{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,5,10]],"date-time":"2024-05-10T09:23:09Z","timestamp":1715332989498},"reference-count":15,"publisher":"Oxford University Press (OUP)","issue":"11","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011,6,1]]},"abstract":"Abstract<\/jats:title>\n Summary: Network motifs in integrated molecular networks represent functional relationships between distinct data types. They aggregate to form dense topological structures corresponding to functional modules which cannot be detected by traditional graph clustering algorithms. We developed CyClus3D, a Cytoscape plugin for clustering composite three-node network motifs using a 3D spectral clustering algorithm.<\/jats:p>\n Availability: Via the Cytoscape plugin manager or http:\/\/bioinformatics.psb.ugent.be\/software\/details\/CyClus3D.<\/jats:p>\n Contact: \u00a0tom.michoel@frias.uni-freiburg.de<\/jats:p>\n Supplementary Information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btr182","type":"journal-article","created":{"date-parts":[[2011,4,9]],"date-time":"2011-04-09T01:33:35Z","timestamp":1302312815000},"page":"1587-1588","source":"Crossref","is-referenced-by-count":12,"title":["CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks"],"prefix":"10.1093","volume":"27","author":[{"given":"Pieter","family":"Audenaert","sequence":"first","affiliation":[{"name":"1 Department of Information Technology, Ghent University \u2013 IBBT, Gaston Crommenlaan 8\/201, B-9050 Gent, 2Department of Plant Systems Biology, VIB, 3Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium and 4School of Life Sciences - LifeNet, Freiburg Institute for Advanced Studies, University of Freiburg, Albertstrasse 19, D-79104 Freiburg, Germany"}]},{"given":"Thomas","family":"Van Parys","sequence":"additional","affiliation":[{"name":"1 Department of Information Technology, Ghent University \u2013 IBBT, Gaston Crommenlaan 8\/201, B-9050 Gent, 2Department of Plant Systems Biology, VIB, 3Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium and 4School of Life Sciences - LifeNet, Freiburg Institute for Advanced Studies, University of Freiburg, Albertstrasse 19, D-79104 Freiburg, Germany"},{"name":"1 Department of Information Technology, Ghent University \u2013 IBBT, Gaston Crommenlaan 8\/201, B-9050 Gent, 2Department of Plant Systems Biology, VIB, 3Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium and 4School of Life Sciences - LifeNet, Freiburg Institute for Advanced Studies, University of Freiburg, Albertstrasse 19, D-79104 Freiburg, Germany"}]},{"given":"Florian","family":"Brondel","sequence":"additional","affiliation":[{"name":"1 Department of Information Technology, Ghent University \u2013 IBBT, Gaston Crommenlaan 8\/201, B-9050 Gent, 2Department of Plant Systems Biology, VIB, 3Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium and 4School of Life Sciences - LifeNet, Freiburg Institute for Advanced Studies, University of Freiburg, Albertstrasse 19, D-79104 Freiburg, Germany"}]},{"given":"Mario","family":"Pickavet","sequence":"additional","affiliation":[{"name":"1 Department of Information Technology, Ghent University \u2013 IBBT, Gaston Crommenlaan 8\/201, B-9050 Gent, 2Department of Plant Systems Biology, VIB, 3Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium and 4School of Life Sciences - LifeNet, Freiburg Institute for Advanced Studies, University of Freiburg, Albertstrasse 19, D-79104 Freiburg, Germany"}]},{"given":"Piet","family":"Demeester","sequence":"additional","affiliation":[{"name":"1 Department of Information Technology, Ghent University \u2013 IBBT, Gaston Crommenlaan 8\/201, B-9050 Gent, 2Department of Plant Systems Biology, VIB, 3Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium and 4School of Life Sciences - LifeNet, Freiburg Institute for Advanced Studies, University of Freiburg, Albertstrasse 19, D-79104 Freiburg, Germany"}]},{"given":"Yves","family":"Van de Peer","sequence":"additional","affiliation":[{"name":"1 Department of Information Technology, Ghent University \u2013 IBBT, Gaston Crommenlaan 8\/201, B-9050 Gent, 2Department of Plant Systems Biology, VIB, 3Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium and 4School of Life Sciences - LifeNet, Freiburg Institute for Advanced Studies, University of Freiburg, Albertstrasse 19, D-79104 Freiburg, Germany"},{"name":"1 Department of Information Technology, Ghent University \u2013 IBBT, Gaston Crommenlaan 8\/201, B-9050 Gent, 2Department of Plant Systems Biology, VIB, 3Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium and 4School of Life Sciences - LifeNet, Freiburg Institute for Advanced Studies, University of Freiburg, Albertstrasse 19, D-79104 Freiburg, Germany"}]},{"given":"Tom","family":"Michoel","sequence":"additional","affiliation":[{"name":"1 Department of Information Technology, Ghent University \u2013 IBBT, Gaston Crommenlaan 8\/201, B-9050 Gent, 2Department of Plant Systems Biology, VIB, 3Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium and 4School of Life Sciences - 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