Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography (Q28764545)

31

0 references

Alla Lapidus

21

Alla Lapidus

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Vincent Daubin

Vincent Daubin

14

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Anita Sellstedt

Anita Sellstedt

32

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Derek M Bickhart

Derek M Bickhart

9

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Fernando Tavares

Fernando Tavares

33

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Arnaud Couloux

Arnaud Couloux

11

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Louis S Tisa

Louis S Tisa

3

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Philippe Normand

Philippe Normand

1

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Johann Peter Gogarten

Johann Peter Gogarten

4

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Benoît Cournoyer

12

Benoit Cournoyer

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David R. Benson

40

David R Benson

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Alison M Berry

8

Alison M Berry

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Nicole Alloisio

5

Nicole Alloisio

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author name string

Pascal Lapierre

2

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Emilie Bagnarol

6

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Carla A Bassi

7

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Stephane Cruveiller

13

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Nadia Demange

15

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Maria Pilar Francino

16

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Eugene Goltsman

17

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Ying Huang

18

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Olga R Kopp

19

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Laurent Labarre

20

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Celine Lavire

22

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Joelle Marechal

23

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Michele Martinez

24

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Juliana E Mastronunzio

25

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Beth C Mullin

26

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James Niemann

27

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Pierre Pujic

28

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Tania Rawnsley

29

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Zoe Rouy

30

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Jeffrey P Tomkins

34

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David Vallenet

35

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Claudio Valverde

36

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Luis G Wall

37

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Ying Wang

38

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Claudine Medigue

MaGe: a microbial genome annotation system supported by synteny results

39

0 references

language of work or name

English

0 references

publication date

January 2007

0 references

published in

Genome Research

0 references

volume

17

0 references

issue

1

0 references

page(s)

7-15

0 references

cites work

1 reference

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16 March 2017

1 reference

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Accelerated evolution associated with genome reduction in a free-living prokaryote

16 March 2017

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Calibrating bacterial evolution

16 March 2017

1 reference

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Consed: a graphical tool for sequence finishing

16 March 2017

1 reference

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Base-calling of automated sequencer traces using phred. II. Error probabilities

16 March 2017

1 reference

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Base-calling of automated sequencer traces using phred. I. Accuracy assessment

16 March 2017

1 reference

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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

16 March 2017

1 reference

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Chloroplast gene sequence data suggest a single origin of the predisposition for symbiotic nitrogen fixation in angiosperms

16 March 2017

1 reference

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A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

16 March 2017

1 reference

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The neighbor-joining method: a new method for reconstructing phylogenetic trees

16 March 2017

1 reference

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Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)

16 March 2017

1 reference

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Opinion: Re-evaluating prokaryotic species

7 April 2017

1 reference

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Mobile genetic elements: the agents of open source evolution

3 June 2018

1 reference

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Genomic insights that advance the species definition for prokaryotes

3 June 2018

1 reference

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The evolution of chronic infection strategies in the alpha-proteobacteria.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1716269

Assessing the phylogeny of Frankia-actinorhizal plant nitrogen-fixing root nodule symbioses with Frankia 16S rRNA and glutamine synthetase gene sequences

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1716269

Tracing the evolution of gene loss in obligate bacterial symbionts

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1716269

An Improved Method for Plant BAC Library Construction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1716269

An applications-focused review of comparative genomics tools: capabilities, limitations and future challenges

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1716269

AMIGene: Annotation of MIcrobial Genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1716269

Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1716269

Ralstonia taiwanensis sp. nov., isolated from root nodules of Mimosa species and sputum of a cystic fibrosis patient

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1716269

Deletional bias and the evolution of bacterial genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1716269

Nodulation of legumes by members of the beta-subclass of Proteobacteria.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1716269

Genes lost and genes found: evolution of bacterial pathogenesis and symbiosis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1716269

Molecular phylogeny of the genus Frankia and related genera and emendation of the family Frankiaceae

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1716269

Construction and properties of a family of pACYC184-derived cloning vectors compatible with pBR322 and its derivatives

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1716269

An adaptive radiation model for the origin of new gene functions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1716269

Low genetic diversity among Frankia spp. strains nodulating sympatric populations of actinorhizal species of Rosaceae, Ceanothus (Rhamnaceae) and Datisca glomerata (Datiscaceae) west of the Sierra Nevada (California).

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1716269

Phylogenetic analyses of symbiotic nodulation genes support vertical and lateral gene co-transfer within the Bradyrhizobium genus

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1716269

Identification of a nodD-like gene in Frankia by direct complementation of a Rhizobium nodD-mutant

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1716269

Co-evolution between Frankia populations and host plants in the family Casuarinaceae and consequent patterns of global dispersal

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17151343

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Specificity and effectivity in nodulation by Frankia on southern hemisphere actinorhiza

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17151343

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.5798407

1 reference

1 reference

1 reference

PubMed publication ID

17151343

1 reference