{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,19]],"date-time":"2024-09-19T15:53:31Z","timestamp":1726761211917},"reference-count":24,"publisher":"Oxford University Press (OUP)","issue":"D1","license":[{"start":{"date-parts":[[2018,11,5]],"date-time":"2018-11-05T00:00:00Z","timestamp":1541376000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100000925","name":"National Health and Medical Research Council","doi-asserted-by":"publisher","award":["1113577","1058344","1048087","GNT0637403","GNT1035229"],"id":[{"id":"10.13039\/501100000925","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019,1,8]]},"DOI":"10.1093\/nar\/gky1020","type":"journal-article","created":{"date-parts":[[2018,10,12]],"date-time":"2018-10-12T19:15:58Z","timestamp":1539371758000},"page":"D780-D785","source":"Crossref","is-referenced-by-count":107,"title":["Haemopedia RNA-seq: a database of gene expression during haematopoiesis in mice and humans"],"prefix":"10.1093","volume":"47","author":[{"ORCID":"http:\/\/orcid.org\/0000-0002-7788-8867","authenticated-orcid":false,"given":"Jarny","family":"Choi","sequence":"first","affiliation":[{"name":"Molecular Medicine Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia"},{"name":"Centre for Stem Cell Systems, Anatomy and Neuroscience Department, The University of Melbourne, Parkville, Victoria, Australia"}]},{"given":"Tracey M","family":"Baldwin","sequence":"additional","affiliation":[{"name":"Molecular Medicine Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia"}]},{"given":"Mae","family":"Wong","sequence":"additional","affiliation":[{"name":"CSL Limited, Parkville, Victoria, Australia"}]},{"given":"Jessica E","family":"Bolden","sequence":"additional","affiliation":[{"name":"Molecular Medicine Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia"},{"name":"Department of Medical Biology, The University of Melbourne, Parkville, Victoria, Australia"}]},{"given":"Kirsten A","family":"Fairfax","sequence":"additional","affiliation":[{"name":"Molecular Medicine Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia"},{"name":"Department of Medical Biology, The University of Melbourne, Parkville, Victoria, Australia"}]},{"given":"Erin C","family":"Lucas","sequence":"additional","affiliation":[{"name":"Molecular Medicine Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia"}]},{"given":"Rebecca","family":"Cole","sequence":"additional","affiliation":[{"name":"Molecular Medicine Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia"}]},{"given":"Christine","family":"Biben","sequence":"additional","affiliation":[{"name":"Molecular Medicine Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia"},{"name":"Department of Medical Biology, The University of Melbourne, Parkville, Victoria, Australia"}]},{"given":"Clare","family":"Morgan","sequence":"additional","affiliation":[{"name":"Molecular Medicine Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia"},{"name":"Department of Medical Biology, The University of Melbourne, Parkville, Victoria, Australia"}]},{"given":"Kerry A","family":"Ramsay","sequence":"additional","affiliation":[{"name":"Molecular Medicine Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia"}]},{"given":"Ashley P","family":"Ng","sequence":"additional","affiliation":[{"name":"Department of Medical Biology, The University of Melbourne, Parkville, Victoria, Australia"},{"name":"Cancer and Haematology Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia"}]},{"given":"Maria","family":"Kauppi","sequence":"additional","affiliation":[{"name":"Department of Medical Biology, The University of Melbourne, Parkville, Victoria, Australia"},{"name":"Cancer and Haematology Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia"}]},{"given":"Lynn M","family":"Corcoran","sequence":"additional","affiliation":[{"name":"Department of Medical Biology, The University of Melbourne, Parkville, Victoria, Australia"},{"name":"Molecular