK, Klamt S: The logic of EGFR\/ErbB signaling: theoretical properties and analysis of high-throughput data. PLoS Comput Biol. 2009, 5 (8): e1000438-10.1371\/journal.pcbi.1000438.","journal-title":"PLoS Comput Biol"},{"issue":"3","key":"121_CR39","doi-asserted-by":"publisher","first-page":"463","DOI":"10.1016\/j.jtbi.2006.08.014","volume":"244","author":"S Gupta","year":"2007","unstructured":"Gupta S, Bisht SS, Kukreti R, Jain S, Brahmachari SK: Boolean network analysis of a neurotransmitter signaling pathway. J Theor Biol. 2007, 244 (3): 463-469. 10.1016\/j.jtbi.2006.08.014.","journal-title":"J Theor Biol"},{"issue":"42","key":"121_CR40","doi-asserted-by":"publisher","first-page":"16308","DOI":"10.1073\/pnas.0806447105","volume":"105","author":"R Zhang","year":"2008","unstructured":"Zhang R, Shah MV, Yang J, Nyland SB, Liu X, Yun JK, Albert R, Loughran TP: Network model of survival signaling in large granular lymphocyte leukemia. Proc Natl Acad Sci U S A. 2008, 105 (42): 16308-16313. 10.1073\/pnas.0806447105.","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"6","key":"121_CR41","doi-asserted-by":"publisher","first-page":"1913","DOI":"10.1073\/pnas.0705088105","volume":"105","author":"T Helikar","year":"2008","unstructured":"Helikar T, Konvalina J, Heidel J, Rogers JA: Emergent decision-making in biological signal transduction networks. Proc Natl Acad Sci U S A. 2008, 105 (6): 1913-1918. 10.1073\/pnas.0705088105.","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"3","key":"121_CR42","doi-asserted-by":"publisher","first-page":"355","DOI":"10.1016\/j.taap.2009.07.013","volume":"240","author":"BC Spink","year":"2009","unstructured":"Spink BC, Bennett JA, Pentecost BT, Lostritto N, Englert NA, Benn GK, Goodenough AK, Turesky RJ, Spink DC: Long-term estrogen exposure promotes carcinogen bioactivation, induces persistent changes in gene expression, and enhances the tumorigenicity of MCF-7 human breast cancer cells. Toxicol Appl Pharmacol. 2009, 240 (3): 355-366. 10.1016\/j.taap.2009.07.013.","journal-title":"Toxicol Appl Pharmacol"},{"issue":"2","key":"121_CR43","doi-asserted-by":"publisher","first-page":"221","DOI":"10.3324\/haematol.2010.029660","volume":"96","author":"BV Balgobind","year":"2011","unstructured":"Balgobind BV, Van den Heuvel-Eibrink MM, De Menezes RX, Reinhardt D, Hollink IH, Arentsen-Peters ST, van Wering ER, Kaspers GJ, Cloos J, De Bont ES, Cayuela JM, Baruchel A, Meyer C, Marschalek R, Trka J, Stary J, Beverloo HB, Pieters R, Zwaan CM, Den Boer ML: Evaluation of gene expression signatures predictive of cytogenetic and molecular subtypes of pediatric acute myeloid leukemia. Haematologica. 2011, 96 (2): 221-230. 10.3324\/haematol.2010.029660.","journal-title":"Haematologica"},{"key":"121_CR44","doi-asserted-by":"publisher","first-page":"61","DOI":"10.1186\/1755-8794-4-61","volume":"4","author":"HG LaBreche","year":"2011","unstructured":"LaBreche HG, Nevins JR, Huang E: Integrating factor analysis and a transgenic mouse model to reveal a peripheral blood predictor of breast tumors. BMC Med Genomics. 