HEADER HORMONE RECEPTOR 28-NOV-11 3UUA
TITLE CRYSTAL STRUCTURE OF HERA-LBD (Y537S) IN COMPLEX WITH BISPHENOL-AF
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ESTROGEN RECEPTOR;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN (RESIDUES 302-552);
COMPND 5 SYNONYM: ER, ER-ALPHA, ESTRADIOL RECEPTOR, NUCLEAR RECEPTOR SUBFAMILY
COMPND 6 3 GROUP A MEMBER 1;
COMPND 7 ENGINEERED: YES;
COMPND 8 MUTATION: YES;
COMPND 9 MOL_ID: 2;
COMPND 10 MOLECULE: ESTROGEN RECEPTOR;
COMPND 11 CHAIN: B;
COMPND 12 FRAGMENT: LIGAND BINDING DOMAIN (RESIDUES 302-552);
COMPND 13 SYNONYM: ER, ER-ALPHA, ESTRADIOL RECEPTOR, NUCLEAR RECEPTOR SUBFAMILY
COMPND 14 3 GROUP A MEMBER 1;
COMPND 15 ENGINEERED: YES;
COMPND 16 MUTATION: YES;
COMPND 17 MOL_ID: 3;
COMPND 18 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 1;
COMPND 19 CHAIN: F, G;
COMPND 20 FRAGMENT: COACTIVATOR PEPTIDE SRC-1;
COMPND 21 SYNONYM: NCOA-1, CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 74, BHLHE74,
COMPND 22 PROTEIN HIN-2, RIP160, RENAL CARCINOMA ANTIGEN NY-REN-52, STEROID
COMPND 23 RECEPTOR COACTIVATOR 1, SRC-1;
COMPND 24 EC: 2.3.1.48;
COMPND 25 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: ESR1, ESR, NR3A1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32A;
SOURCE 11 MOL_ID: 2;
SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 13 ORGANISM_COMMON: HUMAN;
SOURCE 14 ORGANISM_TAXID: 9606;
SOURCE 15 GENE: ESR1, ESR, NR3A1;
SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET32A;
SOURCE 21 MOL_ID: 3;
SOURCE 22 SYNTHETIC: YES;
SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 24 ORGANISM_COMMON: HUMAN;
SOURCE 25 ORGANISM_TAXID: 9606;
SOURCE 26 OTHER_DETAILS: SYNTHETIC PEPTIDE
KEYWDS LIGAND-BINDING DOMAIN OF NUCLEAR HORMONE RECEPTOR, HORMONE RECEPTOR
EXPDTA X-RAY DIFFRACTION
AUTHOR V.DELFOSSE,M.GRIMALDI,W.BOURGUET
REVDAT 5 16-OCT-24 3UUA 1 REMARK
REVDAT 4 06-DEC-23 3UUA 1 REMARK
REVDAT 3 13-SEP-23 3UUA 1 REMARK SEQADV LINK
REVDAT 2 26-SEP-12 3UUA 1 JRNL
REVDAT 1 22-AUG-12 3UUA 0
JRNL AUTH V.DELFOSSE,M.GRIMALDI,J.L.PONS,A.BOULAHTOUF,A.LE MAIRE,
JRNL AUTH 2 V.CAVAILLES,G.LABESSE,W.BOURGUET,P.BALAGUER
JRNL TITL STRUCTURAL AND MECHANISTIC INSIGHTS INTO BISPHENOLS ACTION
JRNL TITL 2 PROVIDE GUIDELINES FOR RISK ASSESSMENT AND DISCOVERY OF
JRNL TITL 3 BISPHENOL A SUBSTITUTES.
JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 14930 2012
JRNL REFN ISSN 0027-8424
JRNL PMID 22927406
JRNL DOI 10.1073/PNAS.1203574109
REMARK 2
REMARK 2 RESOLUTION. 2.05 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.60
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5
REMARK 3 NUMBER OF REFLECTIONS : 30405
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.192
REMARK 3 R VALUE (WORKING SET) : 0.190
REMARK 3 FREE R VALUE : 0.231
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1521
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 46.6116 - 4.5579 0.99 2656 140 0.1770 0.2015
REMARK 3 2 4.5579 - 3.6181 0.99 2633 139 0.1577 0.1882
REMARK 3 3 3.6181 - 3.1609 0.99 2631 139 0.1766 0.2463
REMARK 3 4 3.1609 - 2.8720 0.99 2626 138 0.1973 0.2242
REMARK 3 5 2.8720 - 2.6661 1.00 2620 138 0.2165 0.2489
REMARK 3 6 2.6661 - 2.5089 1.00 2644 139 0.2166 0.2705
REMARK 3 7 2.5089 - 2.3833 1.00 2601 137 0.2138 0.2769
REMARK 3 8 2.3833 - 2.2796 1.00 2618 137 0.2107 0.2677
REMARK 3 9 2.2796 - 2.1918 1.00 2625 139 0.2186 0.2495
REMARK 3 10 2.1918 - 2.1162 1.00 2637 139 0.2285 0.3129
REMARK 3 11 2.1162 - 2.0500 1.00 2593 136 0.2553 0.3253
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.20
REMARK 3 SHRINKAGE RADIUS : 0.95
REMARK 3 K_SOL : 0.35
REMARK 3 B_SOL : 59.80
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.350
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 32.75
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 1.86670
REMARK 3 B22 (A**2) : 2.10870
REMARK 3 B33 (A**2) : -3.97540
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 7.21680
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.004 3947
REMARK 3 ANGLE : 0.762 5361
REMARK 3 CHIRALITY : 0.051 642
REMARK 3 PLANARITY : 0.003 659
REMARK 3 DIHEDRAL : 17.854 1432
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 8
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN A AND RESSEQ 305:410
REMARK 3 ORIGIN FOR THE GROUP (A): 11.3391 2.6562 6.0791
REMARK 3 T TENSOR
REMARK 3 T11: 0.1829 T22: 0.1720
REMARK 3 T33: 0.1401 T12: -0.0114
REMARK 3 T13: 0.0127 T23: -0.0145
REMARK 3 L TENSOR
REMARK 3 L11: 1.2742 L22: 0.2749
REMARK 3 L33: 2.8184 L12: 0.0435
REMARK 3 L13: -0.8179 L23: -0.2881
REMARK 3 S TENSOR
REMARK 3 S11: -0.2442 S12: -0.1822 S13: -0.1861
REMARK 3 S21: 0.0607 S22: 0.0373 S23: -0.0260
REMARK 3 S31: 0.2769 S32: 0.0787 S33: 0.1467
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN A AND RESSEQ 411:532
REMARK 3 ORIGIN FOR THE GROUP (A): 11.9913 5.9553 -5.8623
REMARK 3 T TENSOR
REMARK 3 T11: 0.1238 T22: 0.1194
REMARK 3 T33: 0.1361 T12: -0.0004
REMARK 3 T13: 0.0063 T23: -0.0288
REMARK 3 L TENSOR
REMARK 3 L11: 1.7610 L22: 0.8167
REMARK 3 L33: 3.8717 L12: -0.2971
REMARK 3 L13: -0.7838 L23: 0.0389
REMARK 3 S TENSOR
REMARK 3 S11: 0.1118 S12: -0.0238 S13: 0.0240
REMARK 3 S21: -0.0190 S22: -0.1783 S23: -0.0348
REMARK 3 S31: 0.0807 S32: -0.1381 S33: 0.0750
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN A AND RESSEQ 533:548
REMARK 3 ORIGIN FOR THE GROUP (A): 24.7408 -6.9997 5.9964
REMARK 3 T TENSOR
REMARK 3 T11: 0.4096 T22: 0.5048
REMARK 3 T33: 0.3087 T12: 0.1237
REMARK 3 T13: 0.0139 T23: 0.1361
REMARK 3 L TENSOR
REMARK 3 L11: 0.6142 L22: 0.9007
REMARK 3 L33: 4.4091 L12: -0.6562
REMARK 3 L13: -0.1538 L23: -0.2867
REMARK 3 S TENSOR
REMARK 3 S11: -0.6522 S12: -0.1322 S13: -0.3117
REMARK 3 S21: 0.2740 S22: -0.1310 S23: 0.2124
REMARK 3 S31: 0.0381 S32: 1.1262 S33: 0.5123