Immunology Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia"}]},{"given":"Wei","family":"Shi","sequence":"additional","affiliation":[{"name":"Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia"},{"name":"Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria, Australia"}]},{"given":"Nick","family":"Wilson","sequence":"additional","affiliation":[{"name":"CSL Limited, Parkville, Victoria, Australia"}]},{"given":"Michael J","family":"Wilson","sequence":"additional","affiliation":[{"name":"CSL Limited, Parkville, Victoria, Australia"}]},{"given":"Warren S","family":"Alexander","sequence":"additional","affiliation":[{"name":"Department of Medical Biology, The University of Melbourne, Parkville, Victoria, Australia"},{"name":"Cancer and Haematology Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia"}]},{"given":"Douglas J","family":"Hilton","sequence":"additional","affiliation":[{"name":"Molecular Medicine Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia"},{"name":"Department of Medical Biology, The University of Melbourne, Parkville, Victoria, Australia"}]},{"ORCID":"http:\/\/orcid.org\/0000-0001-8380-5311","authenticated-orcid":false,"given":"Carolyn A","family":"de\u00a0Graaf","sequence":"additional","affiliation":[{"name":"Molecular Medicine Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia"},{"name":"Department of Medical Biology, The University of Melbourne, Parkville, Victoria, Australia"}]}],"member":"286","published-online":{"date-parts":[[2018,11,5]]},"reference":[{"key":"key\n\t\t\t\t2019010800381806000_B1","first-page":"571","article-title":"Haemopedia: an expression atlas of murine hematopoietic cells","volume":"7","author":"de\u00a0Graaf","year":"2016","journal-title":"Stem Cell Rep."},{"key":"key\n\t\t\t\t2019010800381806000_B2","first-page":"1091","article-title":"The Immunological Genome Project: networks of gene expression in immune cells","volume":"9","author":"Heng","year":"2008","journal-title":"Nat. Immunol."},{"key":"key\n\t\t\t\t2019010800381806000_B3","first-page":"D917","article-title":"BloodSpot: a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis","volume":"44","author":"Bagger","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010800381806000_B4","first-page":"296","article-title":"Densely interconnected transcriptional circuits control cell states in human hematopoiesis","volume":"144","author":"Novershtern","year":"2011","journal-title":"Cell"},{"key":"key\n\t\t\t\t2019010800381806000_B5","first-page":"1","article-title":"Gene expression commons: An open platform for absolute gene expression profiling","volume":"7","author":"Seita","year":"2012","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t2019010800381806000_B6","first-page":"578","article-title":"Hematopoietic fingerprints: an expression database of stem cells and their progeny","volume":"1","author":"Chambers","year":"2007","journal-title":"Cell Stem Cell"},{"key":"key\n\t\t\t\t2019010800381806000_B7","first-page":"491","article-title":"The BLUEPRINT data analysis portal","volume":"3","author":"Fern\u00e1ndez","year":"2016","journal-title":"Cell Syst."},{"key":"key\n\t\t\t\t2019010800381806000_B8","first-page":"1766","article-title":"A reporter mouse reveals Lineage-Specific and heterogeneous expression of IRF8 during lymphoid and myeloid cell differentiation","volume":"193","author":"Wang","year":"2014","journal-title":"J. Immunol."},{"key":"key\n\t\t\t\t2019010800381806000_B9","first-page":"1136","article-title":"Cutting edge: Profile of chemokine receptor expression on human plasma cells accounts for their efficient recruitment to target tissues","volume":"170","author":"Nakayama","year":"2003","journal-title":"J. Immunol."},{"key":"key\n\t\t\t\t2019010800381806000_B10","first-page":"123","article-title":"Identification of a Siglec-F+ granulocyte-macrophage progenitor","volume":"104","author":"Bolden","year":"2018","journal-title":"J. Leukoc. Biol."},{"key":"key\n\t\t\t\t2019010800381806000_B11","first-page":"663","article-title":"Transcriptional profiling of mouse B cell terminal differentiation defines a signature for antibody-secreting plasma cells","volume":"16","author":"Shi","year":"2015","journal-title":"Nat. Immunol."