2011, 4: 61-10.1186\/1755-8794-4-61.","journal-title":"BMC Med Genomics"},{"issue":"1","key":"121_CR45","doi-asserted-by":"publisher","first-page":"8","DOI":"10.1002\/gcc.20500","volume":"47","author":"DL Stirewalt","year":"2008","unstructured":"Stirewalt DL, Meshinchi S, Kopecky KJ, Fan W, Pogosova-Agadjanyan EL, Engel JH, Cronk MR, Dorcy KS, McQuary AR, Hockenbery D, Wood B, Heimfeld S, Radich JP: Identification of genes with abnormal expression changes in acute myeloid leukemia. Genes Chromosomes Cancer. 2008, 47 (1): 8-20. 10.1002\/gcc.20500.","journal-title":"Genes Chromosomes Cancer"},{"key":"121_CR46","volume-title":"Statistical Learning Theory","author":"V Vapnik","year":"1999","unstructured":"Vapnik V: Statistical Learning Theory. 1999, John Wiley and Sons, New York"},{"issue":"8","key":"121_CR47","doi-asserted-by":"publisher","first-page":"827","DOI":"10.1038\/nbt.1665","volume":"28","author":"L Shi","year":"2010","unstructured":"Shi L, Campbell G, Jones WD, Campagne F, Wen Z, Walker SJ, Su Z, Chu TM, Goodsaid FM, Pusztai L, Shaughnessy JD, Oberthuer A, Thomas RS, Paules RS, Fielden M, Barlogie B, Chen W, Du P, Fischer M, Furlanello C, Gallas BD, Ge X, Megherbi DB, Symmans WF, Wang MD, Zhang J, Bitter H, Brors B, Bushel PR, Bylesjo M: The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models. Nat Biotechnol. 2010, 28 (8): 827-838. 10.1038\/nbt.1665.","journal-title":"Nat Biotechnol"},{"issue":"4","key":"121_CR48","doi-asserted-by":"publisher","first-page":"1107","DOI":"10.1158\/1078-0432.CCR-06-1633","volume":"13","author":"Y Hong","year":"2007","unstructured":"Hong Y, Ho KS, Eu KW, Cheah PY: A susceptibility gene set for early onset colorectal cancer that integrates diverse signaling pathways: implication for tumorigenesis. Clin Cancer Res. 2007, 13 (4): 1107-1114. 10.1158\/1078-0432.CCR-06-1633.","journal-title":"Clin Cancer Res"},{"issue":"3","key":"121_CR49","doi-asserted-by":"publisher","first-page":"287","DOI":"10.1593\/neo.07971","volume":"10","author":"H Xiong","year":"2008","unstructured":"Xiong H, Zhang ZG, Tian XQ, Sun DF, Liang QC, Zhang YJ, Lu R, Chen YX, Fang JY: Inhibition of JAK1, 2\/STAT3 signaling induces apoptosis, cell cycle arrest, and reduces tumor cell invasion in colorectal cancer cells. Neoplasia. 2008, 10 (3): 287-297.","journal-title":"Neoplasia"},{"issue":"16","key":"121_CR50","doi-asserted-by":"publisher","first-page":"2668","DOI":"10.1016\/j.ejca.2006.07.006","volume":"42","author":"JP Spano","year":"2006","unstructured":"Spano JP, Milano G, Rixe C, Fagard R: JAK\/STAT signalling pathway in colorectal cancer: a new biological target with therapeutic implications. Eur J Cancer. 2006, 42 (16): 2668-2670. 10.1016\/j.ejca.2006.07.006.","journal-title":"Eur J Cancer"},{"issue":"8","key":"121_CR51","doi-asserted-by":"publisher","first-page":"2103","DOI":"10.1158\/1535-7163.MCT-09-0282","volume":"8","author":"Y Wang","year":"2009","unstructured":"Wang Y: Wnt\/Planar cell polarity signaling: a new paradigm for cancer therapy. Mol Cancer Ther. 2009, 8 (8): 2103-2109. 10.1158\/1535-7163.MCT-09-0282.","journal-title":"Mol Cancer Ther"},{"issue":"Suppl 1","key":"121_CR52","doi-asserted-by":"publisher","first-page":"3","DOI":"10.1634\/theoncologist.5-suppl_1-3","volume":"5","author":"G McMahon","year":"2000","unstructured":"McMahon G: VEGF receptor signaling in tumor angiogenesis. Oncologist. 2000, 5 (Suppl 1): 3-10. 