Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

📮 An integrative registry of biological databases, ontologies, and nomenclatures.

LLM-driven curation assist tool

🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources.

📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology

Text mining for pharmacogenomic associations for PharmGKB

CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer

🐳 Apollo 2.X Docker Image

Next-generation Biocuration App for annotating cases and PhenoPackets

The Curation of Neurodegeneration Supporting Ontology (CONSO)

PomBase curation

A package for generating curation sheets for rationally enriching a BEL graph using INDRA and PyBEL

🗄️ Conversion of biomedical nomenclatures like HGNC to OBO

Guidelines and procedures for curation (manual and semi-automated)

Curation of Neurodegeneration in Biological Expression Language (CONIB)

Code, notebooks, and resources for exploring and analyzing mechanistic knowledge graphs about 'rona

My personal website, served at https://cthoyt.com

Proyecto de manejo de información digital sobre pruebas de función respiratoria mediante anotación semántica con Hypothes.is

Git and continuous integration tools for PyBEL to assist in curating BEL

An application of the rational enrichment workflow to ten subgraphs from NeuroMMSig for the Human Brain Pharmacome project (https://pharmacome.scai.fraunhofer.de)