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN B AND RESSEQ 305:410
REMARK 3 ORIGIN FOR THE GROUP (A): 24.7508 4.2347 -28.1641
REMARK 3 T TENSOR
REMARK 3 T11: 0.0943 T22: 0.1222
REMARK 3 T33: 0.1124 T12: 0.0313
REMARK 3 T13: -0.0124 T23: 0.0054
REMARK 3 L TENSOR
REMARK 3 L11: 1.0231 L22: 0.7277
REMARK 3 L33: 2.1189 L12: -0.5187
REMARK 3 L13: -1.4440 L23: 1.0554
REMARK 3 S TENSOR
REMARK 3 S11: -0.0010 S12: 0.2416 S13: 0.0908
REMARK 3 S21: 0.0639 S22: -0.0761 S23: -0.1041
REMARK 3 S31: -0.1063 S32: -0.0410 S33: 0.0345
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN B AND RESSEQ 411:532
REMARK 3 ORIGIN FOR THE GROUP (A): 16.1958 1.5882 -19.8800
REMARK 3 T TENSOR
REMARK 3 T11: 0.1184 T22: 0.1084
REMARK 3 T33: 0.1040 T12: 0.0198
REMARK 3 T13: -0.0025 T23: -0.0094
REMARK 3 L TENSOR
REMARK 3 L11: 2.3385 L22: 1.1453
REMARK 3 L33: 2.6369 L12: -0.7400
REMARK 3 L13: -1.2062 L23: 0.3381
REMARK 3 S TENSOR
REMARK 3 S11: -0.0013 S12: 0.1879 S13: -0.1591
REMARK 3 S21: 0.1397 S22: -0.1690 S23: 0.0416
REMARK 3 S31: 0.1219 S32: -0.2944 S33: 0.1487
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN B AND RESSEQ 533:548
REMARK 3 ORIGIN FOR THE GROUP (A): 37.7437 3.9545 -18.2519
REMARK 3 T TENSOR
REMARK 3 T11: 0.1074 T22: 0.3543
REMARK 3 T33: 0.2425 T12: 0.0151
REMARK 3 T13: -0.0242 T23: -0.0089
REMARK 3 L TENSOR
REMARK 3 L11: 1.8923 L22: 0.9586
REMARK 3 L33: 1.4629 L12: -1.0752
REMARK 3 L13: -0.8320 L23: 0.8349
REMARK 3 S TENSOR
REMARK 3 S11: 0.0602 S12: -0.1794 S13: 0.5932
REMARK 3 S21: -0.0604 S22: 0.2152 S23: -0.5851
REMARK 3 S31: 0.0659 S32: 0.8445 S33: -0.0965
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN F
REMARK 3 ORIGIN FOR THE GROUP (A): 12.0571 -14.5489 8.4502
REMARK 3 T TENSOR
REMARK 3 T11: 0.5659 T22: 0.2086
REMARK 3 T33: 0.4522 T12: 0.0222
REMARK 3 T13: 0.1344 T23: 0.1737
REMARK 3 L TENSOR
REMARK 3 L11: 1.5416 L22: 0.4825
REMARK 3 L33: 3.8740 L12: -0.6989
REMARK 3 L13: -0.6006 L23: 1.0243
REMARK 3 S TENSOR
REMARK 3 S11: -0.1728 S12: -0.0508 S13: -0.8557
REMARK 3 S21: 0.4745 S22: 0.3753 S23: -0.6006
REMARK 3 S31: 0.7306 S32: 0.1331 S33: -0.2261
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: CHAIN G
REMARK 3 ORIGIN FOR THE GROUP (A): 35.6884 16.8237 -26.8412
REMARK 3 T TENSOR
REMARK 3 T11: 0.3240 T22: 0.2820
REMARK 3 T33: 0.5676 T12: -0.0742
REMARK 3 T13: 0.1330 T23: 0.0303
REMARK 3 L TENSOR
REMARK 3 L11: 0.8408 L22: 0.6344
REMARK 3 L33: 1.1563 L12: -0.6685
REMARK 3 L13: -0.3544 L23: 0.3415
REMARK 3 S TENSOR
REMARK 3 S11: -0.1351 S12: 0.1668 S13: 0.3908
REMARK 3 S21: -0.4750 S22: -0.1316 S23: -0.4703
REMARK 3 S31: -0.3825 S32: 0.3176 S33: -0.2066
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 3UUA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-11.
REMARK 100 THE DEPOSITION ID IS D_1000069216.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 23-JUN-11
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.75
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ESRF
REMARK 200 BEAMLINE : ID23-2
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260
REMARK 200 MONOCHROMATOR : SI(111)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30405
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050
REMARK 200 RESOLUTION RANGE LOW (A) : 46.600
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5
REMARK 200 DATA REDUNDANCY : 3.600
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.05200
REMARK 200