10.1634\/theoncologist.5-suppl_1-3.","journal-title":"Oncologist"},{"issue":"3","key":"121_CR53","doi-asserted-by":"crossref","first-page":"746","DOI":"10.3892\/ijo.2013.1994","volume":"43","author":"J Wang","year":"2013","unstructured":"Wang J, Ikeda R, Che XF, Ooyama A, Yamamoto M, Furukawa T, Hasui K, Zheng CL, Tajitsu Y, Oka T, Tabata S, Nishizawa Y, Eizuru Y, Akiyama S: VEGF expression is augmented by hypoxiainduced PGIS in human fibroblasts. Int J Oncol. 2013, 43 (3): 746-754.","journal-title":"Int J Oncol"},{"issue":"1","key":"121_CR54","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/s00384-003-0511-2","volume":"19","author":"M Rao","year":"2004","unstructured":"Rao M, Yang W, Seifalian AM, Winslet MC: Role of cyclooxygenase-2 in the angiogenesis of colorectal cancer. Int J Colorectal Dis. 2004, 19 (1): 1-11. 10.1007\/s00384-003-0511-2.","journal-title":"Int J Colorectal Dis"},{"issue":"9","key":"121_CR55","first-page":"2330","volume":"63","author":"R Fukuda","year":"2003","unstructured":"Fukuda R, Kelly B, Semenza GL: Vascular endothelial growth factor gene expression in colon cancer cells exposed to prostaglandin E2 is mediated by hypoxia-inducible factor 1. Cancer Res. 2003, 63 (9): 2330-2334.","journal-title":"Cancer Res"},{"issue":"3","key":"121_CR56","doi-asserted-by":"publisher","first-page":"797","DOI":"10.2337\/db10-0705","volume":"60","author":"X Prieur","year":"2011","unstructured":"Prieur X, Mok CY, Velagapudi VR, Nunez V, Fuentes L, Montaner D, Ishikawa K, Camacho A, Barbarroja N, O'Rahilly S, Sethi JK, Dopazo J, Oresic M, Ricote M, Vidal-Puig A: Differential lipid partitioning between adipocytes and tissue macrophages modulates macrophage lipotoxicity and M2\/M1 polarization in obese mice. Diabetes. 2011, 60 (3): 797-809. 10.2337\/db10-0705.","journal-title":"Diabetes"},{"issue":"2","key":"121_CR57","doi-asserted-by":"publisher","first-page":"E183","DOI":"10.1210\/jc.2011-2314","volume":"97","author":"M Alligier","year":"2012","unstructured":"Alligier M, Meugnier E, Debard C, Lambert-Porcheron S, Chanseaume E, Sothier M, Loizon E, Hssain AA, Brozek J, Scoazec JY, Morio B, Vidal H, Laville M: Subcutaneous adipose tissue remodeling during the initial phase of weight gain induced by overfeeding in humans. J Clin Endocrinol Metab. 2012, 97 (2): E183-E192. 10.1210\/jc.2011-2314.","journal-title":"J Clin Endocrinol Metab"},{"issue":"5990","key":"121_CR58","doi-asserted-by":"publisher","first-page":"397","DOI":"10.1126\/science.1193404","volume":"329","author":"DY Oh","year":"2010","unstructured":"Oh DY, Olefsky JM: Medicine: Wnt fans the flames in obesity. Science. 2010, 329 (5990): 397-398. 10.1126\/science.1193404.","journal-title":"Science"},{"issue":"2","key":"121_CR59","doi-asserted-by":"publisher","first-page":"e56071","DOI":"10.1371\/journal.pone.0056071","volume":"8","author":"D Hu","year":"2013","unstructured":"Hu D, Fukuhara A, Miyata Y, Yokoyama C, Otsuki M, Kihara S, Shimomura I: Adiponectin regulates vascular endothelial growth factor-C expression in macrophages via Syk-ERK pathway. PLoS One. 2013, 8 (2): e56071-10.1371\/journal.pone.0056071.","journal-title":"PLoS One"},{"issue":"8","key":"121_CR60","doi-asserted-by":"publisher","first-page":"e201","DOI":"10.1371\/journal.pbio.0050201","volume":"5","author":"SM Chambers","year":"2007","unstructured":"Chambers SM, Shaw CA, Gatza C, Fisk