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Link to original content: http://www.ncbi.nlm.nih.gov/pubmed/33180112
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. 2021 Jan 8;49(D1):D1507-D1514.
doi: 10.1093/nar/gkaa994.

Europe PMC in 2020

Christine Ferguson  1 , Dayane Araújo  1 , Lynne Faulk  1 , Yuci Gou  1 , Audrey Hamelers  1 , Zhan Huang  1 , Michele Ide-Smith  1 , Maria Levchenko  1 , Nikos Marinos  1 , Rakesh Nambiar  1 , Maaly Nassar  1 , Michael Parkin  1 , Xingjun Pi  1 , Faisal Rahman  1 , Frances Rogers  1 , Yogmatee Roochun  1 , Shyamasree Saha  1 , Mohamed Selim  1 , Zunaira Shafique  1 , Shrey Sharma  1 , David Stephenson  1 , Francesco Talo'  1 , Arthur Thouvenin  1 , Santosh Tirunagari  1 , Vid Vartak  1 , Aravind Venkatesan  1 , Xiao Yang  1 , Johanna McEntyre  1
Affiliations

Europe PMC in 2020

Christine Ferguson et al. Nucleic Acids Res. .

Abstract

Europe PMC (https://europepmc.org) is a database of research articles, including peer reviewed full text articles and abstracts, and preprints - all freely available for use via website, APIs and bulk download. This article outlines new developments since 2017 where work has focussed on three key areas: (i) Europe PMC has added to its core content to include life science preprint abstracts and a special collection of full text of COVID-19-related preprints. Europe PMC is unique as an aggregator of biomedical preprints alongside peer-reviewed articles, with over 180 000 preprints available to search. (ii) Europe PMC has significantly expanded its links to content related to the publications, such as links to Unpaywall, providing wider access to full text, preprint peer-review platforms, all major curated data resources in the life sciences, and experimental protocols. The redesigned Europe PMC website features the PubMed abstract and corresponding PMC full text merged into one article page; there is more evident and user-friendly navigation within articles and to related content, plus a figure browse feature. (iii) The expanded annotations platform offers ∼1.3 billion text mined biological terms and concepts sourced from 10 providers and over 40 global data resources.

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Figures

Figure 1.
Figure 1.
Preprints in Europe PMC (Accessed September 2020).
Figure 2.
Figure 2.
COVID-19 preprints indexed per week (in green) vs peer-reviewed journal articles (in orange) in Europe PMC (accessed September 2020)
Figure 3.
Figure 3.
Display of preprints in Europe PMC’s redesigned search page (A) and article page (B). Key for 1–7 can be found in the main text. A bespoke COVID-19 search link can be found under the search box. This automatically populates the search box with the Boolean terms required to identify all coronavirus-related content in Europe PMC. Search functionality includes filters for content type, free full text and date (left), the list of search results is in the main view; actions, such as saving a search or exporting citations, are displayed to the right. Web pages accessed September 2020.
Figure 4.
Figure 4.
The data tab in the redesigned article page. The left hand navigation panel leads to the categories of research resources available for https://europepmc.org/article/MED/32083328#data (accessed September 2020).
Figure 5.
Figure 5.
The growth of crosslinked research resources offered by Europe PMC 2017–2020: Europe PMC’s search engine is more powerful because of the links between journal articles/preprints and related research resources.
Figure 6.
Figure 6.
The article page in Europe PMC: Integrations with Unpaywall (green lozenge) provide links to a free legal copy of the full text. Links to PubMed Commons comments, where available, are displayed above the abstract (red lozenge). ORCID integration is possible via the ‘claim to ORCID’ feature (red arrow, right); once claimed, the ORCID icon appears alongside the author's name (red arrow, left). Web page accessed September 2020.
Figure 7.
Figure 7.
The user interface of grant finder tool. The tool can be used to search for details of more than 80 thousand grants from Europe PMC funders or more than 18 hundred COVID-19 grants. https://europepmc.org/grantfinder (accessed September 2020.)
Figure 8.
Figure 8.
Annotation types: the biological terms and concepts that are currently text mined from articles indexed in Europe PMC.
See this image and copyright information in PMC

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