},{"key":"key\n\t\t\t\t2019010800381806000_B12","article-title":"Plasmacytoid dendritic cell heterogeneity is defined by CXCL10 expression following TLR7 stimulation","author":"Marsman","year":"2018","journal-title":"Immunol. Cell Biol."},{"key":"key\n\t\t\t\t2019010800381806000_B13","first-page":"e108","article-title":"The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote","volume":"41","author":"Liao","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010800381806000_B14","first-page":"923","article-title":"FeatureCounts: an efficient general purpose program for assigning sequence reads to genomic features","volume":"30","author":"Liao","year":"2014","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t2019010800381806000_B15","first-page":"e109760","article-title":"Copy number loss of the interferon gene cluster in melanomas is linked to reduced T cell infiltrate and poor patient prognosis","volume":"9","author":"Linsley","year":"2014","journal-title":"PLoS One"},{"key":"key\n\t\t\t\t2019010800381806000_B16","first-page":"274","article-title":"Transcriptome-Based network analysis reveals a spectrum model of human macrophage activation","volume":"40","author":"Xue","year":"2014","journal-title":"Immunity"},{"key":"key\n\t\t\t\t2019010800381806000_B17","first-page":"1","article-title":"A HaemAtlas: characterizing gene expression in differentiated human blood cells","volume":"113","author":"Watkins","year":"2009","journal-title":"Blood"},{"key":"key\n\t\t\t\t2019010800381806000_B18","first-page":"894","article-title":"Comparing cancer vs normal gene expression profiles identifies new disease entities and common transcriptional programs in AML patients Comparing cancer vs normal gene expression profiles identifies new disease entities and common transcriptional prog","volume":"123","author":"Rapin","year":"2014","journal-title":"Blood"},{"key":"key\n\t\t\t\t2019010800381806000_B19","first-page":"2403","article-title":"PU.1 induces myoeloid lineage commitment in multipotent hematopoietic progenitors","volume":"12","author":"Nerlov","year":"1998","journal-title":"Genes Dev."},{"key":"key\n\t\t\t\t2019010800381806000_B20","first-page":"580","article-title":"PU.1-mediated upregulation of CSF1R is crucial for leukemia stem cell potential induced by MOZ-TIF2","volume":"16","author":"Aikawa","year":"2010","journal-title":"Nat. Med."},{"key":"key\n\t\t\t\t2019010800381806000_B21","first-page":"139","article-title":"edgeR: A Bioconductor package for differential expression analysis of digital gene expression data","volume":"26","author":"Robinson","year":"2009","journal-title":"Bioinformatics"},{"key":"key\n\t\t\t\t2019010800381806000_B22","first-page":"1","article-title":"Voom: precision weights unlock linear model analysis tools for RNA-seq read counts","volume":"15","author":"Law","year":"2014","journal-title":"Genome Biol."},{"key":"key\n\t\t\t\t2019010800381806000_B23","first-page":"207","article-title":"Gene Expression Omnibus: NCBI gene expression and hybridization array data repository","volume":"30","author":"Edgar","year":"2002","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t2019010800381806000_B24","first-page":"3055","article-title":"Building online genomics applications using BioPyramid","volume":"34","author":"Stephenson","year":"2018","journal-title":"Bioinformatics"}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/nar\/article-pdf\/47\/D1\/D780\/27436417\/gky1020.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,9]],"date-time":"2019-01-09T11:29:49Z","timestamp":1547033389000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/nar\/article\/47\/D1\/D780\/5160992"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,11,5]]},"references-count":24,"journal-issue":{"issue":"D1","published-online":{"date-parts":[[2018,11,5]]},"published-print":{"date-parts":[[2019,1,8]]}},"URL":"https:\/\/doi.org\/10.1093\/nar\/gky1020","relation":{},"ISSN":["0305-1048","1362-4962"],"issn-type":[{"value":"0305-1048","type":"print"},{"value":"1362-4962","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2019,1,8]]},"published":{"date-parts":[[2018,11,5]]}}}