CJ, Donehower LA, Goodell MA: Aging hematopoietic stem cells decline in function and exhibit epigenetic dysregulation. PLoS Biol. 2007, 5 (8): e201-10.1371\/journal.pbio.0050201.","journal-title":"PLoS Biol"},{"issue":"50","key":"121_CR61","doi-asserted-by":"publisher","first-page":"20012","DOI":"10.1073\/pnas.1116110108","volume":"108","author":"WW Pang","year":"2011","unstructured":"Pang WW, Price EA, Sahoo D, Beerman I, Maloney WJ, Rossi DJ, Schrier SL, Weissman IL: Human bone marrow hematopoietic stem cells are increased in frequency and myeloid-biased with age. Proc Natl Acad Sci U S A. 2011, 108 (50): 20012-20017. 10.1073\/pnas.1116110108.","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"11","key":"121_CR62","doi-asserted-by":"publisher","first-page":"4223","DOI":"10.1182\/blood-2005-10-4240","volume":"107","author":"T Taniguchi","year":"2006","unstructured":"Taniguchi T, D'Andrea AD: Molecular pathogenesis of Fanconi anemia: recent progress. Blood. 2006, 107 (11): 4223-4233. 10.1182\/blood-2005-10-4240.","journal-title":"Blood"},{"issue":"9","key":"121_CR63","first-page":"1722","volume":"57","author":"A Ridet","year":"1997","unstructured":"Ridet A, Guillouf C, Duchaud E, Cundari E, Fiore M, Moustacchi E, Rosselli F: Deregulated apoptosis is a hallmark of the Fanconi anemia syndrome. Cancer Res. 1997, 57 (9): 1722-1730.","journal-title":"Cancer Res"},{"issue":"26","key":"121_CR64","doi-asserted-by":"publisher","first-page":"5290","DOI":"10.1182\/blood-2009-05-222414","volume":"114","author":"SM Vanderwerf","year":"2009","unstructured":"Vanderwerf SM, Svahn J, Olson S, Rathbun RK, Harrington C, Yates J, Keeble W, Anderson DC, Anur P, Pereira NF, Pilonetto DV, Pasquini R, Bagby GC: TLR8-dependent TNF-(alpha) overexpression in Fanconi anemia group C cells. Blood. 2009, 114 (26): 5290-5298. 10.1182\/blood-2009-05-222414.","journal-title":"Blood"},{"issue":"2","key":"121_CR65","doi-asserted-by":"publisher","first-page":"311","DOI":"10.1002\/jcp.1041010211","volume":"101","author":"R Weksberg","year":"1979","unstructured":"Weksberg R, Buchwald M, Sargent P, Thompson MW, Siminovitch L: Specific cellular defects in patients with Fanconi anemia. J Cell Physiol. 1979, 101 (2): 311-323. 10.1002\/jcp.1041010211.","journal-title":"J Cell Physiol"},{"issue":"6","key":"121_CR66","doi-asserted-by":"publisher","first-page":"446","DOI":"10.1038\/35076590","volume":"2","author":"H Joenje","year":"2001","unstructured":"Joenje H, Patel KJ: The emerging genetic and molecular basis of Fanconi anaemia. Nat Rev Genet. 2001, 2 (6): 446-457. 10.1038\/35076590.","journal-title":"Nat Rev Genet"},{"issue":"web server issu","key":"121_CR67","doi-asserted-by":"publisher","first-page":"W89","DOI":"10.1093\/nar\/gkt386","volume":"41","author":"G Sales","year":"2013","unstructured":"Sales G, Calura E, Martini P, Romualdi C: Graphite Web: web tool for gene set analysis exploiting pathway topology. Nucleic Acids Res. 2013, 41 (web server issue): W89-W97. 10.1093\/nar\/gkt386.","journal-title":"Nucleic Acids Res"},{"issue":"12","key":"121_CR68","doi-asserted-by":"publisher","first-page":"2303","DOI":"10.1093\/carcin\/bgh265","volume":"25","author":"G Calviello","year":"2004","unstructured":"Calviello G, Di Nicuolo F, Gragnoli S, Piccioni E, Serini S, Maggiano N, Tringali G, Navarra P, Ranelletti FO, Palozza P: n-3 PUFAs reduce VEGF expression in human colon cancer cells modulating the COX-2\/PGE2 induced ERK-1 and -2 and HIF-1alpha induction pathway. Carcinogenesis. 