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Link to original content: http://pubmed.ncbi.nlm.nih.gov/36028202/
Diverse viromes in polar regions: A retrospective study of metagenomic data from Antarctic animal feces and Arctic frozen soil in 2012-2014 - PubMed Skip to main page content
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. 2022 Dec;37(6):883-893.
doi: 10.1016/j.virs.2022.08.006. Epub 2022 Aug 24.

Diverse viromes in polar regions: A retrospective study of metagenomic data from Antarctic animal feces and Arctic frozen soil in 2012-2014

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Diverse viromes in polar regions: A retrospective study of metagenomic data from Antarctic animal feces and Arctic frozen soil in 2012-2014

Jun Wang et al. Virol Sin. 2022 Dec.

Abstract

Antarctica and the Arctic are the coldest places, containing a high diversity of microorganisms, including viruses, which are important components of polar ecosystems. However, owing to the difficulties in obtaining access to animal and environmental samples, the current knowledge of viromes in polar regions is still limited. To better understand polar viromes, this study performed a retrospective analysis using metagenomic sequencing data of animal feces from Antarctica and frozen soil from the Arctic collected during 2012-2014. The results reveal diverse communities of DNA and RNA viruses from at least 23 families from Antarctic animal feces and 16 families from Arctic soils. Although the viral communities from Antarctica and the Arctic show a large diversity, they have genetic similarities with known viruses from different ecosystems and organisms with similar viral proteins. Phylogenetic analysis of Microviridae, Parvoviridae, and Larvidaviridae was further performed, and complete genomic sequences of two novel circular replication-associated protein (rep)-encoding single-stranded (CRESS) DNA viruses closely related to Circoviridae were identified. These results reveal the high diversity, complexity, and novelty of viral communities from polar regions, and suggested the genetic similarity and functional correlations of viromes between the Antarctica and Arctic. Variations in viral families in Arctic soils, Arctic freshwater, and Antarctic soils are discussed. These findings improve our understanding of polar viromes and suggest the importance of performing follow-up in-depth investigations of animal and environmental samples from Antarctica and the Arctic, which would reveal the substantial role of these viruses in the global viral community.

Keywords: Antarctica animal feces; Arctic soil; Metagenomics; Virus diversity.

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Figures

Fig. 1
Fig. 1
Maps showing where samples were collected. A Global map of sampling sites in Antarctica and the Arctic. The Arctic and Antarctic circles are indicated by yellow lines. B and C show the sampling sites in the enlarged images.
Fig. 2
Fig. 2
Viral communities of animal feces from Antarctica and sequence identities of viruses belonging to different families. A DNA and RNA viruses of identified families and unassigned viruses are illustrated for each sample. B Identities of viral families from migratory birds and land animals compared with known reference viruses.
Fig. 3
Fig. 3
Viral communities of Arctic soils and sequence identities of phages belonging to different families. A DNA and RNA viruses of identified families and unassigned viruses are illustrated for each sample. B Identities of phages related to unclassified Caudovirales, Myoviridae, Podoviridae, Siphoviridae, and Microviridae are shown from each of the sampling locations.
Fig. 4
Fig. 4
Genetic correlation and functional homology analysis of viral communities in the polar regions. A Genetic correlation of Antarctic and Arctic viruses with known viruses from different ecosystems and organisms using IMG-VR metadata. B Prediction of viral protein function of the Antarctic and Arctic viruses. Viral proteins with functional homology are clustered in networks. Each node is a complete protein or a partial protein, and each link represents a hit with an e-value < 10−10 (node number >3 are shown). Clusters containing proteins of similar putative functions are shaded with the same color so as to be distinguished from other clusters, whereas clusters containing proteins of unknown functions are not shaded. Clusters of structural proteins are circled to distinguish them from non-structural proteins.
Fig. 5
Fig. 5
Phylogeny of viral sequences found in Antarctic animal feces and Arctic soils. Phylogenetic tree of Microviridae (A), two novel CRESS DNA viruses related to Circoviridae (B), Parvoviridae (C), and Larvidaviridae (D) ​were constructed using different models as described in Methods. Sequences from Antarctica are shown in black solid circles and sequences from the Arctic are shown in hollow circles. The genomic organization and structures of the two novel CRESS DNA viruses are illustrated in (B) on the left.

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