2004, 25 (12): 2303-2310. 10.1093\/carcin\/bgh265.","journal-title":"Carcinogenesis"},{"issue":"23","key":"121_CR69","doi-asserted-by":"publisher","first-page":"2335","DOI":"10.1056\/NEJMoa032691","volume":"350","author":"H Hurwitz","year":"2004","unstructured":"Hurwitz H, Fehrenbacher L, Novotny W, Cartwright T, Hainsworth J, Heim W, Berlin J, Baron A, Griffing S, Holmgren E, Ferrara N, Fyfe G, Rogers B, Ross R, Kabbinavar F: Bevacizumab plus irinotecan, fluorouracil, and leucovorin for metastatic colorectal cancer. N Engl J Med. 2004, 350 (23): 2335-2342. 10.1056\/NEJMoa032691.","journal-title":"N Engl J Med"},{"issue":"4","key":"121_CR70","doi-asserted-by":"publisher","first-page":"e10348","DOI":"10.1371\/journal.pone.0010348","volume":"5","author":"D Montaner","year":"2010","unstructured":"Montaner D, Dopazo J: Multidimensional gene set analysis of genomic data. PLoS One. 2010, 5 (4): e10348-10.1371\/journal.pone.0010348.","journal-title":"PLoS One"},{"issue":"10","key":"121_CR71","doi-asserted-by":"publisher","first-page":"1249","DOI":"10.1038\/nbt1020","volume":"22","author":"HV Westerhoff","year":"2004","unstructured":"Westerhoff HV, Palsson BO: The evolution of molecular biology into systems biology. Nat Biotechnol. 2004, 22 (10): 1249-1252. 10.1038\/nbt1020.","journal-title":"Nat Biotechnol"},{"issue":"6","key":"121_CR72","doi-asserted-by":"publisher","first-page":"619","DOI":"10.1002\/wsbm.144","volume":"3","author":"J Loscalzo","year":"2011","unstructured":"Loscalzo J, Barabasi AL: Systems biology and the future of medicine. Wiley Interdiscip Rev Syst Biol Med. 2011, 3 (6): 619-627. 10.1002\/wsbm.144.","journal-title":"Wiley Interdiscip Rev Syst Biol Med"},{"issue":"2","key":"121_CR73","doi-asserted-by":"publisher","first-page":"149","DOI":"10.1038\/ng.295","volume":"41","author":"JP Ioannidis","year":"2009","unstructured":"Ioannidis JP, Allison DB, Ball CA, Coulibaly I, Cui X, Culhane AC, Falchi M, Furlanello C, Game L, Jurman G, Mangion J, Mehta T, Nitzberg M, Page GP, Petretto E, Van Noort V: Repeatability of published microarray gene expression analyses. Nat Genet. 2009, 41 (2): 149-155. 10.1038\/ng.295.","journal-title":"Nat Genet"},{"issue":"3","key":"121_CR74","doi-asserted-by":"publisher","first-page":"306","DOI":"10.1038\/ng749","volume":"29","author":"JP Ioannidis","year":"2001","unstructured":"Ioannidis JP, Ntzani EE, Trikalinos TA, Contopoulos-Ioannidis DG: Replication validity of genetic association studies. Nat Genet. 2001, 29 (3): 306-309. 10.1038\/ng749.","journal-title":"Nat Genet"},{"issue":"7261","key":"121_CR75","doi-asserted-by":"publisher","first-page":"218","DOI":"10.1038\/nature08454","volume":"461","author":"EE Schadt","year":"2009","unstructured":"Schadt EE: Molecular networks as sensors and drivers of common human diseases. Nature. 2009, 461 (7261): 218-223. 10.1038\/nature08454.","journal-title":"Nature"},{"issue":"1","key":"121_CR76","doi-asserted-by":"publisher","first-page":"56","DOI":"10.1038\/nrg2918","volume":"12","author":"AL Barabasi","year":"2011","unstructured":"Barabasi AL, Gulbahce N, Loscalzo J: Network medicine: a network-based approach to human disease. Nat Rev Genet. 2011, 12 (1): 56-68. 10.1038\/nrg2918.","journal-title":"Nat Rev Genet"},{"issue":"6","key":"121_CR77","doi-asserted-by":"publisher","first-page":"986","DOI":"10.1016\/j.cell.2011.02.016","volume":"144","author":"M Vidal","year":"2011","unstructured":"Vidal M, Cusick ME, Barabasi AL: Interactome networks and human disease. Cell. 2011, 144 (6): 986-998. 10.1016\/j.cell.2011.02.016.","journal-title":"Cell"},{"issue":"3","key":"121_CR78","doi-asserted-by":"publisher","first-page":"437","DOI":"10.1016\/0022-5193(69)90015-0","volume":"22","author":"SA Kauffman","year":"1969","unstructured":"Kauffman SA: Metabolic stability and epigenesis in randomly constructed genetic nets. J Theor Biol. 1969, 22 (3): 437-467. 10.1016\/0022-5193(69)90015-0.","journal-title":"J Theor Biol"},{"issue":"1","key":"121_CR79","doi-asserted-by":"publisher","first-page":"91","DOI":"10.1006\/excr.2000.5044","volume":"261","author":"S Huang","year":"2000","unstructured":"Huang S, Ingber DE: Shape-dependent control of cell growth, differentiation, and apoptosis: switching between attractors in cell regulatory networks. Exp Cell Res. 2000, 261 (1): 91-103. 10.1006\/excr.2000.5044.","journal-title":"Exp Cell Res"},{"issue":"1","key":"121_CR80","doi-asserted-by":"publisher","first-page":"67","DOI":"10.1089\/10665270252833208","volume":"9","author":"H de Jong","year":"2002","unstructured":"de Jong H: Modeling and simulation of genetic regulatory systems: a literature review. J Comput Biol. 2002, 9 (1): 67-103. 10.1089\/10665270252833208.","journal-title":"J Comput Biol"},{"issue":"12","key":"121_CR81","doi-asserted-by":"publisher","first-page":"e1000591","DOI":"10.1371\/journal.pcbi.1000591","volume":"5","author":"A Mitsos","year":"2009","unstructured":"Mitsos A, Melas IN, Siminelakis P, Chairakaki AD, Saez-Rodriguez J, Alexopoulos LG: Identifying drug effects via pathway alterations using an integer linear programming optimization formulation on phosphoproteomic data. PLoS Comput Biol. 2009, 5 (12): e1000591-10.1371\/journal.pcbi.1000591.","journal-title":"PLoS Comput Biol"},{"issue":"1","key":"121_CR82","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1038\/nrg2484","volume":"10","author":"Z Wang","year":"2009","unstructured":"Wang Z, Gerstein M, Snyder M: RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet. 2009, 10 (1): 57-63. 10.1038\/nrg2484.","journal-title":"Nat Rev Genet"},{"issue":"12","key":"121_CR83","doi-asserted-by":"publisher","first-page":"2213","DOI":"10.1101\/gr.124321.111","volume":"21","author":"S Tarazona","year":"2011","unstructured":"Tarazona S, Garcia-Alcalde F, Dopazo J, Ferrer A, Conesa A: Differential expression in RNA-seq: a matter of depth. Genome Res. 2011, 21 (12): 2213-2223. 10.1101\/gr.124321.111.","journal-title":"Genome Res"},{"issue":"2","key":"121_CR84","doi-asserted-by":"publisher","first-page":"126","DOI":"10.1016\/j.drudis.2013.06.003","volume":"19","author":"J Dopazo","year":"2014","unstructured":"Dopazo J: Genomics and transcriptomics in drug discovery. Drug Discov Today. 2014, 19 (2): 126-132. 10.1016\/j.drudis.2013.06.003.","journal-title":"Drug Discov Today"},{"issue":"3","key":"121_CR85","doi-asserted-by":"publisher","first-page":"191","DOI":"10.1038\/nrg2732","volume":"11","author":"PW Laird","year":"2010","unstructured":"Laird PW: Principles and challenges of genomewide DNA methylation analysis. Nat Rev Genet. 2010, 11 (3): 191-203. 10.1038\/nrg2732.","journal-title":"Nat Rev Genet"},{"issue":"Database issue","key":"121_CR86","doi-asserted-by":"publisher","first-page":"D760","DOI":"10.1093\/nar\/gkl887","volume":"35","author":"T Barrett","year":"2007","unstructured":"Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, Evangelista C, Kim IF, Soboleva A, Tomashevsky M, Edgar R: NCBI GEO: mining tens of millions of expression profiles-database and tools update. Nucleic Acids Res. 2007, 35 (Database issue): D760-D765. 10.1093\/nar\/gkl887.","journal-title":"Nucleic Acids Res"},{"issue":"10","key":"121_CR87","doi-asserted-by":"publisher","first-page":"R80","DOI":"10.1186\/gb-2004-5-10-r80","volume":"5","author":"RC Gentleman","year":"2004","unstructured":"Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JY, Zhang J: Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 2004, 5 (10): R80-10.1186\/gb-2004-5-10-r80.","journal-title":"Genome Biol"},{"key":"121_CR88","doi-asserted-by":"publisher","first-page":"397","DOI":"10.1007\/0-387-29362-0_23","volume-title":"Bioinformatics and Computational Biology Solutions using R and Bioconductor","author":"G Smyth","year":"2005","unstructured":"Smyth G: Limma: linear models for microarray data. Bioinformatics and Computational Biology Solutions using R and Bioconductor. Edited by: Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W. 2005, Springer, New York, 397-420. 10.1007\/0-387-29362-0_23."},{"issue":"Web Server issu","key":"121_CR89","doi-asserted-by":"publisher","first-page":"W210","DOI":"10.1093\/nar\/gkq388","volume":"38","author":"I Medina","year":"2010","unstructured":"Medina I, Carbonell J, Pulido L, Madeira SC, Goetz S, Conesa A, Tarraga J, Pascual-Montano A, Nogales-Cadenas R, Santoyo J, Garcia F, Marba M, Montaner D, Dopazo J: Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. Nucleic Acids Res. 2010, 38 (Web Server issue): W210-W213. 10.1093\/nar\/gkq388.","journal-title":"Nucleic Acids Res"},{"key":"121_CR90","doi-asserted-by":"publisher","first-page":"269","DOI":"10.1007\/BF01386390","volume":"1","author":"E Dijkstra","year":"1959","unstructured":"Dijkstra E: A note on two problems in connexion with graphs. Numer Math. 1959, 1: 269-271. 10.1007\/BF01386390.","journal-title":"Numer Math"},{"key":"121_CR91","unstructured":"mixdist: Finite Mixture Distribution Models. In [], [http:\/\/cran.r-project.org\/web\/packages\/mixdist\/index.html]"},{"issue":"8","key":"121_CR92","doi-asserted-by":"publisher","first-page":"e2901","DOI":"10.1371\/journal.pone.0002901","volume":"3","author":"S Efroni","year":"2008","unstructured":"Efroni S, Carmel L, Schaefer CG, Buetow KH: Superposition of transcriptional behaviors determines gene state. PLoS One. 2008, 3 (8): e2901-10.1371\/journal.pone.0002901.","journal-title":"PLoS One"},{"issue":"1","key":"121_CR93","doi-asserted-by":"publisher","first-page":"70","DOI":"10.1002\/gepi.1124","volume":"23","author":"B Efron","year":"2002","unstructured":"Efron B, Tibshirani R: Empirical bayes methods and false discovery rates for microarrays. Genet Epidemiol. 2002, 23 (1): 70-86. 10.1002\/gepi.1124.","journal-title":"Genet Epidemiol"},{"key":"121_CR94","doi-asserted-by":"publisher","first-page":"474","DOI":"10.1186\/1471-2105-12-474","volume":"12","author":"Q Li","year":"2011","unstructured":"Li Q, Birkbak NJ, Gyorffy B, Szallasi Z, Eklund AC: Jetset: selecting the optimal microarray probe set to represent a gene. BMC Bioinformatics. 2011, 12: 474-10.1186\/1471-2105-12-474.","journal-title":"BMC Bioinformatics"},{"issue":"1","key":"121_CR95","doi-asserted-by":"publisher","first-page":"20","DOI":"10.1186\/1471-2105-13-20","volume":"13","author":"G Sales","year":"2012","unstructured":"Sales G, Calura E, Cavalieri D, Romualdi C: Graphite - a bioconductor package to convert pathway topology to gene network. BMC Bioinformatics. 2012, 13 (1): 20-10.1186\/1471-2105-13-20.","journal-title":"BMC Bioinformatics"},{"issue":"6","key":"121_CR96","doi-asserted-by":"publisher","first-page":"80","DOI":"10.2307\/3001968","volume":"1","author":"F Wilcoxon","year":"1945","unstructured":"Wilcoxon F: Individual comparisons by ranking methods. Biom Bull. 1945, 1 (6): 80-83. 10.2307\/3001968.","journal-title":"Biom Bull"},{"issue":"1","key":"121_CR97","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1111\/j.2517-6161.1995.tb02031.x","volume":"57","author":"Y Benjamini","year":"1995","unstructured":"Benjamini Y, Hochberg Y: Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B. 1995, 57 (1): 289-300.","journal-title":"J R Stat Soc Ser B"},{"issue":"Web Server issu","key":"121_CR98","doi-asserted-by":"publisher","first-page":"W213","DOI":"10.1093\/nar\/gkt451","volume":"41","author":"P Sebastian-Leon","year":"2013","unstructured":"Sebastian-Leon P, Carbonell J, Salavert F, Sanchez R, Medina I, Dopazo J: Inferring the functional effect of gene expression changes in signaling pathways. Nucleic Acids Res. 2013, 41 (Web Server issue): W213-W217. 10.1093\/nar\/gkt451.","journal-title":"Nucleic Acids Res"},{"key":"121_CR99","unstructured":"Csardi G, Nepusz T: The igraph software package for complex network research.InterJ Complex Systems 2006, 1695.,"}],"container-title":["BMC Systems Biology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/article\/10.1186\/s12918-014-0121-3\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12918-014-0121-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12918-014-0121-3","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12918-014-0121-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,6,4]],"date-time":"2024-06-04T09:59:15Z","timestamp":1717495155000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcsystbiol.biomedcentral.com\/articles\/10.1186\/s12918-014-0121-3"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,10,25]]},"references-count":99,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2014,12]]}},"alternative-id":["121"],"URL":"https:\/\/doi.org\/10.1186\/s12918-014-0121-3","relation":{},"ISSN":["1752-0509"],"issn-type":[{"value":"1752-0509","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,10,25]]},"assertion":[{"value":"2 January 2014","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"13 October 2014","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"25 October 2014","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"121"}}
